Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 114.00031 * 2 1 4 4 C 1.50694 * 109.47313 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00131 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00331 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00310 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46956 * 180.02562 * 7 6 4 9 9 C 1.50705 * 109.47269 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99675 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00468 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00155 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.46956 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.46898 * 179.97438 * 13 12 11 15 15 C 1.29453 * 117.69778 * 95.00126 * 14 13 12 16 16 C 1.50314 * 123.65486 * 181.13771 * 15 14 13 17 17 N 1.47126 * 109.10610 * 348.54061 * 16 15 14 18 18 C 1.36937 * 121.53633 * 223.15752 * 17 16 15 19 19 H 1.07997 * 119.99691 * 156.35057 * 18 17 16 20 20 C 1.38812 * 119.99919 * 336.35140 * 18 17 16 21 21 N 1.31617 * 120.00056 * 344.28136 * 20 18 17 22 22 Si 1.86801 * 120.00087 * 164.27882 * 20 18 17 23 23 H 1.48495 * 109.46836 * 94.57576 * 22 20 18 24 24 H 1.48492 * 109.47207 * 214.57842 * 22 20 18 25 25 H 1.48505 * 109.46960 * 334.57989 * 22 20 18 26 26 C 1.47346 * 117.08841 * 43.37697 * 17 16 15 27 27 C 1.49970 * 117.69333 * 275.01852 * 14 13 12 28 28 H 1.08999 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46778 * 299.99943 * 1 2 3 30 30 H 1.08992 * 109.47140 * 60.00046 * 1 2 3 31 31 H 1.09003 * 109.47020 * 59.99923 * 3 2 1 32 32 H 1.08995 * 109.46828 * 300.00359 * 3 2 1 33 33 H 0.97001 * 119.99664 * 359.97438 * 6 4 3 34 34 H 1.08996 * 109.46889 * 59.99804 * 7 6 4 35 35 H 1.08995 * 109.46894 * 299.99561 * 7 6 4 36 36 H 1.08996 * 109.47512 * 60.00148 * 8 7 6 37 37 H 1.09008 * 109.47165 * 299.99486 * 8 7 6 38 38 H 0.97005 * 119.99630 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.46889 * 60.00251 * 12 11 9 40 40 H 1.09008 * 109.46764 * 300.00217 * 12 11 9 41 41 H 1.09003 * 109.47322 * 59.99823 * 13 12 11 42 42 H 1.08999 * 109.47397 * 299.99550 * 13 12 11 43 43 H 1.07999 * 118.16688 * 0.85284 * 15 14 13 44 44 H 1.09007 * 109.52348 * 108.64837 * 16 15 14 45 45 H 1.09001 * 109.52266 * 228.83155 * 16 15 14 46 46 H 0.97002 * 120.00389 * 180.02562 * 21 20 18 47 47 H 1.08993 * 109.77660 * 178.40331 * 26 17 16 48 48 H 1.09000 * 109.77612 * 57.59524 * 26 17 16 49 49 H 1.09000 * 109.31771 * 281.29104 * 27 14 13 50 50 H 1.09004 * 109.31612 * 40.71818 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0342 0.0916 0.0006 6 7 4.2765 2.2969 0.0013 7 6 5.7369 2.1812 0.0013 8 6 6.3591 3.5790 0.0027 9 6 7.8615 3.4601 0.0021 10 8 8.3831 2.3652 0.0003 11 7 8.6254 4.5704 0.0027 12 6 10.0858 4.4548 0.0027 13 6 10.7080 5.8525 0.0040 14 6 12.2104 5.7335 0.0046 15 6 12.8186 5.7864 -1.1369 16 6 14.3080 5.6574 -1.2940 17 7 14.9413 5.7450 0.0311 18 6 16.0755 6.4846 0.2354 19 1 16.3097 6.8522 1.2235 20 6 16.9241 6.7620 -0.8276 21 7 16.8224 6.0770 -1.9469 22 14 18.2103 8.1074 -0.6695 23 1 19.5015 7.5101 -0.2440 24 1 18.3850 8.7817 -1.9809 25 1 17.7667 9.0998 0.3423 26 6 14.3048 4.9974 1.1297 27 6 12.8954 5.5618 1.3276 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8593 3.1726 0.0009 34 1 6.0585 1.6408 -0.8889 35 1 6.0584 1.6400 0.8911 36 1 6.0374 4.1190 0.8932 37 1 6.0376 4.1207 -0.8869 38 1 8.2082 5.4461 0.0038 39 1 10.4074 3.9143 -0.8875 40 1 10.4074 3.9134 0.8925 41 1 10.3863 6.3927 0.8944 42 1 10.3865 6.3942 -0.8856 43 1 12.2223 5.9267 -2.0263 44 1 14.5441 4.6967 -1.7517 45 1 14.6788 6.4641 -1.9263 46 1 17.4156 6.2706 -2.6896 47 1 14.8838 5.1220 2.0447 48 1 14.2458 3.9402 0.8708 49 1 12.9609 6.5280 1.8279 50 1 12.3164 4.8768 1.9471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160285122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -115.082533 kcal Electronic energy + Delta-G solvation = -27908.143069 eV Core-core repulsion = 23742.076025 eV Total energy + Delta-G solvation = -4166.067044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08352 -40.57959 -39.46339 -38.44124 -36.82588 -36.20017 -35.10427 -33.24389 -32.40795 -31.48151 -30.31861 -29.41837 -27.28669 -26.72175 -25.03796 -24.38273 -23.62329 -22.45588 -21.93098 -21.30168 -19.46242 -18.54607 -18.15868 -17.62696 -17.49323 -17.41459 -17.06103 -16.87672 -16.73620 -16.25410 -16.01093 -15.76371 -15.48303 -15.40033 -15.21223 -15.10752 -14.49295 -14.47651 -14.22130 -14.02969 -13.83545 -13.37091 -13.21525 -13.13441 -12.96239 -12.82775 -12.77548 -12.57604 -12.46726 -12.34327 -12.32899 -12.16909 -11.88241 -11.66999 -11.27606 -11.07711 -10.84868 -10.75027 -10.68740 -10.22167 -10.07819 -9.48027 -8.76130 -7.88616 -5.30552 1.41422 1.46774 1.47528 1.53781 1.58129 1.64130 1.71228 2.36573 2.51019 3.16430 3.28492 3.59758 3.66367 3.81286 3.94592 3.98620 4.07731 4.15224 4.18428 4.22844 4.30706 4.31745 4.51352 4.53386 4.55731 4.59837 4.60445 4.70851 4.84951 4.86846 4.89529 4.91842 4.94059 4.99318 5.11631 5.18432 5.23863 5.31940 5.41290 5.45459 5.50053 5.60332 5.88718 6.06201 6.29276 6.32988 6.53217 6.60137 7.12466 7.22616 7.30187 7.82527 8.37895 9.20200 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.049070 B = 0.001309 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.472571 B =21392.214141 C =21426.157526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.047 3.953 4 C 0.502 3.498 5 O -0.584 6.584 6 N -0.707 5.707 7 C 0.137 3.863 8 C -0.132 4.132 9 C 0.506 3.494 10 O -0.595 6.595 11 N -0.712 5.712 12 C 0.130 3.870 13 C -0.077 4.077 14 C -0.122 4.122 15 C -0.175 4.175 16 C 0.206 3.794 17 N -0.615 5.615 18 C -0.260 4.260 19 H 0.072 0.928 20 C -0.056 4.056 21 N -0.942 5.942 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.267 1.267 26 C 0.133 3.867 27 C -0.087 4.087 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.426 0.574 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.421 0.579 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.000 1.000 45 H 0.055 0.945 46 H 0.249 0.751 47 H 0.058 0.942 48 H 0.014 0.986 49 H 0.070 0.930 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.914 2.101 5.009 37.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.032 4.032 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.012 3.988 8 C -0.172 4.172 9 C 0.294 3.706 10 O -0.475 6.475 11 N -0.365 5.365 12 C 0.006 3.994 13 C -0.114 4.114 14 C -0.122 4.122 15 C -0.194 4.194 16 C 0.081 3.919 17 N -0.339 5.339 18 C -0.390 4.390 19 H 0.090 0.910 20 C -0.250 4.250 21 N -0.589 5.589 22 Si 0.799 3.201 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.192 1.192 26 C 0.008 3.992 27 C -0.125 4.125 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.259 0.741 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.132 0.868 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.088 0.912 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -35.967 0.431 4.891 36.301 hybrid contribution 1.080 0.940 -0.441 1.498 sum -34.887 1.371 4.450 35.196 Atomic orbital electron populations 1.23024 0.78180 1.04028 1.01821 1.87978 1.22253 1.27249 1.95846 1.22417 0.88310 0.86675 1.05837 1.21133 0.90593 0.84020 0.75382 1.90758 1.76004 1.29198 1.50285 1.45582 1.06013 1.09469 1.75202 1.20815 0.79227 0.97161 1.01596 1.21741 0.88995 0.97638 1.08830 1.21137 0.90837 0.83665 0.74980 1.90778 1.76401 1.28884 1.51476 1.45855 1.06342 1.09702 1.74572 1.21143 0.79617 0.97498 1.01149 1.20793 0.90638 0.95459 1.04512 1.20618 0.95306 1.01690 0.94633 1.22815 0.96790 1.01590 0.98243 1.19370 0.87863 0.97626 0.87048 1.44465 1.27995 1.55538 1.05893 1.19568 0.98920 1.24831 0.95663 0.91032 1.25789 1.00161 1.01898 0.97159 1.70203 1.41281 1.41783 1.05660 0.85199 0.78796 0.79227 0.76874 1.21356 1.21807 1.19207 1.21164 0.93512 0.93227 0.91291 1.20710 0.95609 1.01339 0.94864 0.89252 0.91970 0.92001 0.86683 0.86736 0.73562 0.93479 0.93311 0.84108 0.84317 0.74061 0.93670 0.92648 0.88608 0.89570 0.86815 0.98248 0.92638 0.94144 0.92293 0.96744 0.91159 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -6.90 10.24 -129.94 -1.33 -8.23 16 3 C 0.05 0.40 6.42 71.23 0.46 0.86 16 4 C 0.50 8.67 7.91 87.66 0.69 9.36 16 5 O -0.58 -18.25 16.50 15.99 0.26 -17.98 16 6 N -0.71 -6.61 5.56 -463.08 -2.57 -9.19 16 7 C 0.14 2.14 4.96 86.38 0.43 2.57 16 8 C -0.13 -0.93 5.81 29.85 0.17 -0.75 16 9 C 0.51 9.26 7.83 87.66 0.69 9.95 16 10 O -0.59 -18.52 15.98 -3.04 -0.05 -18.57 16 11 N -0.71 -10.24 5.56 -463.06 -2.57 -12.82 16 12 C 0.13 2.85 5.66 86.38 0.49 3.34 16 13 C -0.08 -1.55 5.32 29.85 0.16 -1.39 16 14 C -0.12 -3.85 5.11 -15.14 -0.08 -3.92 16 15 C -0.18 -6.67 9.47 27.10 0.26 -6.41 16 16 C 0.21 10.40 5.25 85.39 0.45 10.85 16 17 N -0.61 -32.01 3.01 -703.07 -2.12 -34.13 16 18 C -0.26 -14.64 9.71 84.03 0.82 -13.83 16 19 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 20 C -0.06 -3.16 5.01 84.86 0.43 -2.74 16 21 N -0.94 -57.09 11.07 21.65 0.24 -56.85 16 22 Si 0.97 45.37 29.58 68.60 2.03 47.40 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.13 5.67 6.57 86.25 0.57 6.24 16 27 C -0.09 -2.83 5.95 29.65 0.18 -2.66 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.43 -0.50 8.47 -92.71 -0.79 -1.28 16 34 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.14 0.04 8.14 -2.38 -0.02 0.02 16 38 H 0.42 2.41 8.47 -92.70 -0.79 1.62 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.40 8.08 -2.38 -0.02 1.38 16 41 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 42 H 0.09 1.51 7.78 -2.39 -0.02 1.49 16 43 H 0.11 3.74 7.73 -2.91 -0.02 3.72 16 44 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 45 H 0.06 3.13 6.39 -2.39 -0.02 3.11 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16 48 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.08 2.29 8.08 -2.38 -0.02 2.27 16 Total: -1.00 -93.04 413.84 0.21 -92.83 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -0.63 Total: 4.66 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.95 Total: 12.88 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -7.02 Total: -112.98 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.11 Total: -44.79 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -93.04 0.21 -92.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160285122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.257 kcal (2) G-P(sol) polarization free energy of solvation -93.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds