Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99596 * 2 1 4 4 C 1.53009 * 109.46692 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47103 * 65.00060 * 4 3 2 6 6 C 1.36937 * 120.00243 * 270.00279 * 5 4 3 7 7 H 1.08000 * 120.00023 * 16.09779 * 6 5 4 8 8 C 1.38811 * 120.00260 * 196.10099 * 6 5 4 9 9 N 1.31620 * 119.99835 * 22.24437 * 8 6 5 10 10 Si 1.86799 * 120.00141 * 202.24516 * 8 6 5 11 11 H 1.48500 * 109.47218 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47018 * 120.00187 * 10 8 6 13 13 H 1.48498 * 109.46907 * 240.00104 * 10 8 6 14 14 C 1.46501 * 120.00160 * 89.99533 * 5 4 3 15 15 C 1.50707 * 109.46601 * 84.01634 * 14 5 4 16 16 O 1.21280 * 119.99862 * 0.02562 * 15 14 5 17 17 N 1.34773 * 119.99598 * 179.97438 * 15 14 5 18 18 C 1.47044 * 120.45590 * 359.90658 * 17 15 14 19 19 C 1.53369 * 108.59512 * 235.04725 * 18 17 15 20 20 N 1.46965 * 108.77975 * 310.83363 * 19 18 17 21 21 C 1.34779 * 120.59486 * 235.12538 * 20 19 18 22 22 O 1.21280 * 119.99763 * 359.97438 * 21 20 19 23 23 C 1.50701 * 119.99933 * 179.97438 * 21 20 19 24 24 C 1.52995 * 117.49598 * 248.61443 * 23 21 20 25 25 C 1.52996 * 60.00198 * 252.51131 * 24 23 21 26 26 C 1.46968 * 118.81118 * 55.13355 * 20 19 18 27 27 C 1.46972 * 120.59147 * 180.02562 * 17 15 14 28 28 H 1.08995 * 109.47085 * 60.00007 * 1 2 3 29 29 H 1.09002 * 109.47103 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46943 * 299.99684 * 1 2 3 31 31 H 1.08995 * 109.47147 * 60.00708 * 3 2 1 32 32 H 1.09001 * 109.47560 * 299.99974 * 3 2 1 33 33 H 1.09004 * 109.46910 * 305.00094 * 4 3 2 34 34 H 1.08997 * 109.46743 * 184.99947 * 4 3 2 35 35 H 0.97000 * 119.99731 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47189 * 324.02310 * 14 5 4 37 37 H 1.08998 * 109.47578 * 204.01749 * 14 5 4 38 38 H 1.08997 * 109.48906 * 115.39939 * 18 17 15 39 39 H 1.09001 * 109.76849 * 354.86389 * 18 17 15 40 40 H 1.08997 * 109.60994 * 190.99827 * 19 18 17 41 41 H 1.09004 * 109.61011 * 70.66352 * 19 18 17 42 42 H 1.09003 * 115.54784 * 34.32364 * 23 21 20 43 43 H 1.09001 * 117.50376 * 0.02562 * 24 23 21 44 44 H 1.09004 * 117.49784 * 145.02341 * 24 23 21 45 45 H 1.08998 * 117.49956 * 252.51466 * 25 24 23 46 46 H 1.09000 * 117.50162 * 107.48645 * 25 24 23 47 47 H 1.09003 * 109.60276 * 64.52738 * 26 20 19 48 48 H 1.08998 * 109.61043 * 184.85816 * 26 20 19 49 49 H 1.08995 * 109.60926 * 5.03645 * 27 17 15 50 50 H 1.09003 * 109.60875 * 244.52065 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3370 7 1 3.6318 -1.4275 -0.5935 8 6 4.8169 -1.3667 -2.3779 9 7 5.7257 -0.6585 -3.0143 10 14 4.4964 -3.1384 -2.8755 11 1 3.4344 -3.7113 -2.0100 12 1 4.0575 -3.1827 -4.2935 13 1 5.7430 -3.9299 -2.7182 14 6 4.2863 1.4007 -2.4148 15 6 5.7036 1.9018 -2.3085 16 8 6.3869 1.5907 -1.3561 17 7 6.2119 2.6949 -3.2724 18 6 5.3932 3.0757 -4.4330 19 6 6.1439 2.6823 -5.7112 20 7 7.5243 3.1783 -5.6209 21 6 8.0328 3.9712 -6.5849 22 8 7.3498 4.2811 -7.5380 23 6 9.4499 4.4728 -6.4784 24 6 9.6530 5.9692 -6.2333 25 6 9.9686 5.3690 -7.6047 26 6 8.3405 2.7941 -4.4606 27 6 7.5925 3.1906 -3.1823 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1765 0.0889 35 1 6.2287 -1.0565 -3.7419 36 1 3.6023 2.2488 -2.4453 37 1 4.1763 0.8123 -3.3257 38 1 5.2272 4.1529 -4.4231 39 1 4.4362 2.5552 -4.3958 40 1 5.6513 3.1266 -6.5761 41 1 6.1510 1.5969 -5.8119 42 1 10.1581 3.7858 -6.0151 43 1 8.7618 6.5910 -6.1486 44 1 10.4951 6.2671 -5.6085 45 1 11.0182 5.2719 -7.8822 46 1 9.2849 5.5957 -8.4228 47 1 8.5040 1.7164 -4.4693 48 1 9.2999 3.3098 -4.5013 49 1 8.0851 2.7460 -2.3176 50 1 7.5858 4.2762 -3.0845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194891338.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -58.332676 kcal Electronic energy + Delta-G solvation = -31278.290881 eV Core-core repulsion = 27114.684696 eV Total energy + Delta-G solvation = -4163.606186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.48797 -40.30191 -38.82228 -38.03642 -36.99815 -36.62480 -34.86024 -33.41899 -32.52314 -30.59816 -29.35013 -27.96171 -27.09207 -25.83426 -25.15596 -24.23770 -23.31562 -23.01505 -22.17830 -20.66126 -19.35374 -18.72066 -18.47114 -17.52328 -17.33544 -17.06994 -16.84465 -16.51415 -16.38934 -16.30257 -15.98676 -15.70773 -15.61018 -15.30473 -15.20662 -14.81142 -14.40042 -14.29648 -13.83706 -13.54532 -13.49599 -13.37565 -13.16914 -12.79930 -12.67614 -12.60805 -12.55434 -12.39005 -12.36453 -12.29918 -12.11439 -11.97085 -11.82508 -11.70953 -11.51029 -11.38893 -10.86532 -10.69682 -10.36476 -10.20273 -10.10994 -9.13216 -8.72155 -7.78980 -5.08400 1.43429 1.45905 1.50383 1.60099 1.80813 2.31477 2.49696 2.65182 2.93376 3.14441 3.37949 3.42529 3.64667 3.80727 3.89981 3.94195 4.01439 4.13125 4.17475 4.21025 4.38129 4.38847 4.45022 4.47962 4.53521 4.59772 4.65782 4.67214 4.68049 4.76822 4.79043 4.81933 4.84788 4.90227 4.92543 4.99411 5.02543 5.05438 5.23367 5.25457 5.29401 5.40229 5.80532 5.89444 6.33470 6.35946 6.56898 6.80417 7.08861 7.22769 7.82606 8.01365 8.34005 9.27311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.003102 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.448364 B = 9023.611440 C = 9791.021932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.055 3.945 4 C 0.148 3.852 5 N -0.581 5.581 6 C -0.229 4.229 7 H 0.063 0.937 8 C -0.049 4.049 9 N -0.913 5.913 10 Si 0.952 3.048 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.305 1.305 14 C 0.167 3.833 15 C 0.533 3.467 16 O -0.576 6.576 17 N -0.627 5.627 18 C 0.111 3.889 19 C 0.101 3.899 20 N -0.602 5.602 21 C 0.539 3.461 22 O -0.586 6.586 23 C -0.208 4.208 24 C -0.135 4.135 25 C -0.149 4.149 26 C 0.105 3.895 27 C 0.105 3.895 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.241 0.759 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.133 0.867 45 H 0.127 0.873 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.127 0.873 49 H 0.077 0.923 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 14.418 -4.144 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.024 4.024 4 C 0.021 3.979 5 N -0.300 5.300 6 C -0.359 4.359 7 H 0.081 0.919 8 C -0.243 4.243 9 N -0.561 5.561 10 Si 0.783 3.217 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.233 1.233 14 C 0.037 3.963 15 C 0.322 3.678 16 O -0.453 6.453 17 N -0.364 5.364 18 C -0.013 4.013 19 C -0.022 4.022 20 N -0.334 5.334 21 C 0.330 3.670 22 O -0.467 6.467 23 C -0.229 4.229 24 C -0.172 4.172 25 C -0.186 4.186 26 C -0.018 4.018 27 C -0.019 4.019 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.163 0.837 43 H 0.107 0.893 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.145 0.855 49 H 0.095 0.905 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.605 14.138 -4.181 14.971 hybrid contribution -0.192 -1.433 -0.335 1.484 sum 2.413 12.705 -4.517 13.698 Atomic orbital electron populations 1.22823 0.80939 1.02831 1.00261 1.88047 1.20236 1.28800 1.95321 1.23204 0.95269 0.84305 0.99617 1.20901 0.91716 0.96779 0.88460 1.43924 1.75500 1.02651 1.07940 1.19334 1.24656 0.82730 1.09180 0.91878 1.25257 0.97045 1.00347 1.01673 1.70091 1.23518 1.36918 1.25565 0.85419 0.76607 0.82020 0.77618 1.20259 1.21641 1.23331 1.20596 0.89821 0.93274 0.92593 1.22132 0.91497 0.73775 0.80352 1.90475 1.62356 1.57005 1.35454 1.48259 1.13491 1.51572 1.23040 1.21967 0.94642 1.00772 0.83879 1.21890 0.82343 0.98982 0.99017 1.48021 1.13840 1.49003 1.22499 1.20315 0.88930 0.76949 0.80811 1.90639 1.62658 1.59837 1.33575 1.22279 0.93710 0.97165 1.09705 1.23037 1.04233 0.90323 0.99610 1.23019 1.02913 1.00528 0.92136 1.22165 0.95177 1.00604 0.83879 1.21754 0.83244 0.99109 0.97782 0.93994 0.89841 0.92987 0.91880 0.93660 0.94591 0.91998 0.94992 0.91843 0.89800 0.90028 0.88622 0.88336 0.92512 0.83674 0.89268 0.84868 0.85488 0.89545 0.92740 0.85478 0.90506 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -15.43 10.08 -148.98 -1.50 -16.94 16 3 C 0.05 1.86 6.28 71.99 0.45 2.31 16 4 C 0.15 6.16 6.07 86.38 0.52 6.68 16 5 N -0.58 -28.52 2.01 -706.32 -1.42 -29.94 16 6 C -0.23 -12.68 9.17 84.03 0.77 -11.91 16 7 H 0.06 3.64 7.82 -2.91 -0.02 3.62 16 8 C -0.05 -2.69 4.86 84.86 0.41 -2.28 16 9 N -0.91 -51.24 9.32 21.65 0.20 -51.04 16 10 Si 0.95 46.24 29.61 68.60 2.03 48.27 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 14 C 0.17 7.40 3.71 85.64 0.32 7.72 16 15 C 0.53 23.87 5.92 87.66 0.52 24.39 16 16 O -0.58 -31.00 15.55 -3.03 -0.05 -31.04 16 17 N -0.63 -22.02 2.95 -817.88 -2.41 -24.44 16 18 C 0.11 3.21 6.51 86.40 0.56 3.77 16 19 C 0.10 2.99 6.59 86.41 0.57 3.56 16 20 N -0.60 -16.40 2.95 -818.09 -2.41 -18.81 16 21 C 0.54 14.54 7.48 87.66 0.66 15.20 16 22 O -0.59 -19.86 15.66 -3.03 -0.05 -19.91 16 23 C -0.21 -3.78 4.98 -11.54 -0.06 -3.84 16 24 C -0.13 -1.87 10.23 30.59 0.31 -1.55 16 25 C -0.15 -2.35 10.04 30.59 0.31 -2.05 16 26 C 0.10 2.66 6.47 86.40 0.56 3.22 16 27 C 0.10 3.11 6.60 86.40 0.57 3.68 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.62 8.04 -2.38 -0.02 1.60 16 34 H 0.06 2.41 8.07 -2.39 -0.02 2.39 16 35 H 0.24 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.06 2.35 7.89 -2.39 -0.02 2.33 16 37 H 0.08 4.07 5.91 -2.39 -0.01 4.06 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.10 2.76 5.91 -2.39 -0.01 2.75 16 40 H 0.10 2.84 6.99 -2.39 -0.02 2.83 16 41 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.15 2.02 6.78 -2.39 -0.02 2.01 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.75 7.67 -2.39 -0.02 1.73 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.13 2.21 5.63 -2.39 -0.01 2.20 16 49 H 0.08 2.67 6.99 -2.39 -0.02 2.65 16 50 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -76.55 399.10 3.04 -73.51 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.93 Total: 19.44 kcal Atomic # 6 Polarization: 43.17 SS G_CDS: 7.72 Total: 50.90 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -6.05 Total: -124.23 kcal Atomic # 8 Polarization: -66.29 SS G_CDS: -1.60 Total: -67.89 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -76.55 3.04 -73.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194891338.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.174 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds