Wall clock time and date at job start Sat Apr 11 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47095 * 2 1 4 4 C 1.52995 * 109.47134 * 120.00343 * 2 1 3 5 5 C 1.53003 * 109.47010 * 184.99974 * 4 2 1 6 6 C 1.52996 * 109.47362 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47362 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47035 * 180.02562 * 7 6 5 9 9 C 1.36938 * 119.99443 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00216 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99377 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00429 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99538 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47039 * 90.00226 * 13 11 9 15 15 H 1.48503 * 109.46905 * 209.99917 * 13 11 9 16 16 H 1.48493 * 109.47399 * 330.00134 * 13 11 9 17 17 N 1.46505 * 109.46690 * 240.00568 * 2 1 3 18 18 C 1.34768 * 120.00145 * 85.00075 * 17 2 1 19 19 O 1.21284 * 120.00403 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00149 * 179.97438 * 18 17 2 21 21 O 1.42898 * 109.47395 * 180.02562 * 20 18 17 22 22 C 1.42897 * 114.00081 * 180.02562 * 21 20 18 23 23 C 1.50699 * 109.47189 * 179.97438 * 22 21 20 24 24 N 1.30832 * 125.96108 * 90.02117 * 23 22 21 25 25 C 1.33244 * 109.83031 * 179.97438 * 24 23 22 26 26 N 1.30715 * 108.94545 * 359.97438 * 25 24 23 27 27 N 1.34430 * 125.96160 * 269.99803 * 23 22 21 28 28 C 1.46499 * 126.82518 * 0.02562 * 27 23 22 29 29 H 1.08995 * 109.47444 * 60.00000 * 1 2 3 30 30 H 1.09003 * 109.46804 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47005 * 299.99422 * 1 2 3 32 32 H 1.08993 * 109.47539 * 304.99794 * 4 2 1 33 33 H 1.09000 * 109.47515 * 65.00281 * 4 2 1 34 34 H 1.09004 * 109.47287 * 300.00285 * 5 4 2 35 35 H 1.09007 * 109.47125 * 59.99817 * 5 4 2 36 36 H 1.08995 * 109.47373 * 300.00534 * 6 5 4 37 37 H 1.09007 * 109.47047 * 59.99895 * 6 5 4 38 38 H 1.09003 * 109.46798 * 300.00224 * 7 6 5 39 39 H 1.09000 * 109.46731 * 59.99953 * 7 6 5 40 40 H 0.96994 * 120.00151 * 0.02562 * 8 7 6 41 41 H 0.96993 * 120.00132 * 179.97438 * 12 11 9 42 42 H 0.97003 * 119.99343 * 264.99145 * 17 2 1 43 43 H 1.09001 * 109.46932 * 60.00154 * 20 18 17 44 44 H 1.08995 * 109.47354 * 300.00129 * 20 18 17 45 45 H 1.09000 * 109.47549 * 60.00009 * 22 21 20 46 46 H 1.09002 * 109.47070 * 299.99263 * 22 21 20 47 47 H 1.08005 * 125.52896 * 179.74108 * 25 24 23 48 48 H 1.09002 * 109.46976 * 90.00079 * 28 27 23 49 49 H 1.08997 * 109.47563 * 210.00558 * 28 27 23 50 50 H 1.09004 * 109.46586 * 330.00311 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0749 -1.3341 2.5630 7 6 5.5998 -1.2266 2.6271 8 7 6.0882 -1.9173 3.8233 9 6 7.4303 -1.9536 4.0928 10 1 8.1286 -1.4735 3.4235 11 6 7.8929 -2.6076 5.2265 12 7 7.0417 -3.1923 6.0425 13 14 9.7237 -2.6578 5.5939 14 1 10.0945 -1.4831 6.4233 15 1 10.0467 -3.9059 6.3310 16 1 10.4855 -2.6243 4.3197 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8582 1.1585 -2.4117 20 6 2.6497 -0.7283 -3.5876 21 8 2.6983 0.1901 -4.6813 22 6 3.1637 -0.3857 -5.9035 23 6 3.1735 0.6662 -6.9826 24 7 4.1733 1.4580 -7.2747 25 6 3.8340 2.2617 -8.2818 26 7 2.6084 1.9909 -8.6466 27 7 2.1567 0.9544 -7.8133 28 6 0.8394 0.3142 -7.8439 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6055 -0.2619 2.1369 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0728 0.4258 35 1 3.8533 0.4370 1.3573 36 1 3.6403 -0.8743 3.4506 37 1 3.7865 -2.3844 2.5198 38 1 6.0340 -1.6868 1.7395 39 1 5.8885 -0.1764 2.6702 40 1 5.4609 -2.3489 4.4242 41 1 7.3651 -3.6496 6.8344 42 1 2.2490 -1.6317 -1.1527 43 1 1.9775 -1.5505 -3.8327 44 1 3.6490 -1.1202 -3.3981 45 1 2.5016 -1.2003 -6.1968 46 1 4.1735 -0.7710 -5.7622 47 1 4.4676 3.0172 -8.7227 48 1 0.1602 0.8486 -7.1796 49 1 0.4471 0.3383 -8.8606 50 1 0.9307 -0.7208 -7.5142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175960391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:54 Heat of formation + Delta-G solvation = -18.232983 kcal Electronic energy + Delta-G solvation = -28121.287036 eV Core-core repulsion = 23991.712455 eV Total energy + Delta-G solvation = -4129.574581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.17885 -40.95577 -38.91806 -37.87737 -36.77136 -35.10530 -34.76443 -33.23899 -32.92960 -31.81033 -29.52759 -28.80072 -28.26289 -27.07025 -25.89610 -23.75335 -23.11157 -22.20631 -21.96818 -21.71750 -21.45403 -19.11874 -18.58858 -18.13179 -17.86632 -17.24140 -17.18527 -16.67806 -16.57270 -16.16612 -15.98256 -15.68767 -15.44383 -15.34378 -15.23106 -14.59532 -14.50581 -14.23379 -14.12215 -14.09595 -13.98454 -13.33569 -13.23574 -13.04950 -12.98196 -12.88312 -12.83268 -12.59736 -12.43892 -12.25215 -12.14452 -11.87242 -11.79354 -11.46755 -11.37757 -11.17280 -10.95530 -10.93160 -10.86420 -10.79081 -10.66281 -10.06090 -9.00435 -7.96097 -5.25096 0.35060 1.29120 1.47330 1.49254 1.57806 1.62506 1.65176 2.04677 2.55895 2.81685 3.36014 3.37325 3.50558 3.60869 3.72405 3.86507 4.05195 4.07913 4.08500 4.16349 4.25791 4.26898 4.34629 4.37557 4.38826 4.44901 4.56120 4.62231 4.62785 4.67112 4.80834 4.89996 4.95086 5.01362 5.04655 5.14708 5.19667 5.29207 5.34098 5.35266 5.46660 5.47304 5.55402 5.60119 5.69907 5.88314 6.27003 6.61554 6.97965 7.30348 7.32819 8.09797 8.33090 9.27412 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.001617 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.243821 B =17311.631606 C =19035.628122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.061 0.939 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.251 4.251 10 H 0.073 0.927 11 C -0.075 4.075 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.270 1.270 17 N -0.707 5.707 18 C 0.508 3.492 19 O -0.580 6.580 20 C 0.045 3.955 21 O -0.393 6.393 22 C 0.141 3.859 23 C 0.267 3.733 24 N -0.562 5.562 25 C 0.191 3.809 26 N -0.344 5.344 27 N -0.370 5.370 28 C 0.083 3.917 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.010 0.990 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.418 0.582 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.121 0.879 46 H 0.105 0.895 47 H 0.245 0.755 48 H 0.084 0.916 49 H 0.104 0.896 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.130 0.520 -28.788 34.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.383 4.383 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.215 1.215 15 H -0.218 1.218 16 H -0.194 1.194 17 N -0.361 5.361 18 C 0.294 3.706 19 O -0.459 6.459 20 C -0.033 4.033 21 O -0.311 6.311 22 C 0.063 3.937 23 C -0.010 4.010 24 N -0.292 5.292 25 C -0.111 4.111 26 N -0.173 5.173 27 N -0.162 5.162 28 C -0.057 4.057 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.028 0.972 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.256 0.744 43 H 0.147 0.853 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.123 0.877 47 H 0.261 0.739 48 H 0.103 0.897 49 H 0.122 0.878 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.389 1.905 -29.264 34.614 hybrid contribution 0.975 -0.426 0.802 1.333 sum -17.413 1.478 -28.462 33.399 Atomic orbital electron populations 1.22107 0.94320 1.03053 1.01989 1.20925 0.94459 0.96533 0.84060 0.92106 1.21835 0.94612 1.02193 0.96663 1.21437 0.95892 0.99967 0.97088 1.21598 0.93608 1.01084 0.98698 1.20875 0.94378 0.94149 0.88540 1.42621 1.04475 1.65355 1.26678 1.19668 0.85405 1.27770 1.05476 0.90896 1.25588 1.02184 1.01183 0.97780 1.69808 1.34662 1.41907 1.15527 0.85125 0.79934 0.76703 0.77907 1.21458 1.21840 1.19445 1.45884 1.66815 1.14859 1.08582 1.20862 0.77230 0.86939 0.85522 1.90736 1.51222 1.18369 1.85602 1.22470 1.04706 0.92031 0.84143 1.88015 1.87450 1.37405 1.18214 1.20961 1.03577 0.89596 0.79567 1.24344 0.84476 0.97725 0.94441 1.70455 1.30664 1.10022 1.18058 1.26589 0.92056 0.99279 0.93145 1.77988 1.14840 1.06209 1.18285 1.50554 1.14270 1.26515 1.24817 1.22409 0.78236 0.99133 1.05964 0.94066 0.90589 0.90891 0.89859 0.89205 0.91084 0.93109 0.92670 0.91534 0.96184 0.97207 0.79398 0.93907 0.74420 0.85342 0.86976 0.86170 0.87681 0.73884 0.89735 0.87775 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 71.98 0.68 -1.60 16 2 C 0.14 2.40 2.57 44.99 0.12 2.52 16 3 H 0.06 1.39 7.58 -2.39 -0.02 1.38 16 4 C -0.12 -1.79 4.75 30.59 0.15 -1.64 16 5 C -0.11 -2.27 5.10 30.59 0.16 -2.12 16 6 C -0.11 -3.28 5.33 30.59 0.16 -3.12 16 7 C 0.15 5.86 6.26 86.38 0.54 6.40 16 8 N -0.75 -38.73 5.60 -343.44 -1.92 -40.65 16 9 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 10 H 0.07 4.02 7.83 -2.92 -0.02 3.99 16 11 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 12 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 13 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 14 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 N -0.71 -9.45 4.53 -442.54 -2.00 -11.45 16 18 C 0.51 9.42 7.87 87.66 0.69 10.11 16 19 O -0.58 -17.77 16.16 16.00 0.26 -17.51 16 20 C 0.05 0.44 6.42 71.24 0.46 0.90 16 21 O -0.39 -6.70 9.86 -129.94 -1.28 -7.99 16 22 C 0.14 1.44 6.26 71.24 0.45 1.89 16 23 C 0.27 4.90 7.61 138.23 1.05 5.95 16 24 N -0.56 -13.01 11.19 -191.77 -2.15 -15.15 16 25 C 0.19 3.85 13.03 180.76 2.36 6.21 16 26 N -0.34 -7.30 12.70 -61.24 -0.78 -8.08 16 27 N -0.37 -6.25 4.04 -359.87 -1.45 -7.70 16 28 C 0.08 0.55 11.33 127.77 1.45 2.00 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.39 7.75 -2.38 -0.02 1.37 16 35 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.42 2.76 8.60 -92.71 -0.80 1.96 16 43 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.12 0.08 7.12 -2.39 -0.02 0.06 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.25 2.98 8.06 -2.91 -0.02 2.95 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.13 -0.10 7.11 -2.39 -0.02 -0.12 16 Total: -1.00 -89.89 421.68 1.97 -87.91 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.57 Total: 21.28 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 9.56 Total: 10.11 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -8.02 Total: -142.16 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.02 Total: -25.50 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -89.89 1.97 -87.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175960391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.681 kcal (2) G-P(sol) polarization free energy of solvation -89.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds