Wall clock time and date at job start Sat Apr 11 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00123 * 2 1 4 4 C 1.53008 * 109.47396 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47440 * 180.02562 * 4 3 2 6 6 C 1.34810 * 126.59600 * 125.27398 * 5 4 3 7 7 C 1.36593 * 106.84167 * 180.10751 * 6 5 4 8 8 C 1.47527 * 125.77299 * 179.89751 * 7 6 5 9 9 O 1.21591 * 119.99955 * 359.71895 * 8 7 6 10 10 N 1.34769 * 119.99746 * 179.71649 * 8 7 6 11 11 C 1.46505 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 15 15 C 1.53004 * 109.47236 * 64.99775 * 14 11 10 16 16 C 1.52997 * 109.47236 * 180.02562 * 15 14 11 17 17 C 1.53003 * 109.46915 * 179.97438 * 16 15 14 18 18 N 1.46507 * 109.46780 * 180.02562 * 17 16 15 19 19 C 1.36941 * 119.99738 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99895 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99837 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00330 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47272 * 59.99656 * 23 21 19 25 25 H 1.48504 * 109.46969 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47094 * 299.99549 * 23 21 19 27 27 N 1.34401 * 108.45564 * 359.63258 * 7 6 5 28 28 N 1.28761 * 109.52359 * 0.23061 * 27 7 6 29 29 H 1.09005 * 109.46851 * 60.00223 * 1 2 3 30 30 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47462 * 300.00247 * 1 2 3 32 32 H 1.09005 * 109.47266 * 60.00015 * 3 2 1 33 33 H 1.08996 * 109.47577 * 299.99867 * 3 2 1 34 34 H 1.08997 * 109.46805 * 59.99571 * 4 3 2 35 35 H 1.09005 * 109.46680 * 300.00366 * 4 3 2 36 36 H 1.08004 * 126.58100 * 359.96743 * 6 5 4 37 37 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.47075 * 59.99363 * 13 11 10 39 39 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 41 41 H 1.09001 * 109.47630 * 184.99905 * 14 11 10 42 42 H 1.09004 * 109.47346 * 305.00035 * 14 11 10 43 43 H 1.09001 * 109.46917 * 300.00567 * 15 14 11 44 44 H 1.09004 * 109.46741 * 59.99889 * 15 14 11 45 45 H 1.08993 * 109.47322 * 300.00158 * 16 15 14 46 46 H 1.09004 * 109.46881 * 60.00519 * 16 15 14 47 47 H 1.08993 * 109.47422 * 300.00302 * 17 16 15 48 48 H 1.09004 * 109.46754 * 60.00646 * 17 16 15 49 49 H 0.96997 * 120.00419 * 0.02562 * 18 17 16 50 50 H 0.97001 * 120.00306 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0289 3.0027 0.8854 7 6 5.3066 4.2864 0.5104 8 6 6.2392 5.2021 1.1945 9 8 6.8355 4.8324 2.1876 10 7 6.4304 6.4485 0.7187 11 6 7.3570 7.3576 1.3978 12 1 7.3154 7.1825 2.4728 13 6 8.7797 7.1054 0.8946 14 6 6.9604 8.8052 1.1012 15 6 5.5883 9.0939 1.7137 16 6 5.1914 10.5413 1.4165 17 6 3.8190 10.8296 2.0285 18 7 3.4387 12.2155 1.7434 19 6 2.2418 12.7038 2.1953 20 1 1.5780 12.0671 2.7615 21 6 1.8812 14.0166 1.9248 22 7 2.6899 14.7923 1.2344 23 14 0.2488 14.6829 2.5419 24 1 0.2077 14.5976 4.0238 25 1 0.1029 16.1004 2.1238 26 1 -0.8617 13.8806 1.9690 27 7 4.5909 4.5723 -0.5907 28 7 3.8823 3.5492 -0.9210 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6435 -0.8891 35 1 3.8567 0.6438 0.8909 36 1 5.4464 2.4742 1.7297 37 1 5.9550 6.7434 -0.0738 38 1 8.8212 7.2804 -0.1805 39 1 9.4691 7.7815 1.4001 40 1 9.0623 6.0741 1.1059 41 1 7.6998 9.4802 1.5321 42 1 6.9157 8.9561 0.0225 43 1 4.8488 8.4189 1.2828 44 1 5.6330 8.9430 2.7923 45 1 5.9307 11.2165 1.8471 46 1 5.1466 10.6916 0.3378 47 1 3.0799 10.1544 1.5976 48 1 3.8634 10.6792 3.1072 49 1 4.0347 12.7871 1.2346 50 1 2.4381 15.7098 1.0456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170720996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:36 Heat of formation + Delta-G solvation = -17.821430 kcal Electronic energy + Delta-G solvation = -28207.248602 eV Core-core repulsion = 24077.691867 eV Total energy + Delta-G solvation = -4129.556735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.30646 -40.65131 -39.09051 -38.01870 -36.81731 -35.99562 -34.75904 -33.06487 -32.28306 -31.68114 -30.57948 -28.80279 -27.44173 -25.98783 -25.14663 -25.00127 -23.56291 -22.84845 -22.05917 -21.81555 -21.35077 -19.23288 -19.10183 -17.83090 -17.54171 -17.43495 -16.92213 -16.70740 -16.60516 -16.27295 -16.11441 -15.70282 -15.55611 -15.41257 -15.26659 -15.08271 -14.62849 -14.50965 -14.15318 -14.01315 -13.49920 -13.26438 -13.21632 -13.01549 -12.87010 -12.83637 -12.80998 -12.45916 -12.42878 -12.27845 -12.20140 -12.17740 -11.87974 -11.79988 -11.49488 -11.44943 -11.38277 -11.18229 -10.93671 -10.82178 -10.46044 -10.02466 -9.02077 -7.96674 -5.26225 0.07652 0.58485 0.89618 1.45427 1.49392 1.55666 2.14747 2.23444 2.54913 2.63868 3.15955 3.35993 3.43551 3.61233 3.73593 3.78129 3.92068 4.05271 4.07139 4.07694 4.15455 4.17078 4.37469 4.41600 4.43467 4.45806 4.53420 4.57684 4.62617 4.66482 4.75567 4.81378 4.82682 4.88656 4.96407 5.00921 5.02750 5.13660 5.28267 5.32418 5.35990 5.44362 5.45159 5.53542 5.58526 5.95726 6.25860 6.43214 6.85175 7.14416 7.31389 8.08035 8.32091 9.26642 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.008122 B = 0.001992 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.433483 B =14054.538454 C =17040.605129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.350 5.350 6 C 0.117 3.883 7 C -0.125 4.125 8 C 0.606 3.394 9 O -0.567 6.567 10 N -0.703 5.703 11 C 0.144 3.856 12 H 0.079 0.921 13 C -0.157 4.157 14 C -0.118 4.118 15 C -0.105 4.105 16 C -0.112 4.112 17 C 0.148 3.852 18 N -0.748 5.748 19 C -0.252 4.252 20 H 0.072 0.928 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.977 3.023 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.278 1.278 27 N -0.221 5.221 28 N -0.088 5.088 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.121 0.879 35 H 0.148 0.852 36 H 0.241 0.759 37 H 0.412 0.588 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.013 0.987 48 H 0.015 0.985 49 H 0.374 0.626 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.753 -34.488 -2.715 35.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.027 4.027 4 C 0.002 3.998 5 N -0.136 5.136 6 C -0.040 4.040 7 C -0.265 4.265 8 C 0.391 3.609 9 O -0.445 6.445 10 N -0.353 5.353 11 C 0.040 3.960 12 H 0.097 0.903 13 C -0.215 4.215 14 C -0.156 4.156 15 C -0.143 4.143 16 C -0.150 4.150 17 C 0.022 3.978 18 N -0.391 5.391 19 C -0.384 4.384 20 H 0.090 0.910 21 C -0.270 4.270 22 N -0.619 5.619 23 Si 0.805 3.195 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.204 1.204 27 N -0.095 5.095 28 N -0.068 5.068 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.166 0.834 36 H 0.257 0.743 37 H 0.248 0.752 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.206 0.794 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.310 -34.564 -3.185 35.279 hybrid contribution -0.831 0.923 0.463 1.325 sum 5.480 -33.641 -2.721 34.193 Atomic orbital electron populations 1.22979 0.78666 1.04384 1.00922 1.87742 1.21914 1.26513 1.95682 1.22569 0.92529 0.85694 1.01893 1.22031 0.92508 0.76414 1.08850 1.50481 1.29741 1.13937 1.19441 1.23908 0.90644 0.93925 0.95555 1.21572 1.08253 0.96711 0.99943 1.16862 0.79882 0.81567 0.82594 1.90784 1.50465 1.76645 1.26652 1.45948 1.45206 1.12470 1.31679 1.21084 0.88965 0.88458 0.97494 0.90308 1.22123 0.95223 1.02027 1.02148 1.21861 0.96966 0.94377 1.02350 1.21424 0.97298 0.94650 1.00970 1.21597 0.95417 0.97423 1.00568 1.20852 0.95198 0.85015 0.96754 1.42618 1.20721 1.09855 1.65926 1.19623 0.96164 0.95333 1.27295 0.90958 1.25635 1.02461 0.97029 1.01826 1.69812 1.38788 1.07376 1.45933 0.85160 0.79328 0.76872 0.78091 1.20301 1.21778 1.20367 1.74641 1.04263 1.19725 1.10822 1.81965 1.20704 0.91235 1.12932 0.93376 0.87587 0.93228 0.92447 0.92430 0.86111 0.83424 0.74322 0.75205 0.91637 0.90029 0.93318 0.88894 0.90284 0.92313 0.92106 0.92030 0.92184 0.96877 0.96691 0.79391 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.24 10.70 -148.98 -1.59 -5.83 16 3 C 0.05 0.48 6.14 71.98 0.44 0.93 16 4 C 0.12 0.75 6.91 86.38 0.60 1.35 16 5 N -0.35 -4.60 3.69 -347.09 -1.28 -5.88 16 6 C 0.12 1.56 11.27 83.85 0.95 2.51 16 7 C -0.13 -2.54 6.99 40.82 0.29 -2.26 16 8 C 0.61 13.84 7.78 86.69 0.67 14.51 16 9 O -0.57 -15.24 16.53 -4.00 -0.07 -15.30 16 10 N -0.70 -14.37 4.53 -445.71 -2.02 -16.39 16 11 C 0.14 2.74 2.57 44.99 0.12 2.86 16 12 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 13 C -0.16 -2.57 9.48 71.98 0.68 -1.88 16 14 C -0.12 -2.22 4.75 30.59 0.15 -2.08 16 15 C -0.11 -2.62 5.10 30.59 0.16 -2.46 16 16 C -0.11 -3.63 5.33 30.59 0.16 -3.46 16 17 C 0.15 6.30 6.26 86.38 0.54 6.84 16 18 N -0.75 -40.31 5.60 -343.43 -1.92 -42.24 16 19 C -0.25 -14.82 9.99 84.03 0.84 -13.98 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 22 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 23 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 N -0.22 -5.11 12.04 -49.99 -0.60 -5.71 16 28 N -0.09 -1.84 13.65 37.02 0.51 -1.34 16 29 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.15 0.00 8.08 -2.38 -0.02 -0.02 16 36 H 0.24 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.41 8.01 8.29 -92.71 -0.77 7.24 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.50 7.75 -2.39 -0.02 1.49 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.37 21.11 7.67 -92.71 -0.71 20.40 16 50 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.57 423.60 2.09 -75.48 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.54 Total: 28.21 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 7.30 Total: 0.17 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -5.04 Total: -132.06 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -1.66 Total: -21.13 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -77.57 2.09 -75.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170720996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.656 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds