Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99596 * 2 1 4 4 C 1.53009 * 109.46692 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47103 * 65.00060 * 4 3 2 6 6 C 1.36937 * 120.00243 * 270.00279 * 5 4 3 7 7 H 1.08000 * 120.00023 * 16.09779 * 6 5 4 8 8 C 1.38811 * 120.00260 * 196.10099 * 6 5 4 9 9 N 1.31620 * 119.99835 * 22.24437 * 8 6 5 10 10 Si 1.86799 * 120.00141 * 202.24516 * 8 6 5 11 11 H 1.48500 * 109.47218 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47018 * 120.00187 * 10 8 6 13 13 H 1.48498 * 109.46907 * 240.00104 * 10 8 6 14 14 C 1.46501 * 120.00160 * 89.99533 * 5 4 3 15 15 C 1.50707 * 109.46601 * 84.01634 * 14 5 4 16 16 O 1.21280 * 119.99862 * 0.02562 * 15 14 5 17 17 N 1.34773 * 119.99598 * 179.97438 * 15 14 5 18 18 C 1.47044 * 120.45590 * 359.90658 * 17 15 14 19 19 C 1.53369 * 108.59512 * 235.04725 * 18 17 15 20 20 N 1.46965 * 108.77975 * 310.83363 * 19 18 17 21 21 C 1.34779 * 120.59486 * 235.12538 * 20 19 18 22 22 O 1.21280 * 119.99763 * 359.97438 * 21 20 19 23 23 C 1.50701 * 119.99933 * 179.97438 * 21 20 19 24 24 C 1.52995 * 117.49598 * 248.61443 * 23 21 20 25 25 C 1.52996 * 60.00198 * 252.51131 * 24 23 21 26 26 C 1.46968 * 118.81118 * 55.13355 * 20 19 18 27 27 C 1.46972 * 120.59147 * 180.02562 * 17 15 14 28 28 H 1.08995 * 109.47085 * 60.00007 * 1 2 3 29 29 H 1.09002 * 109.47103 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46943 * 299.99684 * 1 2 3 31 31 H 1.08995 * 109.47147 * 60.00708 * 3 2 1 32 32 H 1.09001 * 109.47560 * 299.99974 * 3 2 1 33 33 H 1.09004 * 109.46910 * 305.00094 * 4 3 2 34 34 H 1.08997 * 109.46743 * 184.99947 * 4 3 2 35 35 H 0.97000 * 119.99731 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47189 * 324.02310 * 14 5 4 37 37 H 1.08998 * 109.47578 * 204.01749 * 14 5 4 38 38 H 1.08997 * 109.48906 * 115.39939 * 18 17 15 39 39 H 1.09001 * 109.76849 * 354.86389 * 18 17 15 40 40 H 1.08997 * 109.60994 * 190.99827 * 19 18 17 41 41 H 1.09004 * 109.61011 * 70.66352 * 19 18 17 42 42 H 1.09003 * 115.54784 * 34.32364 * 23 21 20 43 43 H 1.09001 * 117.50376 * 0.02562 * 24 23 21 44 44 H 1.09004 * 117.49784 * 145.02341 * 24 23 21 45 45 H 1.08998 * 117.49956 * 252.51466 * 25 24 23 46 46 H 1.09000 * 117.50162 * 107.48645 * 25 24 23 47 47 H 1.09003 * 109.60276 * 64.52738 * 26 20 19 48 48 H 1.08998 * 109.61043 * 184.85816 * 26 20 19 49 49 H 1.08995 * 109.60926 * 5.03645 * 27 17 15 50 50 H 1.09003 * 109.60875 * 244.52065 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3370 7 1 3.6318 -1.4275 -0.5935 8 6 4.8169 -1.3667 -2.3779 9 7 5.7257 -0.6585 -3.0143 10 14 4.4964 -3.1384 -2.8755 11 1 3.4344 -3.7113 -2.0100 12 1 4.0575 -3.1827 -4.2935 13 1 5.7430 -3.9299 -2.7182 14 6 4.2863 1.4007 -2.4148 15 6 5.7036 1.9018 -2.3085 16 8 6.3869 1.5907 -1.3561 17 7 6.2119 2.6949 -3.2724 18 6 5.3932 3.0757 -4.4330 19 6 6.1439 2.6823 -5.7112 20 7 7.5243 3.1783 -5.6209 21 6 8.0328 3.9712 -6.5849 22 8 7.3498 4.2811 -7.5380 23 6 9.4499 4.4728 -6.4784 24 6 9.6530 5.9692 -6.2333 25 6 9.9686 5.3690 -7.6047 26 6 8.3405 2.7941 -4.4606 27 6 7.5925 3.1906 -3.1823 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1765 0.0889 35 1 6.2287 -1.0565 -3.7419 36 1 3.6023 2.2488 -2.4453 37 1 4.1763 0.8123 -3.3257 38 1 5.2272 4.1529 -4.4231 39 1 4.4362 2.5552 -4.3958 40 1 5.6513 3.1266 -6.5761 41 1 6.1510 1.5969 -5.8119 42 1 10.1581 3.7858 -6.0151 43 1 8.7618 6.5910 -6.1486 44 1 10.4951 6.2671 -5.6085 45 1 11.0182 5.2719 -7.8822 46 1 9.2849 5.5957 -8.4228 47 1 8.5040 1.7164 -4.4693 48 1 9.2999 3.3098 -4.5013 49 1 8.0851 2.7460 -2.3176 50 1 7.5858 4.2762 -3.0845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194891338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -36.153926 kcal Electronic energy + Delta-G solvation = -31277.329139 eV Core-core repulsion = 27114.684696 eV Total energy + Delta-G solvation = -4162.644443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.32292 -38.81770 -37.40835 -36.73890 -35.98027 -34.89267 -33.44572 -31.50159 -31.27882 -29.00896 -27.88106 -26.34679 -25.78492 -24.76470 -23.52833 -22.90308 -22.63059 -21.77159 -20.57840 -19.31830 -18.16311 -17.37294 -16.74311 -16.15533 -15.87306 -15.72658 -15.38949 -15.29569 -15.05409 -14.77127 -14.66082 -14.47382 -14.24100 -14.17315 -13.55958 -13.12415 -13.08018 -12.82816 -12.50175 -12.34817 -12.16583 -11.93142 -11.78524 -11.57402 -11.26581 -11.20840 -11.16922 -11.01359 -10.88644 -10.77834 -10.76318 -10.62384 -10.39481 -10.33535 -9.94148 -9.78982 -9.74255 -9.03772 -8.85458 -8.80040 -8.25162 -7.72096 -6.82306 -5.74365 -3.03682 2.47745 2.93390 3.43040 3.52065 3.56419 3.70029 3.79128 4.14530 4.38107 4.45638 4.58221 4.59071 4.70711 4.88658 5.09138 5.14808 5.28998 5.33978 5.38440 5.41491 5.46916 5.54407 5.60690 5.62667 5.67477 5.69637 5.75210 5.82720 5.88665 5.92715 5.93128 5.99799 6.01840 6.06181 6.16192 6.22537 6.27200 6.41558 6.54875 6.60517 6.90555 7.05330 7.28230 7.46194 7.82523 7.94864 8.19877 8.28977 8.44707 9.22556 9.58877 9.88746 10.32266 11.35680 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.003102 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.448364 B = 9023.611440 C = 9791.021932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.045 3.955 4 C 0.150 3.850 5 N -0.565 5.565 6 C -0.225 4.225 7 H 0.080 0.920 8 C -0.007 4.007 9 N -0.903 5.903 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.296 1.296 14 C 0.165 3.835 15 C 0.533 3.467 16 O -0.526 6.526 17 N -0.629 5.629 18 C 0.109 3.891 19 C 0.097 3.903 20 N -0.601 5.601 21 C 0.543 3.457 22 O -0.550 6.550 23 C -0.194 4.194 24 C -0.151 4.151 25 C -0.149 4.149 26 C 0.095 3.905 27 C 0.106 3.894 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.248 0.752 36 H 0.032 0.968 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 12.458 -3.865 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.035 4.035 4 C 0.022 3.978 5 N -0.283 5.283 6 C -0.354 4.354 7 H 0.098 0.902 8 C -0.203 4.203 9 N -0.550 5.550 10 Si 0.731 3.269 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.223 1.223 14 C 0.034 3.966 15 C 0.321 3.679 16 O -0.399 6.399 17 N -0.368 5.368 18 C -0.016 4.016 19 C -0.026 4.026 20 N -0.333 5.333 21 C 0.332 3.668 22 O -0.429 6.429 23 C -0.215 4.215 24 C -0.189 4.189 25 C -0.187 4.187 26 C -0.029 4.029 27 C -0.019 4.019 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.142 0.858 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.394 12.135 -3.882 12.964 hybrid contribution -0.082 -0.885 -0.418 0.982 sum 2.312 11.251 -4.300 12.264 Atomic orbital electron populations 1.22639 0.83449 1.01767 0.98688 1.88115 1.17401 1.27781 1.94963 1.23418 0.97912 0.84401 0.97758 1.20789 0.89330 0.97151 0.90486 1.43777 1.74982 1.03187 1.06331 1.19340 1.25338 0.81120 1.09599 0.90179 1.24740 0.96724 0.97651 1.01174 1.69948 1.23113 1.36318 1.25582 0.86226 0.77451 0.85187 0.78027 1.20355 1.21943 1.22314 1.20628 0.88923 0.92932 0.94123 1.22267 0.91652 0.73736 0.80246 1.90504 1.61311 1.54771 1.33284 1.48363 1.12163 1.52836 1.23421 1.21840 0.95111 0.99444 0.85189 1.22053 0.81367 1.00269 0.98943 1.47955 1.14159 1.49022 1.22142 1.19635 0.87625 0.77792 0.81777 1.90657 1.61313 1.58615 1.32322 1.22223 0.95950 0.95615 1.07744 1.22913 1.03723 0.92382 0.99869 1.22939 1.02017 1.01189 0.92535 1.22226 0.93921 1.01549 0.85214 1.21612 0.84773 0.97876 0.97610 0.94910 0.90493 0.95370 0.95095 0.94457 0.92380 0.92937 0.94152 0.95015 0.87726 0.92486 0.88605 0.88719 0.90289 0.85756 0.88316 0.87821 0.88054 0.87516 0.90370 0.89438 0.88335 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.11 10.08 -35.23 -0.36 -7.46 16 3 C 0.04 0.79 6.28 37.16 0.23 1.02 16 4 C 0.15 3.12 6.07 -4.04 -0.02 3.10 16 5 N -0.56 -13.68 2.01 -174.60 -0.35 -14.03 16 6 C -0.22 -6.09 9.17 -15.06 -0.14 -6.23 16 7 H 0.08 2.24 7.82 -52.49 -0.41 1.83 16 8 C -0.01 -0.18 4.86 -17.43 -0.08 -0.26 16 9 N -0.90 -24.69 9.32 55.49 0.52 -24.17 16 10 Si 0.90 21.96 29.61 -169.99 -5.03 16.93 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 14 C 0.16 3.63 3.71 -5.19 -0.02 3.61 16 15 C 0.53 11.81 5.92 -10.98 -0.06 11.74 16 16 O -0.53 -13.83 15.55 5.56 0.09 -13.75 16 17 N -0.63 -11.20 2.95 -172.44 -0.51 -11.70 16 18 C 0.11 1.62 6.51 -3.55 -0.02 1.60 16 19 C 0.10 1.44 6.59 -3.60 -0.02 1.41 16 20 N -0.60 -8.52 2.95 -172.51 -0.51 -9.03 16 21 C 0.54 7.72 7.48 -10.98 -0.08 7.63 16 22 O -0.55 -9.48 15.66 5.56 0.09 -9.39 16 23 C -0.19 -2.04 4.98 -91.77 -0.46 -2.50 16 24 C -0.15 -1.31 10.23 -26.74 -0.27 -1.59 16 25 C -0.15 -1.38 10.04 -26.73 -0.27 -1.65 16 26 C 0.09 1.26 6.47 -3.62 -0.02 1.24 16 27 C 0.11 1.63 6.60 -3.61 -0.02 1.60 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.03 0.61 7.89 -51.93 -0.41 0.20 16 37 H 0.10 2.49 5.91 -51.93 -0.31 2.19 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.41 5.91 -51.93 -0.31 1.10 16 40 H 0.09 1.37 6.99 -51.93 -0.36 1.01 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.12 1.11 6.78 -51.93 -0.35 0.75 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.11 1.14 7.67 -51.93 -0.40 0.74 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.09 0.90 5.63 -51.93 -0.29 0.60 16 49 H 0.10 1.71 6.99 -51.93 -0.36 1.35 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -34.07 399.10 -8.46 -42.54 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.25 Total: 1.75 kcal Atomic # 6 Polarization: 22.48 SS G_CDS: -0.16 Total: 22.32 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.85 Total: -58.94 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.18 Total: -30.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.07 -8.46 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194891338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.382 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds