Wall clock time and date at job start Sat Apr 11 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47302 * 269.95645 * 7 6 5 9 9 C 1.42891 * 114.00067 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47115 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99843 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00198 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99968 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46946 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47107 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.46985 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.46985 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.46946 * 180.02562 * 18 17 16 20 20 C 1.36939 * 119.99744 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00159 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99642 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00176 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00009 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47168 * 59.99508 * 24 22 20 26 26 H 1.48494 * 109.47424 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46687 * 299.99694 * 24 22 20 28 28 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 29 29 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 30 30 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 31 31 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 33 33 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 34 34 H 1.09002 * 109.47146 * 300.00000 * 9 8 7 35 35 H 1.09002 * 109.47416 * 60.00238 * 9 8 7 36 36 H 0.96997 * 119.99983 * 0.02562 * 12 10 9 37 37 H 1.08991 * 109.47727 * 299.99896 * 13 12 10 38 38 H 1.08998 * 109.47010 * 60.00620 * 13 12 10 39 39 H 1.08993 * 109.47449 * 300.00533 * 14 13 12 40 40 H 1.09002 * 109.47115 * 60.00622 * 14 13 12 41 41 H 1.09002 * 109.47465 * 300.00524 * 15 14 13 42 42 H 1.09005 * 109.47172 * 60.00705 * 15 14 13 43 43 H 1.08990 * 109.47480 * 300.00140 * 16 15 14 44 44 H 1.08998 * 109.46655 * 60.00683 * 16 15 14 45 45 H 1.09002 * 109.47425 * 300.00425 * 17 16 15 46 46 H 1.09002 * 109.46663 * 60.00373 * 17 16 15 47 47 H 1.08991 * 109.46928 * 300.00542 * 18 17 16 48 48 H 1.08998 * 109.46655 * 60.00559 * 18 17 16 49 49 H 0.96997 * 120.00048 * 0.02562 * 19 18 17 50 50 H 0.97002 * 120.00011 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 8 1.7103 -2.9753 -1.3628 9 6 1.3010 -4.3391 -1.4825 10 6 1.1882 -4.7035 -2.9405 11 8 1.4337 -3.8766 -3.7930 12 7 0.8146 -5.9484 -3.2970 13 6 0.7044 -6.3025 -4.7142 14 6 0.2675 -7.7632 -4.8425 15 6 0.1518 -8.1328 -6.3226 16 6 -0.2845 -9.5937 -6.4509 17 6 -0.3996 -9.9635 -7.9311 18 6 -0.8365 -11.4242 -8.0593 19 7 -0.9461 -11.7785 -9.4766 20 6 -1.3256 -13.0434 -9.8388 21 1 -1.5446 -13.7797 -9.0796 22 6 -1.4289 -13.3792 -11.1817 23 7 -1.1626 -12.4817 -12.1069 24 14 -1.9474 -15.1045 -11.6758 25 1 -3.2981 -15.3910 -11.1294 26 1 -1.9814 -15.2061 -13.1569 27 1 -0.9753 -16.0877 -11.1339 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9701 2.1169 -0.0004 32 1 2.5963 -3.1320 0.4970 33 1 0.8911 -2.6214 0.5006 34 1 2.0380 -4.9831 -1.0026 35 1 0.3330 -4.4717 -0.9994 36 1 0.6179 -6.6097 -2.6151 37 1 -0.0333 -5.6589 -5.1933 38 1 1.6719 -6.1693 -5.1983 39 1 1.0054 -8.4066 -4.3635 40 1 -0.6999 -7.8969 -4.3584 41 1 -0.5864 -7.4893 -6.8013 42 1 1.1190 -7.9991 -6.8072 43 1 0.4540 -10.2368 -5.9724 44 1 -1.2516 -9.7279 -5.9663 45 1 -1.1379 -9.3204 -8.4100 46 1 0.5677 -9.8294 -8.4153 47 1 -0.0985 -12.0675 -7.5803 48 1 -1.8039 -11.5579 -7.5752 49 1 -0.7498 -11.1171 -10.1584 50 1 -1.2344 -12.7165 -13.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179960701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:15 Heat of formation + Delta-G solvation = -4.424808 kcal Electronic energy + Delta-G solvation = -26914.049726 eV Core-core repulsion = 22785.073912 eV Total energy + Delta-G solvation = -4128.975814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.64874 -40.23220 -38.33788 -36.82505 -35.63009 -35.43021 -33.99994 -32.33619 -31.94036 -30.28574 -29.00080 -28.30218 -27.15352 -26.24632 -23.99568 -22.94936 -22.31737 -21.64388 -21.44483 -20.67394 -20.64805 -18.13383 -17.75719 -17.38813 -17.07105 -16.96815 -16.66537 -16.22378 -15.86103 -15.66925 -15.37364 -15.04397 -14.64410 -14.29864 -14.08892 -14.08180 -13.53431 -13.49425 -13.38808 -13.21386 -12.76352 -12.72576 -12.61796 -12.38144 -12.02563 -11.75209 -11.39702 -11.20333 -10.93183 -10.92545 -10.78218 -10.73699 -10.73193 -10.52024 -10.46727 -10.27119 -10.23810 -9.97938 -9.85655 -9.63555 -9.49027 -8.83848 -6.88717 -5.73653 -3.02239 1.05517 1.83697 2.16554 2.17706 2.52299 3.28679 3.45507 3.49382 3.50950 3.82038 3.89613 4.02404 4.16990 4.23222 4.33808 4.41830 4.47078 4.50652 4.54862 4.63655 4.65951 4.71117 4.91477 4.94316 5.20143 5.24540 5.33578 5.36190 5.53261 5.54435 5.62077 5.66796 5.69151 5.91248 5.93715 5.99720 6.11654 6.16175 6.24562 6.32401 6.33358 6.41315 6.47926 6.91477 6.95533 7.02568 7.71458 7.78511 8.18784 8.45730 9.56249 10.15907 10.50374 11.49425 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.046959 B = 0.001030 C = 0.001026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.127386 B =27179.790755 C =27279.170413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.469 5.469 3 C 0.158 3.842 4 N -0.296 5.296 5 N -0.269 5.269 6 C 0.172 3.828 7 C 0.150 3.850 8 O -0.357 6.357 9 C 0.045 3.955 10 C 0.511 3.489 11 O -0.516 6.516 12 N -0.729 5.729 13 C 0.118 3.882 14 C -0.130 4.130 15 C -0.117 4.117 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.222 0.778 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 25.343 33.012 41.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.160 5.160 3 C -0.129 4.129 4 N -0.136 5.136 5 N -0.112 5.112 6 C -0.095 4.095 7 C 0.071 3.929 8 O -0.274 6.274 9 C -0.035 4.035 10 C 0.295 3.705 11 O -0.390 6.390 12 N -0.383 5.383 13 C -0.005 4.005 14 C -0.168 4.168 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.213 1.213 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.239 0.761 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.353 25.907 32.211 41.404 hybrid contribution -1.927 -1.102 -0.057 2.220 sum 0.426 24.806 32.154 40.613 Atomic orbital electron populations 1.22201 0.74927 1.05992 1.04263 1.46192 1.09483 1.06692 1.53636 1.26551 0.87122 0.95010 1.04258 1.74324 1.18110 1.03007 1.18126 1.74285 1.16880 1.03380 1.16631 1.24227 0.87505 0.91336 1.06451 1.20505 1.01155 0.86235 0.84956 1.88094 1.89305 1.25681 1.24314 1.22253 1.01372 0.84702 0.95188 1.20147 0.77559 0.82417 0.90371 1.90782 1.47356 1.48808 1.52039 1.45908 1.70498 1.12505 1.09347 1.21481 1.02252 0.96234 0.80482 1.21828 1.02003 0.94243 0.98724 1.21525 1.02248 0.97389 0.94345 1.21497 1.01254 0.94937 0.97416 1.21736 1.01665 0.97965 0.95138 1.20652 0.97016 0.92177 0.87686 1.42388 1.82556 1.12198 1.00782 1.19214 1.37821 0.88894 0.91260 0.91282 1.24745 1.02636 0.97952 0.95720 1.69655 1.55673 1.33326 0.99711 0.86259 0.78409 0.84230 0.77250 1.21284 1.21649 1.21263 0.89628 0.88732 0.88495 0.76133 0.88931 0.90898 0.89433 0.89816 0.76469 0.91221 0.91147 0.91179 0.91249 0.91599 0.91559 0.92079 0.92112 0.92089 0.92059 0.96607 0.96620 0.78329 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.07 10.89 59.85 0.65 0.72 16 2 N -0.47 -2.70 3.15 -122.69 -0.39 -3.08 16 3 C 0.16 1.04 12.74 -89.94 -1.15 -0.11 16 4 N -0.30 -3.32 12.21 29.69 0.36 -2.96 16 5 N -0.27 -3.22 12.21 32.80 0.40 -2.82 16 6 C 0.17 1.44 7.66 -154.99 -1.19 0.25 16 7 C 0.15 0.77 6.11 36.00 0.22 0.99 16 8 O -0.36 -2.94 9.86 -55.14 -0.54 -3.48 16 9 C 0.04 0.22 6.42 36.01 0.23 0.45 16 10 C 0.51 4.49 7.91 -10.99 -0.09 4.40 16 11 O -0.52 -7.42 16.50 -14.35 -0.24 -7.66 16 12 N -0.73 -4.59 5.56 -60.30 -0.33 -4.93 16 13 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 14 C -0.13 -0.92 5.33 -26.73 -0.14 -1.06 16 15 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 16 C -0.11 -1.33 5.22 -26.73 -0.14 -1.47 16 17 C -0.13 -2.04 5.33 -26.73 -0.14 -2.18 16 18 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 19 N -0.74 -19.34 5.60 -59.91 -0.34 -19.67 16 20 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 24 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.09 0.09 7.81 -51.93 -0.41 -0.31 16 30 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.22 0.39 8.06 -52.49 -0.42 -0.04 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.11 7.86 -51.93 -0.41 -0.30 16 34 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.40 1.15 8.47 -40.82 -0.35 0.81 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.38 10.54 7.67 -40.82 -0.31 10.23 16 50 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 423.68 15.07 6.38 6.38 Total: -1.00 -41.79 423.68 -9.79 -51.58 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.63 Total: -0.03 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.18 Total: -2.85 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.43 Total: -61.59 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.78 Total: -11.14 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -41.79 -9.79 -51.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179960701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.160 kcal (2) G-P(sol) polarization free energy of solvation -41.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds