Wall clock time and date at job start Sat Apr 11 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47302 * 269.95645 * 7 6 5 9 9 C 1.42891 * 114.00067 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47115 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99843 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00198 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99968 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46946 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47107 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.46985 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.46985 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.46946 * 180.02562 * 18 17 16 20 20 C 1.36939 * 119.99744 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00159 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99642 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00176 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00009 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47168 * 59.99508 * 24 22 20 26 26 H 1.48494 * 109.47424 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46687 * 299.99694 * 24 22 20 28 28 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 29 29 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 30 30 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 31 31 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 33 33 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 34 34 H 1.09002 * 109.47146 * 300.00000 * 9 8 7 35 35 H 1.09002 * 109.47416 * 60.00238 * 9 8 7 36 36 H 0.96997 * 119.99983 * 0.02562 * 12 10 9 37 37 H 1.08991 * 109.47727 * 299.99896 * 13 12 10 38 38 H 1.08998 * 109.47010 * 60.00620 * 13 12 10 39 39 H 1.08993 * 109.47449 * 300.00533 * 14 13 12 40 40 H 1.09002 * 109.47115 * 60.00622 * 14 13 12 41 41 H 1.09002 * 109.47465 * 300.00524 * 15 14 13 42 42 H 1.09005 * 109.47172 * 60.00705 * 15 14 13 43 43 H 1.08990 * 109.47480 * 300.00140 * 16 15 14 44 44 H 1.08998 * 109.46655 * 60.00683 * 16 15 14 45 45 H 1.09002 * 109.47425 * 300.00425 * 17 16 15 46 46 H 1.09002 * 109.46663 * 60.00373 * 17 16 15 47 47 H 1.08991 * 109.46928 * 300.00542 * 18 17 16 48 48 H 1.08998 * 109.46655 * 60.00559 * 18 17 16 49 49 H 0.96997 * 120.00048 * 0.02562 * 19 18 17 50 50 H 0.97002 * 120.00011 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 8 1.7103 -2.9753 -1.3628 9 6 1.3010 -4.3391 -1.4825 10 6 1.1882 -4.7035 -2.9405 11 8 1.4337 -3.8766 -3.7930 12 7 0.8146 -5.9484 -3.2970 13 6 0.7044 -6.3025 -4.7142 14 6 0.2675 -7.7632 -4.8425 15 6 0.1518 -8.1328 -6.3226 16 6 -0.2845 -9.5937 -6.4509 17 6 -0.3996 -9.9635 -7.9311 18 6 -0.8365 -11.4242 -8.0593 19 7 -0.9461 -11.7785 -9.4766 20 6 -1.3256 -13.0434 -9.8388 21 1 -1.5446 -13.7797 -9.0796 22 6 -1.4289 -13.3792 -11.1817 23 7 -1.1626 -12.4817 -12.1069 24 14 -1.9474 -15.1045 -11.6758 25 1 -3.2981 -15.3910 -11.1294 26 1 -1.9814 -15.2061 -13.1569 27 1 -0.9753 -16.0877 -11.1339 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9701 2.1169 -0.0004 32 1 2.5963 -3.1320 0.4970 33 1 0.8911 -2.6214 0.5006 34 1 2.0380 -4.9831 -1.0026 35 1 0.3330 -4.4717 -0.9994 36 1 0.6179 -6.6097 -2.6151 37 1 -0.0333 -5.6589 -5.1933 38 1 1.6719 -6.1693 -5.1983 39 1 1.0054 -8.4066 -4.3635 40 1 -0.6999 -7.8969 -4.3584 41 1 -0.5864 -7.4893 -6.8013 42 1 1.1190 -7.9991 -6.8072 43 1 0.4540 -10.2368 -5.9724 44 1 -1.2516 -9.7279 -5.9663 45 1 -1.1379 -9.3204 -8.4100 46 1 0.5677 -9.8294 -8.4153 47 1 -0.0985 -12.0675 -7.5803 48 1 -1.8039 -11.5579 -7.5752 49 1 -0.7498 -11.1171 -10.1584 50 1 -1.2344 -12.7165 -13.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179960701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:14 Heat of formation + Delta-G solvation = -34.100615 kcal Electronic energy + Delta-G solvation = -26915.336566 eV Core-core repulsion = 22785.073912 eV Total energy + Delta-G solvation = -4130.262654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.15833 -40.86337 -38.81544 -37.86607 -36.72389 -36.03100 -35.31505 -33.55659 -32.75298 -31.66903 -29.73753 -28.59974 -28.01673 -27.01094 -25.55505 -23.62454 -23.43506 -22.25386 -22.08484 -22.01620 -21.36154 -19.12060 -18.57107 -18.19558 -17.83052 -17.48724 -17.16974 -16.94399 -16.68391 -16.39570 -16.27752 -15.91128 -15.74316 -15.36657 -15.20985 -15.13659 -14.58847 -14.29142 -14.12097 -13.90684 -13.67950 -13.41992 -13.24288 -13.06741 -13.00658 -12.90433 -12.62136 -12.60443 -12.39252 -12.20931 -12.00305 -11.79991 -11.78945 -11.47072 -11.46597 -11.33461 -11.15736 -10.92354 -10.92295 -10.86534 -10.45983 -10.14017 -9.01528 -7.96169 -5.25966 0.60658 1.46845 1.50056 1.50709 1.55869 1.57042 1.67804 1.98124 2.56048 2.89079 3.37297 3.43903 3.63163 3.73176 3.77979 3.84430 3.96164 4.02516 4.03122 4.18172 4.23887 4.25279 4.30698 4.32903 4.35435 4.38747 4.57653 4.59854 4.65004 4.68143 4.79233 4.84764 4.86307 4.98904 4.99310 5.07797 5.07996 5.16769 5.29900 5.35033 5.42304 5.47922 5.54489 5.57411 5.82496 5.91183 6.26367 6.55425 7.23787 7.31760 7.62810 8.09140 8.31742 9.27562 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.046959 B = 0.001030 C = 0.001026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.127386 B =27179.790755 C =27279.170413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.354 5.354 5 N -0.327 5.327 6 C 0.164 3.836 7 C 0.151 3.849 8 O -0.398 6.398 9 C 0.048 3.952 10 C 0.503 3.497 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.120 3.880 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.118 4.118 18 C 0.148 3.852 19 N -0.752 5.752 20 C -0.253 4.253 21 H 0.076 0.924 22 C -0.077 4.077 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.276 1.276 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.263 0.737 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.422 0.578 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 24.448 35.801 43.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.193 5.193 5 N -0.170 5.170 6 C -0.105 4.105 7 C 0.073 3.927 8 O -0.316 6.316 9 C -0.031 4.031 10 C 0.290 3.710 11 O -0.463 6.463 12 N -0.366 5.366 13 C -0.004 4.004 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.156 4.156 18 C 0.022 3.978 19 N -0.395 5.395 20 C -0.384 4.384 21 H 0.094 0.906 22 C -0.269 4.269 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.202 1.202 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.279 0.721 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.038 0.962 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.381 24.964 35.088 43.064 hybrid contribution -1.381 -0.798 -0.888 1.826 sum -1.000 24.166 34.200 41.888 Atomic orbital electron populations 1.22579 0.72037 1.07093 1.06250 1.46487 1.11090 1.05674 1.52389 1.27316 0.86191 0.96769 1.01832 1.74173 1.21005 1.03287 1.20867 1.74138 1.19542 1.04116 1.19157 1.24837 0.87164 0.93265 1.05241 1.20781 1.03544 0.84370 0.84055 1.88027 1.89936 1.27453 1.26175 1.22442 1.04534 0.83797 0.92297 1.21008 0.76089 0.82103 0.91817 1.90754 1.50561 1.50823 1.54198 1.45753 1.69198 1.12449 1.09174 1.21324 1.00852 0.96754 0.81423 1.21682 1.03345 0.93371 0.96906 1.21467 1.01690 0.95874 0.96337 1.21413 1.02275 0.96324 0.94052 1.21656 1.00706 0.94895 0.98359 1.20880 0.97268 0.94977 0.84678 1.42672 1.82503 1.11358 1.02918 1.19670 1.36988 0.90051 0.91724 0.90562 1.25636 1.03344 1.02115 0.95769 1.69825 1.57278 1.35438 0.99732 0.85160 0.78439 0.79418 0.76449 1.20154 1.22016 1.20200 0.87105 0.88444 0.86693 0.72106 0.88087 0.86617 0.86559 0.85387 0.74044 0.92647 0.93071 0.89780 0.89495 0.92020 0.92260 0.91185 0.91009 0.92792 0.92915 0.96287 0.96174 0.79632 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.04 10.89 127.77 1.39 1.35 16 2 N -0.47 -4.76 3.15 -542.07 -1.71 -6.47 16 3 C 0.17 2.11 12.74 180.11 2.30 4.40 16 4 N -0.35 -8.36 12.21 -59.99 -0.73 -9.10 16 5 N -0.33 -8.26 12.21 -50.16 -0.61 -8.88 16 6 C 0.16 2.69 7.66 137.98 1.06 3.75 16 7 C 0.15 1.27 6.11 71.24 0.43 1.71 16 8 O -0.40 -6.05 9.86 -129.94 -1.28 -7.33 16 9 C 0.05 0.33 6.42 71.24 0.46 0.79 16 10 C 0.50 8.32 7.91 87.66 0.69 9.02 16 11 O -0.58 -17.40 16.50 16.01 0.26 -17.13 16 12 N -0.71 -7.57 5.56 -463.07 -2.57 -10.14 16 13 C 0.12 1.81 5.67 86.38 0.49 2.30 16 14 C -0.12 -1.33 5.33 30.59 0.16 -1.17 16 15 C -0.12 -2.04 5.21 30.59 0.16 -1.88 16 16 C -0.10 -2.20 5.22 30.60 0.16 -2.04 16 17 C -0.12 -3.72 5.33 30.60 0.16 -3.56 16 18 C 0.15 5.99 6.26 86.38 0.54 6.53 16 19 N -0.75 -39.82 5.60 -343.47 -1.92 -41.75 16 20 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 23 N -0.97 -60.83 13.06 21.65 0.28 -60.54 16 24 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H 0.11 -0.61 8.14 -2.39 -0.02 -0.62 16 29 H 0.10 -0.08 7.81 -2.39 -0.02 -0.09 16 30 H 0.11 -0.48 8.14 -2.38 -0.02 -0.50 16 31 H 0.26 0.44 8.06 -2.91 -0.02 0.41 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 -0.10 7.86 -2.39 -0.02 -0.12 16 34 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.42 0.95 8.47 -92.71 -0.79 0.17 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.37 20.94 7.67 -92.71 -0.71 20.23 16 50 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -96.87 423.68 2.50 -94.38 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.56 Total: 14.97 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 9.31 Total: 3.48 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -7.27 Total: -136.87 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -1.02 Total: -24.47 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -96.87 2.50 -94.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179960701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.276 kcal (2) G-P(sol) polarization free energy of solvation -96.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds