Wall clock time and date at job start Sat Apr 11 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00123 * 2 1 4 4 C 1.53008 * 109.47396 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47440 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59600 * 125.27398 * 5 4 3 7 7 C 1.36593 * 106.84167 * 180.10751 * 6 5 4 8 8 C 1.47527 * 125.77299 * 179.89751 * 7 6 5 9 9 O 1.21591 * 119.99955 * 359.71895 * 8 7 6 10 10 N 1.34769 * 119.99746 * 179.71649 * 8 7 6 11 11 C 1.46505 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 15 15 C 1.53004 * 109.47236 * 64.99775 * 14 11 10 16 16 C 1.52997 * 109.47236 * 180.02562 * 15 14 11 17 17 C 1.53003 * 109.46915 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.46780 * 180.02562 * 17 16 15 19 19 C 1.36941 * 119.99738 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99895 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99837 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00330 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47272 * 59.99656 * 23 21 19 25 25 H 1.48504 * 109.46969 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47094 * 299.99549 * 23 21 19 27 27 N 1.34401 * 108.45564 * 359.63258 * 7 6 5 28 28 N 1.28761 * 109.52359 * 0.23061 * 27 7 6 29 29 H 1.09005 * 109.46851 * 60.00223 * 1 2 3 30 30 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47462 * 300.00247 * 1 2 3 32 32 H 1.09005 * 109.47266 * 60.00015 * 3 2 1 33 33 H 1.08996 * 109.47577 * 299.99867 * 3 2 1 34 34 H 1.08997 * 109.46805 * 59.99571 * 4 3 2 35 35 H 1.09005 * 109.46680 * 300.00366 * 4 3 2 36 36 H 1.08004 * 126.58100 * 359.96743 * 6 5 4 37 37 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.47075 * 59.99363 * 13 11 10 39 39 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 41 41 H 1.09001 * 109.47630 * 184.99905 * 14 11 10 42 42 H 1.09004 * 109.47346 * 305.00035 * 14 11 10 43 43 H 1.09001 * 109.46917 * 300.00567 * 15 14 11 44 44 H 1.09004 * 109.46741 * 59.99889 * 15 14 11 45 45 H 1.08993 * 109.47322 * 300.00158 * 16 15 14 46 46 H 1.09004 * 109.46881 * 60.00519 * 16 15 14 47 47 H 1.08993 * 109.47422 * 300.00302 * 17 16 15 48 48 H 1.09004 * 109.46754 * 60.00646 * 17 16 15 49 49 H 0.96997 * 120.00419 * 0.02562 * 18 17 16 50 50 H 0.97001 * 120.00306 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0289 3.0027 0.8854 7 6 5.3066 4.2864 0.5104 8 6 6.2392 5.2021 1.1945 9 8 6.8355 4.8324 2.1876 10 7 6.4304 6.4485 0.7187 11 6 7.3570 7.3576 1.3978 12 1 7.3154 7.1825 2.4728 13 6 8.7797 7.1054 0.8946 14 6 6.9604 8.8052 1.1012 15 6 5.5883 9.0939 1.7137 16 6 5.1914 10.5413 1.4165 17 6 3.8190 10.8296 2.0285 18 7 3.4387 12.2155 1.7434 19 6 2.2418 12.7038 2.1953 20 1 1.5780 12.0671 2.7615 21 6 1.8812 14.0166 1.9248 22 7 2.6899 14.7923 1.2344 23 14 0.2488 14.6829 2.5419 24 1 0.2077 14.5976 4.0238 25 1 0.1029 16.1004 2.1238 26 1 -0.8617 13.8806 1.9690 27 7 4.5909 4.5723 -0.5907 28 7 3.8823 3.5492 -0.9210 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6435 -0.8891 35 1 3.8567 0.6438 0.8909 36 1 5.4464 2.4742 1.7297 37 1 5.9550 6.7434 -0.0738 38 1 8.8212 7.2804 -0.1805 39 1 9.4691 7.7815 1.4001 40 1 9.0623 6.0741 1.1059 41 1 7.6998 9.4802 1.5321 42 1 6.9157 8.9561 0.0225 43 1 4.8488 8.4189 1.2828 44 1 5.6330 8.9430 2.7923 45 1 5.9307 11.2165 1.8471 46 1 5.1466 10.6916 0.3378 47 1 3.0799 10.1544 1.5976 48 1 3.8634 10.6792 3.1072 49 1 4.0347 12.7871 1.2346 50 1 2.4381 15.7098 1.0456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170720996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:37 Heat of formation + Delta-G solvation = 8.543285 kcal Electronic energy + Delta-G solvation = -28206.105343 eV Core-core repulsion = 24077.691867 eV Total energy + Delta-G solvation = -4128.413475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62425 -39.78780 -38.68321 -36.93366 -35.44081 -35.20103 -33.20775 -31.85422 -31.38536 -30.47016 -29.84248 -27.39405 -27.07352 -24.62480 -24.56068 -23.85890 -22.26545 -22.07393 -20.95447 -20.65570 -20.50656 -18.55680 -17.30324 -17.07071 -16.95036 -16.56890 -16.38409 -16.04891 -15.58510 -15.10965 -14.96442 -14.86751 -14.67128 -14.29206 -14.15815 -13.86274 -13.47212 -13.10399 -12.99906 -12.88677 -12.87046 -12.69788 -12.33443 -12.30042 -12.05020 -11.70918 -11.61437 -11.41079 -11.21231 -10.95245 -10.85882 -10.75872 -10.64593 -10.42308 -10.39692 -10.31612 -10.21325 -9.96073 -9.71806 -9.61369 -9.18161 -8.80638 -6.85080 -5.70656 -2.98785 0.69698 1.38534 1.41045 2.93612 3.02828 3.07142 3.47810 3.51433 3.53033 3.80665 3.87935 4.10991 4.32309 4.43637 4.51723 4.58525 4.64691 4.70194 4.71959 4.79220 4.91572 4.94346 5.04912 5.05368 5.09496 5.31541 5.37796 5.47052 5.51028 5.60334 5.67481 5.75905 5.83351 5.84544 5.95358 6.01437 6.16789 6.27592 6.33318 6.38036 6.42732 6.45337 6.53963 6.96675 7.00623 7.25904 7.58606 7.74778 7.98990 8.48855 9.59326 10.19237 10.53971 11.52403 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.008122 B = 0.001992 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.433483 B =14054.538454 C =17040.605129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.362 5.362 6 C 0.099 3.901 7 C -0.101 4.101 8 C 0.607 3.393 9 O -0.541 6.541 10 N -0.705 5.705 11 C 0.141 3.859 12 H 0.091 0.909 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.198 5.198 28 N -0.061 5.061 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.207 0.793 37 H 0.409 0.591 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 -32.872 -3.268 33.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.148 5.148 6 C -0.058 4.058 7 C -0.240 4.240 8 C 0.390 3.610 9 O -0.418 6.418 10 N -0.356 5.356 11 C 0.037 3.963 12 H 0.109 0.891 13 C -0.222 4.222 14 C -0.165 4.165 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 N -0.073 5.073 28 N -0.041 5.041 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.224 0.776 37 H 0.245 0.755 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.265 -32.905 -3.722 33.702 hybrid contribution -0.781 0.532 0.618 1.129 sum 5.484 -32.373 -3.104 32.980 Atomic orbital electron populations 1.22824 0.79446 1.03356 1.00702 1.87766 1.20968 1.26358 1.95660 1.22627 0.91731 0.85918 1.02633 1.21709 0.93380 0.77858 1.06646 1.50310 1.30373 1.13624 1.20515 1.23405 0.91879 0.94894 0.95601 1.21522 1.07482 0.95553 0.99413 1.16705 0.80040 0.81297 0.82909 1.90808 1.49305 1.76107 1.25543 1.45908 1.45328 1.12591 1.31755 1.21116 0.88243 0.88789 0.98139 0.89084 1.22182 0.96014 1.02377 1.01581 1.21946 0.98544 0.94061 1.01966 1.21529 0.95695 0.97293 1.00792 1.21720 0.98282 0.95158 1.01151 1.20653 0.92631 0.87707 0.96557 1.42383 1.21404 1.07977 1.66094 1.19213 0.95204 0.94905 1.27602 0.91324 1.24746 0.98669 0.96654 1.01163 1.69652 1.36906 1.07295 1.44537 0.86253 0.83635 0.77872 0.78359 1.21310 1.21684 1.21315 1.74675 1.03648 1.18858 1.10077 1.82038 1.20045 0.90468 1.11569 0.93444 0.88951 0.93560 0.92170 0.91126 0.87260 0.86645 0.77650 0.75510 0.92367 0.91370 0.92243 0.90065 0.91180 0.92020 0.92001 0.92067 0.92078 0.96616 0.96612 0.78342 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.31 10.70 -35.23 -0.38 -2.68 16 3 C 0.05 0.26 6.14 37.16 0.23 0.48 16 4 C 0.13 0.52 6.91 -4.04 -0.03 0.49 16 5 N -0.36 -2.65 3.69 -61.06 -0.23 -2.87 16 6 C 0.10 0.75 11.27 -16.84 -0.19 0.56 16 7 C -0.10 -1.05 6.99 -83.55 -0.58 -1.64 16 8 C 0.61 7.07 7.78 -12.48 -0.10 6.97 16 9 O -0.54 -7.43 16.53 5.29 0.09 -7.35 16 10 N -0.70 -7.41 4.53 -54.85 -0.25 -7.66 16 11 C 0.14 1.42 2.57 -67.93 -0.17 1.25 16 12 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 13 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 14 C -0.13 -1.31 4.75 -26.73 -0.13 -1.43 16 15 C -0.11 -1.49 5.10 -26.73 -0.14 -1.63 16 16 C -0.13 -2.07 5.33 -26.73 -0.14 -2.21 16 17 C 0.15 3.24 6.26 -4.04 -0.03 3.21 16 18 N -0.73 -19.61 5.60 -59.90 -0.34 -19.95 16 19 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 22 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 23 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 N -0.20 -2.30 12.04 32.85 0.40 -1.91 16 28 N -0.06 -0.64 13.65 60.35 0.82 0.18 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 0.20 8.08 -51.93 -0.42 -0.22 16 36 H 0.21 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.41 4.06 8.29 -40.82 -0.34 3.72 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.64 7.67 -40.82 -0.31 10.32 16 50 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 423.60 15.07 6.38 6.38 Total: -1.00 -35.97 423.60 -6.45 -42.42 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.60 Total: 5.30 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.06 Total: -1.52 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 1.13 Total: -60.56 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.29 Total: -10.03 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.97 -6.45 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170720996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.963 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds