Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99710 * 2 1 4 4 C 1.52998 * 109.46858 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.34806 * 126.59488 * 125.24713 * 5 4 3 7 7 C 1.36604 * 106.84226 * 180.13108 * 6 5 4 8 8 C 1.47522 * 125.77180 * 179.89585 * 7 6 5 9 9 O 1.21585 * 119.99974 * 359.71957 * 8 7 6 10 10 N 1.34774 * 119.99591 * 179.71498 * 8 7 6 11 11 C 1.46501 * 119.99941 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46828 * 35.00568 * 11 10 8 13 13 C 1.52992 * 109.47432 * 275.00459 * 11 10 8 14 14 C 1.52996 * 109.47377 * 155.00075 * 11 10 8 15 15 C 1.52997 * 109.47131 * 295.00488 * 14 11 10 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 11 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47294 * 179.97438 * 17 16 15 19 19 C 1.36935 * 120.00627 * 179.97438 * 18 17 16 20 20 H 1.08012 * 119.99691 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00809 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00579 * 180.02562 * 21 19 18 23 23 Si 1.86811 * 119.99633 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46906 * 90.00102 * 23 21 19 25 25 H 1.48495 * 109.47152 * 210.00270 * 23 21 19 26 26 H 1.48502 * 109.47012 * 330.00516 * 23 21 19 27 27 N 1.34408 * 108.45205 * 359.63401 * 7 6 5 28 28 N 1.28762 * 109.52333 * 0.22664 * 27 7 6 29 29 H 1.09005 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47211 * 300.00108 * 1 2 3 31 31 H 1.08998 * 109.47456 * 60.00085 * 1 2 3 32 32 H 1.09003 * 109.47318 * 59.99909 * 3 2 1 33 33 H 1.09000 * 109.47301 * 299.99636 * 3 2 1 34 34 H 1.09003 * 109.47080 * 59.99947 * 4 3 2 35 35 H 1.08998 * 109.47741 * 299.99849 * 4 3 2 36 36 H 1.08000 * 126.58208 * 359.97438 * 6 5 4 37 37 H 0.96999 * 120.00658 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.47186 * 59.99610 * 13 11 10 39 39 H 1.08997 * 109.47659 * 179.97438 * 13 11 10 40 40 H 1.09007 * 109.47202 * 299.99880 * 13 11 10 41 41 H 1.08996 * 109.47452 * 175.00488 * 14 11 10 42 42 H 1.09001 * 109.46997 * 55.00062 * 14 11 10 43 43 H 1.09001 * 109.47502 * 60.00153 * 15 14 11 44 44 H 1.09001 * 109.47289 * 299.99950 * 15 14 11 45 45 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 46 46 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 47 47 H 1.09001 * 109.47289 * 299.99953 * 17 16 15 48 48 H 1.09004 * 109.47261 * 59.99697 * 17 16 15 49 49 H 0.97006 * 119.99755 * 359.97438 * 18 17 16 50 50 H 0.97000 * 120.00140 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0284 3.0037 0.8840 7 6 5.3058 4.2874 0.5080 8 6 6.2380 5.2038 1.1916 9 8 6.8341 4.8350 2.1850 10 7 6.4289 6.4499 0.7148 11 6 7.3542 7.3603 1.3940 12 1 8.1944 6.7926 1.7939 13 6 6.6258 8.0677 2.5383 14 6 7.8699 8.4004 0.3974 15 6 8.7042 7.7047 -0.6799 16 6 9.2194 8.7447 -1.6769 17 6 10.0532 8.0489 -2.7546 18 7 10.5459 9.0447 -3.7095 19 6 11.3211 8.6532 -4.7683 20 1 11.5696 7.6102 -4.8991 21 6 11.7885 9.5967 -5.6728 22 7 12.5332 9.2203 -6.6907 23 14 11.3593 11.4006 -5.4461 24 1 12.3962 12.0545 -4.6080 25 1 11.3024 12.0663 -6.7723 26 1 10.0381 11.5149 -4.7777 27 7 4.5902 4.5721 -0.5935 28 7 3.8820 3.5485 -0.9231 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6436 -0.8891 35 1 3.8568 0.6440 0.8908 36 1 5.4457 2.4762 1.7289 37 1 5.9531 6.7443 -0.0776 38 1 6.2584 7.3267 3.2483 39 1 7.3143 8.7447 3.0439 40 1 5.7856 8.6355 2.1383 41 1 8.4878 9.1300 0.9207 42 1 7.0249 8.9074 -0.0685 43 1 8.0863 6.9751 -1.2034 44 1 9.5492 7.1976 -0.2141 45 1 8.3741 9.2514 -2.1427 46 1 9.8372 9.4746 -1.1538 47 1 10.8984 7.5419 -2.2892 48 1 9.4350 7.3192 -3.2777 49 1 10.3231 9.9814 -3.5918 50 1 12.8600 9.8797 -7.3225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170720995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = -15.069745 kcal Electronic energy + Delta-G solvation = -28183.118290 eV Core-core repulsion = 24053.680877 eV Total energy + Delta-G solvation = -4129.437413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.30961 -40.65567 -39.08902 -38.06876 -36.93227 -35.99959 -34.76746 -33.27335 -32.40202 -31.80199 -30.60456 -29.03662 -27.43822 -25.87609 -25.14271 -24.93568 -23.40070 -22.85356 -22.19152 -21.80526 -21.35684 -19.63244 -19.20067 -17.83951 -17.55156 -17.41860 -16.89954 -16.66291 -16.63341 -16.31738 -16.09000 -15.85768 -15.63988 -15.49118 -15.22201 -14.87546 -14.61536 -14.56736 -14.25587 -14.13359 -13.57133 -13.47639 -13.24438 -13.06245 -12.95215 -12.91199 -12.81625 -12.46823 -12.44256 -12.26722 -12.17934 -12.07455 -11.88533 -11.76067 -11.51407 -11.45413 -11.42084 -11.18884 -10.97682 -10.81470 -10.46486 -10.02703 -9.31679 -8.04439 -5.38792 0.07336 0.58000 0.88767 1.37544 1.42350 1.49928 2.14366 2.23169 2.48140 2.64659 3.15641 3.26543 3.43227 3.50262 3.72572 3.76392 3.90886 3.93455 4.04424 4.07312 4.10225 4.16923 4.35984 4.40666 4.41631 4.46345 4.53363 4.57423 4.59957 4.65508 4.75057 4.80060 4.83190 4.88694 4.94893 4.99935 5.02767 5.13380 5.26489 5.31779 5.35837 5.43061 5.51441 5.58552 5.73041 5.97030 6.19768 6.42848 6.84681 7.06457 7.14260 7.82447 8.03481 9.17234 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.001772 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.294925 B =15799.313228 C =17474.529924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.120 3.880 5 N -0.350 5.350 6 C 0.116 3.884 7 C -0.125 4.125 8 C 0.606 3.394 9 O -0.567 6.567 10 N -0.703 5.703 11 C 0.142 3.858 12 H 0.077 0.923 13 C -0.157 4.157 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.116 4.116 17 C 0.150 3.850 18 N -0.760 5.760 19 C -0.244 4.244 20 H 0.050 0.950 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.249 1.249 27 N -0.220 5.220 28 N -0.088 5.088 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.240 0.760 37 H 0.412 0.588 38 H 0.046 0.954 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.018 0.982 48 H 0.015 0.985 49 H 0.368 0.632 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.119 -15.143 24.515 39.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.024 4.024 4 C 0.000 4.000 5 N -0.136 5.136 6 C -0.041 4.041 7 C -0.265 4.265 8 C 0.391 3.609 9 O -0.446 6.446 10 N -0.353 5.353 11 C 0.038 3.962 12 H 0.096 0.904 13 C -0.215 4.215 14 C -0.155 4.155 15 C -0.147 4.147 16 C -0.154 4.154 17 C 0.024 3.976 18 N -0.406 5.406 19 C -0.375 4.375 20 H 0.068 0.932 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.789 3.211 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.174 1.174 27 N -0.094 5.094 28 N -0.069 5.069 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.166 0.834 36 H 0.256 0.744 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.036 0.964 48 H 0.033 0.967 49 H 0.201 0.799 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -27.300 -15.368 23.835 39.364 hybrid contribution 0.253 0.718 -0.230 0.795 sum -27.047 -14.649 23.605 38.773 Atomic orbital electron populations 1.22981 0.78586 1.04354 1.01007 1.87757 1.22018 1.26609 1.95692 1.22550 0.92195 0.85678 1.02018 1.22037 0.92838 0.76435 1.08700 1.50473 1.29834 1.13952 1.19316 1.23912 0.90625 0.93886 0.95684 1.21584 1.08274 0.96814 0.99830 1.16856 0.79955 0.81435 0.82664 1.90784 1.50112 1.76910 1.26783 1.45945 1.45270 1.12500 1.31587 1.21103 0.91772 0.90240 0.93037 0.90446 1.22121 1.01411 1.00456 0.97516 1.21861 1.00468 0.97365 0.95780 1.21442 0.99572 0.97580 0.96092 1.21661 0.99263 0.98707 0.95732 1.20844 0.95268 0.91639 0.89884 1.42741 1.62180 1.06213 1.29461 1.19074 1.22634 0.93907 1.01871 0.93153 1.25611 1.00071 1.03175 0.96879 1.69904 1.41423 1.35004 1.17174 0.85301 0.79254 0.79541 0.77036 1.20074 1.22006 1.17364 1.74635 1.04373 1.19878 1.10500 1.81966 1.20853 0.91261 1.12770 0.87773 0.92937 0.93359 0.92000 0.92421 0.86576 0.83409 0.74375 0.75168 0.93491 0.89966 0.91560 0.88622 0.90042 0.92434 0.92181 0.91417 0.91126 0.96359 0.96669 0.79897 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -3.93 10.70 -148.98 -1.59 -5.53 16 3 C 0.05 0.44 6.14 71.98 0.44 0.88 16 4 C 0.12 0.75 6.91 86.38 0.60 1.35 16 5 N -0.35 -4.58 3.69 -347.09 -1.28 -5.86 16 6 C 0.12 1.54 11.27 83.85 0.95 2.49 16 7 C -0.13 -2.50 6.99 40.82 0.29 -2.22 16 8 C 0.61 13.48 7.78 86.69 0.67 14.15 16 9 O -0.57 -15.01 16.53 -3.98 -0.07 -15.07 16 10 N -0.70 -13.61 4.53 -445.73 -2.02 -15.63 16 11 C 0.14 2.51 2.57 44.99 0.12 2.62 16 12 H 0.08 1.62 7.58 -2.38 -0.02 1.60 16 13 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 14 C -0.12 -1.92 4.75 30.59 0.15 -1.78 16 15 C -0.11 -2.46 5.10 30.60 0.16 -2.30 16 16 C -0.12 -3.28 5.33 30.60 0.16 -3.12 16 17 C 0.15 5.99 6.26 86.38 0.54 6.53 16 18 N -0.76 -37.38 5.41 -343.46 -1.86 -39.24 16 19 C -0.24 -14.69 10.47 84.03 0.88 -13.81 16 20 H 0.05 3.34 8.06 -2.90 -0.02 3.31 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 22 N -0.98 -64.92 13.97 21.65 0.30 -64.61 16 23 Si 0.96 46.34 27.74 68.60 1.90 48.24 16 24 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 27 N -0.22 -5.00 12.04 -49.99 -0.60 -5.60 16 28 N -0.09 -1.83 13.65 37.02 0.51 -1.32 16 29 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.15 0.01 8.08 -2.39 -0.02 -0.01 16 36 H 0.24 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.41 7.48 8.29 -92.71 -0.77 6.71 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.38 7.75 -2.39 -0.02 1.36 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.37 16.85 5.53 -92.70 -0.51 16.33 16 50 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -81.50 420.49 2.23 -79.27 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.40 Total: 24.37 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 7.34 Total: 0.99 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -4.95 Total: -132.27 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.66 Total: -20.60 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.90 Total: 48.24 kcal Total: -81.50 2.23 -79.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170720995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.200 kcal (2) G-P(sol) polarization free energy of solvation -81.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds