Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00309 * 13 11 9 15 15 H 1.48494 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47298 * 300.00594 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 O 1.42899 * 109.46887 * 179.97438 * 20 18 17 22 22 C 1.42904 * 113.99873 * 179.97438 * 21 20 18 23 23 C 1.50707 * 109.46806 * 180.02562 * 22 21 20 24 24 N 1.30520 * 126.34536 * 90.02585 * 23 22 21 25 25 N 1.28593 * 109.67190 * 179.97438 * 24 23 22 26 26 C 1.30524 * 109.67414 * 359.97438 * 25 24 23 27 27 N 1.35491 * 126.34212 * 269.71093 * 23 22 21 28 28 C 1.46494 * 126.98547 * 0.04242 * 27 23 22 29 29 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 30 30 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 32 32 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 33 33 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 43 43 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 44 44 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 45 45 H 1.08998 * 109.47243 * 300.00123 * 22 21 20 46 46 H 1.08994 * 109.46929 * 60.00606 * 22 21 20 47 47 H 1.08003 * 126.34807 * 179.97438 * 26 25 24 48 48 H 1.09002 * 109.47451 * 89.99709 * 28 27 23 49 49 H 1.09002 * 109.47328 * 210.00034 * 28 27 23 50 50 H 1.08996 * 109.46989 * 329.99752 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.2348 -1.2697 5.7470 15 1 9.9550 -3.4093 6.8541 16 1 10.4352 -3.3270 4.4788 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 8 2.6975 0.1892 -4.6814 22 6 3.1642 -0.3865 -5.9033 23 6 3.1739 0.6653 -6.9826 24 7 4.1661 1.4595 -7.2799 25 7 3.8277 2.2296 -8.2525 26 6 2.6044 1.9614 -8.6203 27 7 2.1562 0.9577 -7.8280 28 6 0.8380 0.3202 -7.8742 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.7516 -1.7713 1.2058 33 1 1.6053 -0.2615 2.1370 34 1 3.8530 0.4372 1.3574 35 1 3.9994 -1.0727 0.4262 36 1 3.6401 -0.8755 3.4507 37 1 3.7865 -2.3850 2.5188 38 1 6.0345 -1.6850 1.7398 39 1 5.8874 -0.1758 2.6719 40 1 5.4606 -2.3487 4.4245 41 1 7.3646 -3.6493 6.8350 42 1 2.2492 -1.6318 -1.1524 43 1 3.6494 -1.1205 -3.3977 44 1 1.9780 -1.5510 -3.8323 45 1 4.1744 -0.7704 -5.7615 46 1 2.5032 -1.2021 -6.1963 47 1 2.0527 2.4472 -9.4116 48 1 0.1530 0.8540 -7.2154 49 1 0.4564 0.3482 -8.8948 50 1 0.9238 -0.7158 -7.5467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175960207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -28.656147 kcal Electronic energy + Delta-G solvation = -28142.786497 eV Core-core repulsion = 24012.759933 eV Total energy + Delta-G solvation = -4130.026564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.15478 -40.97503 -38.93845 -37.89233 -36.78316 -36.03027 -34.77506 -33.16098 -32.67567 -31.78340 -29.25106 -28.80342 -28.45776 -27.11702 -25.90241 -23.76306 -23.42625 -22.23189 -22.04420 -21.94925 -21.49727 -19.12426 -18.62284 -18.16613 -17.85490 -17.39871 -17.28689 -16.72223 -16.68264 -16.26498 -16.07566 -15.93886 -15.45601 -15.34865 -15.19197 -14.74475 -14.51757 -14.31302 -14.18752 -14.04771 -13.67608 -13.33315 -13.12031 -13.04706 -12.97561 -12.87189 -12.83596 -12.59572 -12.44031 -12.26245 -12.19547 -11.87829 -11.80581 -11.47861 -11.45372 -11.38933 -11.16239 -10.92973 -10.88091 -10.85018 -10.45487 -10.07646 -9.01158 -7.96472 -5.25648 0.61500 1.46734 1.49942 1.50615 1.56263 1.60738 1.68949 2.01575 2.55486 2.90417 3.36680 3.44637 3.59968 3.66761 3.81088 3.84690 3.93016 4.04290 4.07215 4.14653 4.18221 4.24257 4.32254 4.37080 4.39717 4.43577 4.57890 4.61702 4.66041 4.68760 4.79684 4.86545 4.88860 4.93963 5.00365 5.03453 5.07990 5.13466 5.28104 5.33063 5.45410 5.46234 5.54204 5.58893 5.83516 5.92171 6.26412 6.59646 7.28303 7.32267 7.63739 8.09064 8.32606 9.26763 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.012969 B = 0.001617 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.548636 B =17309.461574 C =19031.236724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.060 0.940 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.748 5.748 9 C -0.253 4.253 10 H 0.072 0.928 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.277 1.277 17 N -0.707 5.707 18 C 0.508 3.492 19 O -0.580 6.580 20 C 0.045 3.955 21 O -0.394 6.394 22 C 0.150 3.850 23 C 0.164 3.836 24 N -0.329 5.329 25 N -0.354 5.354 26 C 0.168 3.832 27 N -0.465 5.465 28 C 0.062 3.938 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.009 0.991 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.418 0.582 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.117 0.883 47 H 0.265 0.735 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.558 0.057 -30.547 37.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.020 3.980 8 N -0.391 5.391 9 C -0.385 4.385 10 H 0.090 0.910 11 C -0.266 4.266 12 N -0.618 5.618 13 Si 0.803 3.197 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.203 1.203 17 N -0.361 5.361 18 C 0.295 3.705 19 O -0.459 6.459 20 C -0.034 4.034 21 O -0.312 6.312 22 C 0.072 3.928 23 C -0.105 4.105 24 N -0.171 5.171 25 N -0.193 5.193 26 C -0.121 4.121 27 N -0.155 5.155 28 C -0.079 4.079 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.146 0.854 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.281 0.719 48 H 0.105 0.895 49 H 0.143 0.857 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.327 1.755 -30.551 37.300 hybrid contribution -0.050 -0.918 0.704 1.158 sum -21.377 0.836 -29.847 36.722 Atomic orbital electron populations 1.22104 0.94217 1.03074 1.02022 1.20934 0.94537 0.96511 0.84035 0.92149 1.21836 0.94554 1.02212 0.96679 1.21438 0.95955 0.99945 0.97090 1.21597 0.93578 1.01087 0.98689 1.20869 0.94410 0.94134 0.88537 1.42606 1.04468 1.65366 1.26661 1.19630 0.85410 1.27943 1.05542 0.90975 1.25583 1.02205 1.01129 0.97726 1.69801 1.34730 1.41798 1.15516 0.85196 0.79871 0.77598 0.76995 1.20583 1.21781 1.20257 1.45887 1.66812 1.14850 1.08587 1.20846 0.77228 0.86933 0.85507 1.90731 1.51217 1.18328 1.85604 1.22450 1.04513 0.92107 0.84318 1.88023 1.87364 1.37528 1.18330 1.20766 1.02870 0.89709 0.79482 1.24791 0.86126 1.02081 0.97493 1.74157 1.26127 1.05826 1.10977 1.74170 1.13324 1.21507 1.10306 1.27342 0.93731 0.91256 0.99757 1.46475 1.15183 1.28217 1.25668 1.22576 0.78380 0.99881 1.07023 0.94033 0.90566 0.90841 0.89179 0.89782 0.93138 0.91188 0.92613 0.91498 0.96258 0.97259 0.79376 0.93881 0.74446 0.87284 0.85445 0.88528 0.86552 0.71940 0.89467 0.85678 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 71.98 0.68 -1.61 16 2 C 0.14 2.46 2.57 44.99 0.12 2.57 16 3 H 0.06 1.41 7.58 -2.38 -0.02 1.40 16 4 C -0.12 -1.83 4.75 30.59 0.15 -1.69 16 5 C -0.11 -2.35 5.10 30.60 0.16 -2.19 16 6 C -0.11 -3.33 5.33 30.60 0.16 -3.16 16 7 C 0.15 5.95 6.26 86.38 0.54 6.50 16 8 N -0.75 -39.09 5.60 -343.47 -1.92 -41.02 16 9 C -0.25 -14.59 9.99 84.03 0.84 -13.76 16 10 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 11 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 12 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 13 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 N -0.71 -9.90 4.53 -442.54 -2.00 -11.91 16 18 C 0.51 9.84 7.87 87.66 0.69 10.53 16 19 O -0.58 -18.15 16.16 16.00 0.26 -17.89 16 20 C 0.04 0.49 6.42 71.24 0.46 0.95 16 21 O -0.39 -7.24 9.86 -129.94 -1.28 -8.52 16 22 C 0.15 1.75 6.29 71.24 0.45 2.19 16 23 C 0.16 3.11 7.66 137.98 1.06 4.16 16 24 N -0.33 -9.18 12.21 -50.15 -0.61 -9.79 16 25 N -0.35 -9.08 12.21 -59.98 -0.73 -9.81 16 26 C 0.17 2.38 12.74 180.11 2.30 4.67 16 27 N -0.47 -5.56 3.15 -542.07 -1.71 -7.26 16 28 C 0.06 0.04 11.04 127.77 1.41 1.45 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.42 7.75 -2.39 -0.02 1.40 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.37 20.47 7.67 -92.71 -0.71 19.76 16 41 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.42 3.05 8.60 -92.71 -0.80 2.25 16 43 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.12 0.22 7.21 -2.39 -0.02 0.20 16 47 H 0.26 0.75 8.06 -2.91 -0.02 0.73 16 48 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.12 -0.67 8.14 -2.39 -0.02 -0.69 16 50 H 0.11 -0.36 7.19 -2.39 -0.02 -0.37 16 Total: -1.00 -94.93 421.01 3.21 -91.72 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.57 Total: 18.38 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 9.47 Total: 6.77 kcal Atomic # 7 Polarization: -132.45 SS G_CDS: -6.70 Total: -139.14 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.02 Total: -26.41 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -94.93 3.21 -91.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175960207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.068 kcal (2) G-P(sol) polarization free energy of solvation -94.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds