Wall clock time and date at job start Sat Apr 11 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40448 * 126.82050 * 2 1 4 4 C 1.30715 * 106.79261 * 179.97438 * 3 2 1 5 5 N 1.33244 * 108.94545 * 0.02562 * 4 3 2 6 6 C 1.30832 * 109.83031 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.96108 * 179.97438 * 6 5 4 8 8 O 1.42897 * 109.47189 * 90.02117 * 7 6 5 9 9 C 1.42898 * 114.00081 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47395 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99448 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00149 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00145 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47228 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46971 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46971 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47211 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47211 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.46977 * 180.02562 * 18 17 16 20 20 C 1.36935 * 119.99943 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99769 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99926 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00067 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99867 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47237 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47374 * 119.99945 * 24 22 20 27 27 H 1.48503 * 109.46649 * 239.99498 * 24 22 20 28 28 H 1.09002 * 109.46976 * 269.99565 * 1 2 3 29 29 H 1.08997 * 109.47563 * 30.00045 * 1 2 3 30 30 H 1.09004 * 109.46586 * 149.99797 * 1 2 3 31 31 H 1.08005 * 125.52506 * 180.26044 * 4 3 2 32 32 H 1.09000 * 109.46726 * 210.02437 * 7 6 5 33 33 H 1.09002 * 109.46654 * 330.02426 * 7 6 5 34 34 H 1.09001 * 109.46971 * 300.00359 * 9 8 7 35 35 H 1.08995 * 109.46958 * 60.00164 * 9 8 7 36 36 H 0.97003 * 120.00511 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.47231 * 300.00768 * 13 12 10 38 38 H 1.09008 * 109.46571 * 60.00305 * 13 12 10 39 39 H 1.09001 * 109.47002 * 300.00317 * 14 13 12 40 40 H 1.08995 * 109.47090 * 60.00223 * 14 13 12 41 41 H 1.09001 * 109.47068 * 299.99728 * 15 14 13 42 42 H 1.08995 * 109.47480 * 59.99913 * 15 14 13 43 43 H 1.08993 * 109.47517 * 300.00139 * 16 15 14 44 44 H 1.09008 * 109.47225 * 59.99998 * 16 15 14 45 45 H 1.09002 * 109.47196 * 300.00577 * 17 16 15 46 46 H 1.09008 * 109.46622 * 60.00125 * 17 16 15 47 47 H 1.09001 * 109.47002 * 300.00264 * 18 17 16 48 48 H 1.08995 * 109.47090 * 60.00169 * 18 17 16 49 49 H 0.96998 * 119.99874 * 359.97438 * 19 18 17 50 50 H 0.97006 * 119.99824 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 7 3.5096 -0.6556 0.0003 6 6 2.2707 -1.0761 0.0002 7 6 1.8248 -2.5156 -0.0006 8 8 1.6834 -2.9712 1.3464 9 6 1.2613 -4.3318 1.4585 10 6 1.1453 -4.7035 2.9143 11 8 1.3988 -3.8838 3.7714 12 7 0.7600 -5.9468 3.2637 13 6 0.6478 -6.3084 4.6789 14 6 0.1970 -7.7655 4.7989 15 6 0.0792 -8.1429 6.2770 16 6 -0.3711 -9.6002 6.3969 17 6 -0.4882 -9.9778 7.8750 18 6 -0.9391 -11.4349 7.9949 19 7 -1.0519 -11.7962 9.4102 20 6 -1.4425 -13.0597 9.7652 21 1 -1.6678 -13.7898 9.0019 22 6 -1.5488 -13.4022 11.1062 23 7 -1.2737 -12.5127 12.0365 24 14 -2.0809 -15.1262 11.5905 25 1 -2.3290 -15.9298 10.3667 26 1 -1.0102 -15.7670 12.3955 27 1 -3.3273 -15.0518 12.3945 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3632 -0.8900 -0.5139 31 1 4.4255 1.2876 0.0047 32 1 0.8673 -2.5989 -0.5148 33 1 2.5676 -3.1257 -0.5145 34 1 0.2920 -4.4525 0.9747 35 1 1.9920 -4.9799 0.9747 36 1 0.5577 -6.6026 2.5781 37 1 1.6170 -6.1872 5.1629 38 1 -0.0833 -5.6604 5.1626 39 1 -0.7721 -7.8870 4.3149 40 1 0.9283 -8.4131 4.3154 41 1 1.0481 -8.0213 6.7613 42 1 -0.6523 -7.4952 6.7602 43 1 -1.3398 -9.7222 5.9125 44 1 0.3609 -10.2476 5.9138 45 1 0.4807 -9.8558 8.3591 46 1 -1.2200 -9.3304 8.3584 47 1 -1.9082 -11.5563 7.5109 48 1 -0.2078 -12.0825 7.5114 49 1 -0.8491 -11.1406 10.0958 50 1 -1.3484 -12.7520 12.9736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179956929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:10 Heat of formation + Delta-G solvation = -23.717367 kcal Electronic energy + Delta-G solvation = -26889.743010 eV Core-core repulsion = 22759.930608 eV Total energy + Delta-G solvation = -4129.812402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.18042 -40.84221 -38.79068 -37.85884 -36.71506 -35.30757 -35.10786 -33.55567 -33.08965 -31.69313 -29.90885 -28.65096 -27.86682 -26.99040 -25.55372 -23.61916 -23.11722 -22.23619 -22.04073 -21.75015 -21.31346 -19.12160 -18.53959 -18.15759 -17.86516 -17.36070 -16.99291 -16.88293 -16.67035 -16.29902 -16.08118 -15.94760 -15.48990 -15.37808 -15.22380 -15.10564 -14.52389 -14.20272 -14.10995 -14.00580 -13.90276 -13.41166 -13.29748 -13.09923 -13.03005 -12.92586 -12.65178 -12.59690 -12.37687 -12.11302 -12.00178 -11.79596 -11.78614 -11.46147 -11.32845 -11.18075 -10.97841 -10.94356 -10.86832 -10.81624 -10.67665 -10.12365 -9.01385 -7.96484 -5.26060 0.35151 1.29092 1.47085 1.48496 1.58015 1.58804 1.63506 2.01713 2.55768 2.80641 3.34737 3.37438 3.50857 3.68658 3.75222 3.83883 4.03382 4.03760 4.08069 4.24485 4.25138 4.27249 4.31512 4.35133 4.36225 4.38019 4.56189 4.60599 4.62151 4.65792 4.79970 4.87151 4.99702 5.00013 5.08511 5.17617 5.19160 5.30630 5.35082 5.36003 5.43521 5.48671 5.55102 5.58080 5.69838 5.87737 6.26459 6.57371 6.97372 7.25906 7.31796 8.09099 8.31596 9.27701 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.046795 B = 0.001029 C = 0.001026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.208922 B =27194.422646 C =27295.221028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.371 5.371 3 N -0.346 5.346 4 C 0.192 3.808 5 N -0.561 5.561 6 C 0.267 3.733 7 C 0.142 3.858 8 O -0.396 6.396 9 C 0.049 3.951 10 C 0.502 3.498 11 O -0.585 6.585 12 N -0.711 5.711 13 C 0.120 3.880 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.103 4.103 17 C -0.118 4.118 18 C 0.148 3.852 19 N -0.752 5.752 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.976 3.024 25 H -0.264 1.264 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.245 0.755 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.422 0.578 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 22.317 -35.972 42.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.163 5.163 3 N -0.175 5.175 4 C -0.110 4.110 5 N -0.291 5.291 6 C -0.010 4.010 7 C 0.064 3.936 8 O -0.314 6.314 9 C -0.030 4.030 10 C 0.289 3.711 11 O -0.464 6.464 12 N -0.366 5.366 13 C -0.004 4.004 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.156 4.156 18 C 0.022 3.978 19 N -0.395 5.395 20 C -0.381 4.381 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.188 1.188 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.146 0.854 31 H 0.261 0.739 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.204 0.796 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.344 23.376 -35.267 42.442 hybrid contribution -0.238 -0.812 0.969 1.287 sum 3.105 22.564 -34.297 41.171 Atomic orbital electron populations 1.22405 0.71218 1.07108 1.05032 1.50554 1.09517 1.03369 1.52814 1.78002 1.02879 1.09498 1.27146 1.26592 0.96603 0.90332 0.97518 1.70445 1.20993 1.12483 1.25154 1.24399 0.86239 0.93190 0.97203 1.20979 1.03884 0.84275 0.84481 1.88023 1.89589 1.27922 1.25892 1.22459 1.04561 0.83711 0.92280 1.21028 0.76115 0.82031 0.91884 1.90759 1.50592 1.51200 1.53858 1.45750 1.68863 1.12782 1.09177 1.21322 1.00818 0.96675 0.81545 1.21681 1.03289 0.93426 0.96900 1.21466 1.01644 0.95869 0.96402 1.21413 1.02243 0.96341 0.94065 1.21657 1.00667 0.94905 0.98399 1.20884 0.97274 0.94949 0.84706 1.42693 1.82024 1.11786 1.02965 1.19736 1.36362 0.90240 0.91729 0.90528 1.25630 1.03438 1.02115 0.95777 1.69838 1.57286 1.35580 0.99612 0.85030 0.77006 0.79428 0.78044 1.18796 1.21909 1.21890 0.89871 0.87868 0.85384 0.73878 0.86191 0.87248 0.85295 0.86241 0.74017 0.93024 0.92752 0.89532 0.89712 0.92232 0.92091 0.91035 0.91139 0.92896 0.92833 0.96172 0.96228 0.79635 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.33 127.77 1.45 1.89 16 2 N -0.37 -5.62 4.04 -359.87 -1.45 -7.07 16 3 N -0.35 -6.80 12.70 -61.24 -0.78 -7.57 16 4 C 0.19 3.46 13.03 180.76 2.36 5.81 16 5 N -0.56 -11.47 11.19 -191.77 -2.15 -13.62 16 6 C 0.27 4.21 7.61 138.23 1.05 5.27 16 7 C 0.14 0.98 6.26 71.24 0.45 1.43 16 8 O -0.40 -5.56 9.86 -129.94 -1.28 -6.85 16 9 C 0.05 0.28 6.42 71.24 0.46 0.74 16 10 C 0.50 7.96 7.91 87.66 0.69 8.65 16 11 O -0.58 -17.11 16.50 16.00 0.26 -16.84 16 12 N -0.71 -7.15 5.56 -463.05 -2.57 -9.72 16 13 C 0.12 1.77 5.67 86.38 0.49 2.26 16 14 C -0.12 -1.29 5.33 30.59 0.16 -1.13 16 15 C -0.12 -2.01 5.21 30.59 0.16 -1.85 16 16 C -0.10 -2.18 5.21 30.59 0.16 -2.02 16 17 C -0.12 -3.70 5.33 30.59 0.16 -3.54 16 18 C 0.15 5.96 6.26 86.38 0.54 6.50 16 19 N -0.75 -39.69 5.60 -343.45 -1.92 -41.61 16 20 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 23 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 24 Si 0.98 46.48 29.55 68.60 2.03 48.50 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.13 -0.31 7.11 -2.39 -0.02 -0.33 16 31 H 0.25 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.12 -0.29 7.13 -2.39 -0.02 -0.30 16 33 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.42 0.68 8.47 -92.71 -0.79 -0.11 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 49 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16 50 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -92.89 423.42 1.30 -91.59 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.56 Total: 17.21 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 9.43 Total: 6.49 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -8.59 Total: -140.10 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.02 Total: -23.69 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -92.89 1.30 -91.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179956929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.872 kcal (2) G-P(sol) polarization free energy of solvation -92.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds