Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99710 * 2 1 4 4 C 1.52998 * 109.46858 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.34806 * 126.59488 * 125.24713 * 5 4 3 7 7 C 1.36604 * 106.84226 * 180.13108 * 6 5 4 8 8 C 1.47522 * 125.77180 * 179.89585 * 7 6 5 9 9 O 1.21585 * 119.99974 * 359.71957 * 8 7 6 10 10 N 1.34774 * 119.99591 * 179.71498 * 8 7 6 11 11 C 1.46501 * 119.99941 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46828 * 35.00568 * 11 10 8 13 13 C 1.52992 * 109.47432 * 275.00459 * 11 10 8 14 14 C 1.52996 * 109.47377 * 155.00075 * 11 10 8 15 15 C 1.52997 * 109.47131 * 295.00488 * 14 11 10 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 11 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47294 * 179.97438 * 17 16 15 19 19 C 1.36935 * 120.00627 * 179.97438 * 18 17 16 20 20 H 1.08012 * 119.99691 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00809 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00579 * 180.02562 * 21 19 18 23 23 Si 1.86811 * 119.99633 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46906 * 90.00102 * 23 21 19 25 25 H 1.48495 * 109.47152 * 210.00270 * 23 21 19 26 26 H 1.48502 * 109.47012 * 330.00516 * 23 21 19 27 27 N 1.34408 * 108.45205 * 359.63401 * 7 6 5 28 28 N 1.28762 * 109.52333 * 0.22664 * 27 7 6 29 29 H 1.09005 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47211 * 300.00108 * 1 2 3 31 31 H 1.08998 * 109.47456 * 60.00085 * 1 2 3 32 32 H 1.09003 * 109.47318 * 59.99909 * 3 2 1 33 33 H 1.09000 * 109.47301 * 299.99636 * 3 2 1 34 34 H 1.09003 * 109.47080 * 59.99947 * 4 3 2 35 35 H 1.08998 * 109.47741 * 299.99849 * 4 3 2 36 36 H 1.08000 * 126.58208 * 359.97438 * 6 5 4 37 37 H 0.96999 * 120.00658 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.47186 * 59.99610 * 13 11 10 39 39 H 1.08997 * 109.47659 * 179.97438 * 13 11 10 40 40 H 1.09007 * 109.47202 * 299.99880 * 13 11 10 41 41 H 1.08996 * 109.47452 * 175.00488 * 14 11 10 42 42 H 1.09001 * 109.46997 * 55.00062 * 14 11 10 43 43 H 1.09001 * 109.47502 * 60.00153 * 15 14 11 44 44 H 1.09001 * 109.47289 * 299.99950 * 15 14 11 45 45 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 46 46 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 47 47 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 48 48 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 49 49 H 0.97006 * 119.99755 * 359.97438 * 18 17 16 50 50 H 0.97000 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0284 3.0037 0.8840 7 6 5.3058 4.2874 0.5080 8 6 6.2380 5.2038 1.1916 9 8 6.8341 4.8350 2.1850 10 7 6.4289 6.4499 0.7148 11 6 7.3542 7.3603 1.3940 12 1 8.1944 6.7926 1.7939 13 6 6.6258 8.0677 2.5383 14 6 7.8699 8.4004 0.3974 15 6 8.7042 7.7047 -0.6799 16 6 9.2194 8.7447 -1.6769 17 6 10.0532 8.0489 -2.7546 18 7 10.5459 9.0447 -3.7095 19 6 11.3211 8.6532 -4.7683 20 1 11.5696 7.6102 -4.8991 21 6 11.7885 9.5967 -5.6728 22 7 12.5332 9.2203 -6.6907 23 14 11.3593 11.4006 -5.4461 24 1 12.3962 12.0545 -4.6080 25 1 11.3024 12.0663 -6.7723 26 1 10.0381 11.5149 -4.7777 27 7 4.5902 4.5721 -0.5935 28 7 3.8820 3.5485 -0.9231 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8891 35 1 3.8568 0.6440 0.8908 36 1 5.4457 2.4762 1.7289 37 1 5.9531 6.7443 -0.0776 38 1 6.2584 7.3267 3.2483 39 1 7.3143 8.7447 3.0439 40 1 5.7856 8.6355 2.1383 41 1 8.4878 9.1300 0.9207 42 1 7.0249 8.9074 -0.0685 43 1 8.0863 6.9751 -1.2034 44 1 9.5492 7.1976 -0.2141 45 1 8.3741 9.2514 -2.1427 46 1 9.8372 9.4746 -1.1538 47 1 10.8984 7.5419 -2.2892 48 1 9.4350 7.3192 -3.2777 49 1 10.3231 9.9814 -3.5918 50 1 12.8600 9.8797 -7.3225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170720995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = 12.756252 kcal Electronic energy + Delta-G solvation = -28181.911664 eV Core-core repulsion = 24053.680877 eV Total energy + Delta-G solvation = -4128.230787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64134 -39.82739 -38.72719 -37.01382 -35.47289 -35.36654 -33.26480 -31.88980 -31.43884 -30.73047 -29.94799 -27.72252 -27.12088 -24.66607 -24.60966 -23.82674 -22.28485 -21.83518 -20.96547 -20.82805 -20.56706 -18.59003 -17.47853 -17.31161 -17.09322 -16.62240 -16.39023 -16.11697 -15.62373 -15.17653 -15.01889 -14.83265 -14.57158 -14.53300 -14.14613 -14.00207 -13.52637 -13.31286 -13.00544 -12.98608 -12.75619 -12.67373 -12.40137 -12.34512 -12.09277 -11.86615 -11.64067 -11.62690 -11.40974 -11.12298 -10.87632 -10.84165 -10.78587 -10.47030 -10.38591 -10.33076 -10.25656 -10.05230 -9.73510 -9.53607 -9.22862 -8.83359 -7.16338 -5.71448 -3.06315 0.68246 1.36027 1.39135 2.89813 2.99201 3.04706 3.41501 3.44325 3.48778 3.78536 3.86017 4.07249 4.29524 4.41125 4.48860 4.55532 4.61832 4.64206 4.65895 4.74341 4.87376 4.87597 4.97774 5.02347 5.04115 5.23822 5.34286 5.35963 5.42022 5.54632 5.59484 5.64114 5.71099 5.81883 5.86228 5.91958 6.07583 6.13553 6.19755 6.25269 6.29086 6.36374 6.43610 6.84794 6.88584 7.22253 7.56238 7.95584 8.05991 8.47952 9.27777 10.00311 10.20873 11.47202 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.001772 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.294925 B =15799.313228 C =17474.529924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.362 5.362 6 C 0.099 3.901 7 C -0.101 4.101 8 C 0.607 3.393 9 O -0.541 6.541 10 N -0.706 5.706 11 C 0.141 3.859 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.156 3.844 18 N -0.758 5.758 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 N -0.199 5.199 28 N -0.060 5.060 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.207 0.793 37 H 0.409 0.591 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.587 -16.052 22.414 37.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.003 3.997 5 N -0.148 5.148 6 C -0.057 4.057 7 C -0.240 4.240 8 C 0.391 3.609 9 O -0.417 6.417 10 N -0.357 5.357 11 C 0.037 3.963 12 H 0.110 0.890 13 C -0.222 4.222 14 C -0.165 4.165 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 N -0.073 5.073 28 N -0.041 5.041 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.224 0.776 37 H 0.245 0.755 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.715 -16.262 21.716 37.380 hybrid contribution -0.218 1.196 0.428 1.289 sum -25.933 -15.067 22.144 37.281 Atomic orbital electron populations 1.22819 0.79523 1.03391 1.00568 1.87785 1.20899 1.26341 1.95632 1.22614 0.91815 0.85908 1.02450 1.21722 0.93271 0.77889 1.06814 1.50307 1.30439 1.13649 1.20374 1.23410 0.91837 0.94797 0.95685 1.21514 1.07520 0.95666 0.99339 1.16701 0.80119 0.81106 0.82967 1.90809 1.48905 1.76358 1.25626 1.45900 1.45494 1.12642 1.31629 1.21103 0.92091 0.90445 0.92644 0.89023 1.22182 1.00988 1.00678 0.98311 1.21943 1.00383 0.97512 0.96689 1.21524 0.99415 0.98336 0.96086 1.21772 0.99843 0.98278 0.96814 1.20633 0.94987 0.92056 0.89440 1.42738 1.62732 1.04974 1.29908 1.19099 1.22319 0.95413 1.00448 0.89300 1.24680 0.99903 0.97527 0.97244 1.69708 1.39751 1.33105 1.15873 0.86514 0.78123 0.86762 0.76956 1.21108 1.21752 1.20341 1.74673 1.03778 1.19042 1.09800 1.82040 1.20149 0.90484 1.11413 0.88927 0.93687 0.93453 0.92334 0.91147 0.87123 0.86605 0.77638 0.75523 0.92201 0.91390 0.92403 0.90103 0.91226 0.91801 0.91769 0.92140 0.92118 0.95707 0.95761 0.80747 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.12 10.70 -35.23 -0.38 -2.50 16 3 C 0.05 0.23 6.14 37.16 0.23 0.46 16 4 C 0.12 0.50 6.91 -4.04 -0.03 0.47 16 5 N -0.36 -2.59 3.69 -61.06 -0.23 -2.82 16 6 C 0.10 0.73 11.27 -16.84 -0.19 0.54 16 7 C -0.10 -1.04 6.99 -83.55 -0.58 -1.62 16 8 C 0.61 6.88 7.78 -12.48 -0.10 6.79 16 9 O -0.54 -7.28 16.53 5.29 0.09 -7.19 16 10 N -0.71 -7.11 4.53 -54.86 -0.25 -7.36 16 11 C 0.14 1.35 2.57 -67.94 -0.17 1.17 16 12 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 13 C -0.16 -1.37 9.48 37.15 0.35 -1.02 16 14 C -0.13 -1.21 4.75 -26.73 -0.13 -1.34 16 15 C -0.12 -1.41 5.10 -26.73 -0.14 -1.54 16 16 C -0.13 -1.97 5.33 -26.73 -0.14 -2.12 16 17 C 0.16 3.16 6.26 -4.05 -0.03 3.13 16 18 N -0.76 -18.95 5.41 -59.91 -0.32 -19.28 16 19 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 20 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 22 N -0.94 -30.21 13.97 55.49 0.78 -29.43 16 23 Si 0.89 22.71 27.74 -169.99 -4.71 17.99 16 24 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 27 N -0.20 -2.26 12.04 32.85 0.40 -1.86 16 28 N -0.06 -0.63 13.65 60.35 0.82 0.19 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.12 0.18 8.08 -51.93 -0.42 -0.24 16 36 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.41 3.86 8.29 -40.82 -0.34 3.53 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.36 8.70 5.53 -40.82 -0.23 8.47 16 50 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 420.49 15.07 6.34 6.34 Total: -1.00 -36.90 420.49 -6.10 -43.00 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.56 Total: 4.16 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.24 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 1.20 Total: -60.56 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.29 Total: -9.69 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -36.90 -6.10 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170720995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.755 kcal (2) G-P(sol) polarization free energy of solvation -36.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds