Wall clock time and date at job start Sat Apr 11 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 114.00031 * 2 1 4 4 C 1.50694 * 109.47313 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00131 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00331 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00310 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46956 * 180.02562 * 7 6 4 9 9 C 1.50705 * 109.47269 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99675 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00468 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00155 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46956 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.46898 * 179.97438 * 13 12 11 15 15 C 1.29453 * 117.69778 * 95.00126 * 14 13 12 16 16 C 1.50314 * 123.65486 * 181.13771 * 15 14 13 17 17 N 1.47126 * 109.10610 * 348.54061 * 16 15 14 18 18 C 1.36937 * 121.53633 * 223.15752 * 17 16 15 19 19 H 1.07997 * 119.99691 * 156.35057 * 18 17 16 20 20 C 1.38812 * 119.99919 * 336.35140 * 18 17 16 21 21 N 1.31617 * 120.00056 * 344.28136 * 20 18 17 22 22 Si 1.86801 * 120.00087 * 164.27882 * 20 18 17 23 23 H 1.48495 * 109.46836 * 94.57576 * 22 20 18 24 24 H 1.48492 * 109.47207 * 214.57842 * 22 20 18 25 25 H 1.48505 * 109.46960 * 334.57989 * 22 20 18 26 26 C 1.47346 * 117.08841 * 43.37697 * 17 16 15 27 27 C 1.49970 * 117.69333 * 275.01852 * 14 13 12 28 28 H 1.08999 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46778 * 299.99943 * 1 2 3 30 30 H 1.08992 * 109.47140 * 60.00046 * 1 2 3 31 31 H 1.09003 * 109.47020 * 59.99923 * 3 2 1 32 32 H 1.08995 * 109.46828 * 300.00359 * 3 2 1 33 33 H 0.97001 * 119.99664 * 359.97438 * 6 4 3 34 34 H 1.08996 * 109.46889 * 59.99804 * 7 6 4 35 35 H 1.08995 * 109.46894 * 299.99561 * 7 6 4 36 36 H 1.08996 * 109.47512 * 60.00148 * 8 7 6 37 37 H 1.09008 * 109.47165 * 299.99486 * 8 7 6 38 38 H 0.97005 * 119.99630 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.46889 * 60.00251 * 12 11 9 40 40 H 1.09008 * 109.46764 * 300.00217 * 12 11 9 41 41 H 1.09003 * 109.47322 * 59.99823 * 13 12 11 42 42 H 1.08999 * 109.47397 * 299.99550 * 13 12 11 43 43 H 1.07999 * 118.16688 * 0.85284 * 15 14 13 44 44 H 1.09007 * 109.52348 * 108.64837 * 16 15 14 45 45 H 1.09001 * 109.52266 * 228.83155 * 16 15 14 46 46 H 0.97002 * 120.00389 * 180.02562 * 21 20 18 47 47 H 1.08993 * 109.77660 * 178.40331 * 26 17 16 48 48 H 1.09000 * 109.77612 * 57.59524 * 26 17 16 49 49 H 1.09000 * 109.31771 * 281.29104 * 27 14 13 50 50 H 1.09004 * 109.31612 * 40.71818 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0342 0.0916 0.0006 6 7 4.2765 2.2969 0.0013 7 6 5.7369 2.1812 0.0013 8 6 6.3591 3.5790 0.0027 9 6 7.8615 3.4601 0.0021 10 8 8.3831 2.3652 0.0003 11 7 8.6254 4.5704 0.0027 12 6 10.0858 4.4548 0.0027 13 6 10.7080 5.8525 0.0040 14 6 12.2104 5.7335 0.0046 15 6 12.8186 5.7864 -1.1369 16 6 14.3080 5.6574 -1.2940 17 7 14.9413 5.7450 0.0311 18 6 16.0755 6.4846 0.2354 19 1 16.3097 6.8522 1.2235 20 6 16.9241 6.7620 -0.8276 21 7 16.8224 6.0770 -1.9469 22 14 18.2103 8.1074 -0.6695 23 1 19.5015 7.5101 -0.2440 24 1 18.3850 8.7817 -1.9809 25 1 17.7667 9.0998 0.3423 26 6 14.3048 4.9974 1.1297 27 6 12.8954 5.5618 1.3276 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8593 3.1726 0.0009 34 1 6.0585 1.6408 -0.8889 35 1 6.0584 1.6400 0.8911 36 1 6.0374 4.1190 0.8932 37 1 6.0376 4.1207 -0.8869 38 1 8.2082 5.4461 0.0038 39 1 10.4074 3.9143 -0.8875 40 1 10.4074 3.9134 0.8925 41 1 10.3863 6.3927 0.8944 42 1 10.3865 6.3942 -0.8856 43 1 12.2223 5.9267 -2.0263 44 1 14.5441 4.6967 -1.7517 45 1 14.6788 6.4641 -1.9263 46 1 17.4156 6.2706 -2.6896 47 1 14.8838 5.1220 2.0447 48 1 14.2458 3.9402 0.8708 49 1 12.9609 6.5280 1.8279 50 1 12.3164 4.8768 1.9471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160285122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:32 Heat of formation + Delta-G solvation = -85.353823 kcal Electronic energy + Delta-G solvation = -27906.853935 eV Core-core repulsion = 23742.076025 eV Total energy + Delta-G solvation = -4164.777911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.35843 -39.78970 -38.01046 -37.87332 -35.74985 -35.30794 -33.60341 -31.95610 -31.27446 -29.87977 -29.35304 -28.50658 -26.52215 -25.44974 -23.97375 -22.89615 -22.36705 -21.27634 -21.01097 -20.43086 -17.93527 -17.63531 -17.47100 -17.00903 -16.91274 -16.30435 -16.22143 -15.61054 -15.58965 -15.28137 -14.99925 -14.86597 -14.47422 -14.10585 -13.74925 -13.69006 -13.53517 -13.42705 -13.27422 -12.81169 -12.63037 -12.37221 -12.22336 -12.01661 -12.01106 -11.90620 -11.57777 -11.42504 -11.02173 -10.91416 -10.71822 -10.37042 -10.36794 -10.30618 -10.25536 -10.02952 -9.80524 -9.55406 -9.54611 -9.21010 -8.65066 -7.92956 -6.72250 -5.78152 -3.16403 2.18297 2.22885 2.40222 2.81283 3.12541 3.38043 3.44962 3.47217 3.56892 4.13078 4.33151 4.49537 4.50347 4.54046 4.55348 4.59436 4.76501 4.81475 4.93058 5.07987 5.14383 5.16340 5.26026 5.40445 5.43701 5.54922 5.59920 5.63227 5.77920 5.89231 5.98687 6.02702 6.13925 6.20391 6.29030 6.40013 6.40168 6.55733 6.79464 6.91210 6.97645 7.22857 7.25883 7.33613 7.40990 7.75572 7.77539 7.88204 8.00104 8.39627 9.21143 9.84198 10.43175 11.32353 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.049070 B = 0.001309 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.472571 B =21392.214141 C =21426.157526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.512 6.512 6 N -0.732 5.732 7 C 0.135 3.865 8 C -0.153 4.153 9 C 0.513 3.487 10 O -0.533 6.533 11 N -0.729 5.729 12 C 0.123 3.877 13 C -0.091 4.091 14 C -0.144 4.144 15 C -0.145 4.145 16 C 0.196 3.804 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.068 0.932 20 C -0.001 4.001 21 N -0.909 5.909 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.142 3.858 27 C -0.091 4.091 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.400 0.600 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.399 0.601 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.091 0.909 46 H 0.253 0.747 47 H 0.056 0.944 48 H 0.023 0.977 49 H 0.062 0.938 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.339 -1.082 3.636 33.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.385 6.385 6 N -0.387 5.387 7 C 0.011 3.989 8 C -0.193 4.193 9 C 0.298 3.702 10 O -0.410 6.410 11 N -0.381 5.381 12 C 0.000 4.000 13 C -0.129 4.129 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.071 3.929 17 N -0.319 5.319 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.015 3.985 27 C -0.130 4.130 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.233 0.767 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.041 0.959 49 H 0.080 0.920 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -32.321 -2.857 3.490 32.635 hybrid contribution -0.011 1.986 -0.094 1.989 sum -32.332 -0.871 3.396 32.522 Atomic orbital electron populations 1.22859 0.80150 1.03529 1.00159 1.88038 1.19955 1.25046 1.95421 1.22226 0.91469 0.87226 1.02689 1.20258 0.88704 0.84572 0.76919 1.90788 1.74522 1.26419 1.46779 1.45843 1.07184 1.08751 1.76941 1.21052 0.77691 0.95614 1.04507 1.21803 0.93235 0.99152 1.05144 1.20281 0.88820 0.84570 0.76560 1.90786 1.74979 1.26460 1.48734 1.46096 1.07816 1.08680 1.75475 1.21471 0.77533 0.98072 1.02926 1.20901 0.94718 0.95144 1.02088 1.20224 0.92336 1.05941 0.95950 1.23119 0.99869 0.97471 0.96018 1.19724 0.84338 1.00811 0.88037 1.44169 1.27985 1.55047 1.04651 1.19189 0.98165 1.24710 0.95431 0.91382 1.24975 0.97830 0.99727 0.97389 1.70018 1.40258 1.40217 1.04988 0.86255 0.81518 0.81923 0.76965 1.21498 1.21588 1.20508 1.20960 0.91201 0.93814 0.92480 1.20756 0.97894 1.00494 0.93839 0.88947 0.93723 0.93710 0.90135 0.90120 0.76614 0.90222 0.90238 0.88122 0.88118 0.76688 0.91176 0.91168 0.91491 0.91561 0.89097 0.94410 0.89124 0.93646 0.92548 0.95851 0.91965 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.37 -3.21 10.24 -55.14 -0.56 -3.77 16 3 C 0.04 0.24 6.42 36.00 0.23 0.47 16 4 C 0.51 4.60 7.91 -10.99 -0.09 4.51 16 5 O -0.51 -7.56 16.50 -14.36 -0.24 -7.80 16 6 N -0.73 -4.23 5.56 -60.30 -0.33 -4.57 16 7 C 0.13 1.10 4.96 -4.04 -0.02 1.08 16 8 C -0.15 -0.82 5.81 -27.88 -0.16 -0.98 16 9 C 0.51 5.21 7.83 -10.98 -0.09 5.13 16 10 O -0.53 -8.17 15.98 5.56 0.09 -8.08 16 11 N -0.73 -6.51 5.56 -60.29 -0.33 -6.85 16 12 C 0.12 1.49 5.66 -4.04 -0.02 1.47 16 13 C -0.09 -1.10 5.32 -27.88 -0.15 -1.25 16 14 C -0.14 -2.42 5.11 -100.99 -0.52 -2.94 16 15 C -0.15 -2.77 9.47 -35.78 -0.34 -3.11 16 16 C 0.20 4.71 5.25 -5.04 -0.03 4.68 16 17 N -0.60 -15.09 3.01 -173.57 -0.52 -15.61 16 18 C -0.25 -6.78 9.71 -15.06 -0.15 -6.93 16 19 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 20 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 21 N -0.91 -26.41 11.07 55.49 0.61 -25.79 16 22 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.14 3.01 6.57 -3.53 -0.02 2.98 16 27 C -0.09 -1.58 5.95 -28.18 -0.17 -1.75 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.40 0.65 8.47 -40.82 -0.35 0.30 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.30 8.14 -51.92 -0.42 -0.12 16 38 H 0.40 2.21 8.47 -40.82 -0.35 1.87 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.95 8.08 -51.92 -0.42 0.53 16 41 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16 43 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 44 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 45 H 0.09 2.41 6.39 -51.93 -0.33 2.08 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 413.84 15.07 6.24 6.24 Total: -1.00 -38.01 413.84 -9.12 -47.13 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -8.55 Total: -2.05 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.49 Total: 4.48 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.58 Total: -52.82 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.71 Total: -19.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -38.01 -9.12 -47.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160285122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.221 kcal (2) G-P(sol) polarization free energy of solvation -38.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds