Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48499 * 109.46946 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47355 * 300.00034 * 3 2 1 6 6 H 1.48502 * 109.46833 * 60.00326 * 3 2 1 7 7 C 1.37871 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00207 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46732 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46737 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46948 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46942 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00262 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99434 * 179.97438 * 13 12 11 16 16 C 1.47350 * 126.15367 * 0.04115 * 15 13 12 17 17 C 1.53993 * 104.67163 * 149.08312 * 16 15 13 18 18 C 1.52999 * 109.22490 * 148.19671 * 17 16 15 19 19 O 1.42901 * 109.47421 * 66.18472 * 18 17 16 20 20 C 1.51699 * 107.95882 * 267.76871 * 17 16 15 21 21 C 1.53132 * 111.91103 * 157.55963 * 20 17 16 22 22 C 1.53317 * 107.40772 * 299.17698 * 21 20 17 23 23 C 1.52489 * 108.10049 * 67.74744 * 22 21 20 24 24 C 1.49900 * 112.92178 * 304.11303 * 23 22 21 25 25 C 1.53003 * 106.36597 * 156.27195 * 24 23 22 26 26 O 1.42900 * 109.47379 * 59.29863 * 25 24 23 27 27 C 1.47221 * 126.14462 * 179.97438 * 15 13 12 28 28 H 0.97001 * 119.99935 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.47581 * 59.99994 * 9 7 2 30 30 H 1.08993 * 109.46797 * 299.99258 * 9 7 2 31 31 H 1.08999 * 109.46818 * 59.99622 * 10 9 7 32 32 H 1.09002 * 109.46872 * 299.99426 * 10 9 7 33 33 H 1.08992 * 109.47363 * 59.99713 * 11 10 9 34 34 H 1.09002 * 109.46915 * 299.99332 * 11 10 9 35 35 H 1.08992 * 109.47601 * 59.99518 * 12 11 10 36 36 H 1.09002 * 109.46489 * 299.99252 * 12 11 10 37 37 H 1.09004 * 110.31477 * 268.51820 * 16 15 13 38 38 H 1.08992 * 110.32229 * 30.60950 * 16 15 13 39 39 H 1.09000 * 109.47053 * 186.18127 * 18 17 16 40 40 H 1.09004 * 109.47397 * 306.17895 * 18 17 16 41 41 H 0.96702 * 114.00074 * 180.02562 * 19 18 17 42 42 H 1.09005 * 108.87406 * 276.96908 * 20 17 16 43 43 H 1.08999 * 108.87069 * 35.39938 * 20 17 16 44 44 H 1.08998 * 109.22873 * 180.29381 * 21 20 17 45 45 H 1.08994 * 111.11174 * 59.13151 * 21 20 17 46 46 H 1.09002 * 109.74510 * 308.07919 * 22 21 20 47 47 H 1.09000 * 109.74357 * 187.40876 * 22 21 20 48 48 H 1.08994 * 108.79556 * 65.00542 * 23 22 21 49 49 H 1.09001 * 108.79469 * 183.34231 * 23 22 21 50 50 H 1.08997 * 109.47481 * 179.30578 * 25 24 23 51 51 H 1.09005 * 109.47333 * 299.29920 * 25 24 23 52 52 H 0.96698 * 114.00288 * 180.02562 * 26 25 24 53 53 H 1.08999 * 109.97058 * 79.32382 * 27 15 13 54 54 H 1.08999 * 109.97403 * 318.05378 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5082 -7.4551 0.0005 15 7 2.3950 -8.6223 0.0005 16 6 3.8600 -8.7801 0.0014 17 6 4.1104 -10.0929 0.7665 18 6 5.3604 -10.7730 0.2045 19 8 6.5080 -9.9701 0.4883 20 6 4.3204 -9.7491 2.2290 21 6 4.0323 -10.9430 3.1437 22 6 2.5645 -11.3349 2.9378 23 6 2.4162 -11.8910 1.5257 24 6 2.8890 -10.9375 0.4701 25 6 3.2463 -11.7882 -0.7504 26 8 2.0933 -12.5162 -1.1778 27 6 1.7997 -9.9688 0.0011 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5566 0.8903 31 1 2.8720 -3.6042 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 0.8540 -5.0445 -0.8902 34 1 0.8535 -5.0451 0.8897 35 1 3.1006 -6.0923 0.8908 36 1 3.1017 -6.0922 -0.8891 37 1 4.2341 -8.8466 -1.0203 38 1 4.3303 -7.9463 0.5224 39 1 5.4795 -11.7531 0.6663 40 1 5.2566 -10.8899 -0.8743 41 1 7.3385 -10.3409 0.1599 42 1 5.3592 -9.4532 2.3760 43 1 3.6764 -8.9093 2.4898 44 1 4.1912 -10.6472 4.1807 45 1 4.6756 -11.7885 2.9000 46 1 1.9289 -10.4573 3.0566 47 1 2.2811 -12.0959 3.6649 48 1 2.9920 -12.8132 1.4492 49 1 1.3653 -12.1180 1.3462 50 1 3.5868 -11.1401 -1.5580 51 1 4.0401 -12.4871 -0.4864 52 1 2.2469 -13.0787 -1.9492 53 1 1.4752 -10.2327 -1.0055 54 1 0.9525 -10.0010 0.6862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120809881.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -184.963210 kcal Electronic energy + Delta-G solvation = -31245.128416 eV Core-core repulsion = 27179.571462 eV Total energy + Delta-G solvation = -4065.556954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.65361 -40.29694 -37.71035 -37.07521 -36.69051 -36.36443 -34.64361 -33.29072 -32.99361 -31.52383 -28.71035 -27.89015 -27.03256 -25.90030 -25.73712 -23.84693 -22.37784 -22.02962 -21.77857 -20.38411 -18.97137 -18.67455 -18.43195 -17.83210 -17.53973 -17.36107 -16.70207 -16.54735 -16.42432 -16.11218 -15.90053 -15.54125 -15.26077 -15.12611 -14.56469 -14.35069 -14.12165 -14.05052 -13.79389 -13.67605 -13.63232 -13.49798 -13.34742 -13.08892 -12.87196 -12.82837 -12.76754 -12.65746 -12.32054 -12.19757 -12.17177 -11.98503 -11.96866 -11.42048 -11.40338 -11.35808 -11.17670 -11.09592 -10.95444 -10.85390 -10.78597 -10.56633 -10.52477 -9.74816 -8.19390 -6.31773 1.39787 1.41156 1.54318 1.54714 1.90338 2.41517 2.99658 3.10565 3.13271 3.35279 3.58320 3.73981 3.85331 3.96412 3.97285 3.99452 4.06851 4.08951 4.21106 4.28555 4.36299 4.40552 4.42100 4.54042 4.55152 4.55951 4.61399 4.66382 4.69241 4.74787 4.76878 4.80343 4.83231 4.86962 4.96561 5.02565 5.09651 5.14072 5.18168 5.23983 5.28791 5.31335 5.32978 5.34849 5.50369 5.53361 5.54782 5.75727 5.86492 6.24220 6.41469 6.86586 6.92794 7.03771 7.08971 7.37893 8.93285 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.002153 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.268604 B =13001.720373 C =13472.912845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.121 4.121 13 C 0.523 3.477 14 O -0.589 6.589 15 N -0.619 5.619 16 C 0.105 3.895 17 C -0.046 4.046 18 C 0.086 3.914 19 O -0.584 6.584 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.043 4.043 25 C 0.073 3.927 26 O -0.589 6.589 27 C 0.120 3.880 28 H 0.263 0.737 29 H -0.015 1.015 30 H -0.016 1.016 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.080 0.920 52 H 0.398 0.602 53 H 0.068 0.932 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.986 -34.430 0.393 38.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.161 4.161 13 C 0.314 3.686 14 O -0.470 6.470 15 N -0.353 5.353 16 C -0.017 4.017 17 C -0.047 4.047 18 C 0.008 3.992 19 O -0.393 6.393 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.162 4.162 23 C -0.126 4.126 24 C -0.044 4.044 25 C -0.004 4.004 26 O -0.398 6.398 27 C -0.003 4.003 28 H 0.072 0.928 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.250 0.750 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.098 0.902 52 H 0.248 0.752 53 H 0.086 0.914 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.463 -33.568 1.138 37.405 hybrid contribution -0.120 0.622 -0.745 0.978 sum 16.343 -32.946 0.393 36.779 Atomic orbital electron populations 1.70149 1.08115 1.27717 1.51963 1.26118 0.95800 1.03821 0.94762 0.85309 0.79188 0.78276 0.77716 1.18034 1.20385 1.20439 1.21769 0.93747 0.92135 1.50144 0.91534 1.19053 0.94649 0.93788 0.94316 1.21437 0.97816 0.92539 1.01339 1.21249 0.97389 0.93609 1.01026 1.21636 0.98905 0.89374 1.06144 1.20949 0.87283 0.85617 0.74774 1.90686 1.16303 1.87852 1.52109 1.48665 1.08750 1.05102 1.72736 1.22674 0.78605 0.99007 1.01428 1.20460 0.93589 0.93717 0.96921 1.22420 0.84192 0.93270 0.99268 1.86436 1.18377 1.51519 1.82958 1.21259 1.02505 0.97972 0.92301 1.21582 0.95905 0.98025 0.99267 1.21572 0.97284 1.00430 0.96914 1.20656 1.01660 0.97583 0.92708 1.19996 0.93437 0.94146 0.96821 1.22925 0.87991 0.94478 0.95033 1.86469 1.36862 1.63492 1.52974 1.21980 0.96386 0.80939 1.00984 0.92834 0.99680 0.99757 0.92106 0.91968 0.93767 0.93964 0.86980 0.86644 0.89618 0.89286 0.91210 0.91321 0.75025 0.89987 0.94122 0.91729 0.89896 0.94394 0.90673 0.89600 0.92533 0.92826 0.90231 0.75230 0.91430 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.24 13.29 21.45 0.28 -59.95 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.09 -4.04 5.15 30.60 0.16 -3.88 16 11 C -0.09 -3.73 4.50 30.59 0.14 -3.59 16 12 C -0.12 -3.54 4.66 29.85 0.14 -3.40 16 13 C 0.52 17.07 7.86 87.66 0.69 17.76 16 14 O -0.59 -25.17 16.33 -3.02 -0.05 -25.22 16 15 N -0.62 -15.26 3.31 -815.62 -2.70 -17.96 16 16 C 0.10 1.74 5.20 86.55 0.45 2.19 16 17 C -0.05 -0.58 0.41 -52.79 -0.02 -0.60 16 18 C 0.09 0.53 4.48 71.98 0.32 0.85 16 19 O -0.58 -4.33 12.13 -148.98 -1.81 -6.14 16 20 C -0.10 -1.51 4.48 30.21 0.14 -1.37 16 21 C -0.11 -1.33 6.00 30.74 0.18 -1.14 16 22 C -0.12 -1.80 5.99 30.53 0.18 -1.62 16 23 C -0.09 -1.21 4.14 29.43 0.12 -1.09 16 24 C -0.04 -0.61 0.57 -53.65 -0.03 -0.64 16 25 C 0.07 0.65 3.75 71.98 0.27 0.92 16 26 O -0.59 -6.65 12.20 -148.98 -1.82 -8.47 16 27 C 0.12 2.76 5.84 86.29 0.50 3.26 16 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 29 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.04 1.88 8.10 -2.39 -0.02 1.87 16 34 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.11 2.78 7.83 -2.39 -0.02 2.76 16 36 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.09 1.17 7.81 -2.39 -0.02 1.16 16 38 H 0.09 1.50 6.91 -2.39 -0.02 1.49 16 39 H 0.07 0.21 7.42 -2.39 -0.02 0.20 16 40 H 0.07 0.24 5.88 -2.38 -0.01 0.22 16 41 H 0.40 -0.43 9.12 -74.06 -0.68 -1.11 16 42 H 0.08 1.19 6.81 -2.38 -0.02 1.17 16 43 H 0.04 0.80 7.79 -2.39 -0.02 0.78 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.70 8.03 -2.39 -0.02 0.68 16 46 H 0.04 0.75 8.11 -2.39 -0.02 0.73 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 0.82 7.60 -2.39 -0.02 0.81 16 49 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 50 H 0.05 0.44 6.92 -2.39 -0.02 0.42 16 51 H 0.08 0.27 6.32 -2.38 -0.02 0.26 16 52 H 0.40 0.97 9.12 -74.06 -0.68 0.30 16 53 H 0.07 1.65 6.94 -2.39 -0.02 1.63 16 54 H 0.05 1.31 7.72 -2.39 -0.02 1.29 16 Total: -1.00 -83.85 408.08 -0.44 -84.29 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -0.46 Total: 8.77 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.09 Total: -22.95 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.41 Total: -77.91 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -3.67 Total: -39.83 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -83.85 -0.44 -84.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120809881.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.677 kcal (2) G-P(sol) polarization free energy of solvation -83.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds