Wall clock time and date at job start Sat Apr 11 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00144 * 2 1 4 4 H 1.08999 * 109.47233 * 29.99360 * 3 2 1 5 5 C 1.50703 * 109.46558 * 269.99598 * 3 2 1 6 6 O 1.21276 * 120.00313 * 354.99746 * 5 3 2 7 7 N 1.34787 * 119.99759 * 174.99863 * 5 3 2 8 8 C 1.46924 * 120.63033 * 359.72119 * 7 5 3 9 9 C 1.53187 * 108.77642 * 126.66473 * 8 7 5 10 10 C 1.53041 * 109.31211 * 54.63373 * 9 8 7 11 11 C 1.53038 * 109.53768 * 298.63806 * 10 9 8 12 12 H 1.08999 * 109.49677 * 301.40907 * 11 10 9 13 13 N 1.46906 * 109.52465 * 181.33192 * 11 10 9 14 14 C 1.46902 * 110.99919 * 85.13866 * 13 11 10 15 15 C 1.50702 * 109.47114 * 179.97438 * 14 13 11 16 16 O 1.21297 * 119.99738 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00101 * 180.02562 * 15 14 13 18 18 C 1.37103 * 120.00055 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99766 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99998 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99988 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46889 * 60.00033 * 22 20 18 24 24 H 1.48500 * 109.47274 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47142 * 299.99876 * 22 20 18 26 26 C 1.46926 * 120.62918 * 180.02562 * 7 5 3 27 27 C 1.52997 * 109.47447 * 149.99915 * 3 2 1 28 28 C 1.52997 * 117.50035 * 8.61703 * 27 3 2 29 29 C 1.53000 * 60.00261 * 252.51116 * 28 27 3 30 30 H 1.09003 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47335 * 300.00155 * 1 2 3 32 32 H 1.08995 * 109.46708 * 60.00911 * 1 2 3 33 33 H 1.09003 * 109.58516 * 246.45674 * 8 7 5 34 34 H 1.09002 * 109.58479 * 6.87832 * 8 7 5 35 35 H 1.08999 * 109.49975 * 294.68379 * 9 8 7 36 36 H 1.08998 * 109.50042 * 174.58459 * 9 8 7 37 37 H 1.09003 * 109.46022 * 178.61192 * 10 9 8 38 38 H 1.09007 * 109.45589 * 58.65622 * 10 9 8 39 39 H 1.00902 * 110.99577 * 321.19189 * 13 11 10 40 40 H 1.08997 * 109.47538 * 300.00254 * 14 13 11 41 41 H 1.09003 * 109.46577 * 60.00573 * 14 13 11 42 42 H 0.96998 * 120.00053 * 0.02562 * 17 15 14 43 43 H 0.97006 * 120.00110 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.58798 * 353.11768 * 26 7 5 45 45 H 1.08996 * 109.58371 * 113.54749 * 26 7 5 46 46 H 1.09002 * 115.55083 * 154.32949 * 27 3 2 47 47 H 1.09004 * 117.49819 * 0.02562 * 28 27 3 48 48 H 1.09005 * 117.50055 * 145.02259 * 28 27 3 49 49 H 1.08997 * 117.49927 * 252.50855 * 29 28 27 50 50 H 1.09003 * 117.49507 * 107.48162 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2146 1.7642 -1.4209 6 8 1.9793 1.0103 -2.3413 7 7 2.6590 3.0123 -1.6687 8 6 2.9426 3.9390 -0.5645 9 6 4.3684 4.4755 -0.7249 10 6 4.5239 5.0909 -2.1175 11 6 4.2898 4.0157 -3.1812 12 1 5.0022 3.2030 -3.0399 13 7 4.4704 4.5993 -4.5172 14 6 5.8857 4.5858 -4.9106 15 6 6.0313 5.1901 -6.2834 16 8 5.0524 5.5929 -6.8756 17 7 7.2491 5.2830 -6.8531 18 6 7.3816 5.8333 -8.1019 19 1 6.5101 6.1927 -8.6288 20 6 8.6372 5.9286 -8.6894 21 7 9.6975 5.4908 -8.0485 22 14 8.8176 6.6777 -10.3911 23 1 8.3240 8.0782 -10.3703 24 1 10.2482 6.6635 -10.7891 25 1 8.0241 5.8876 -11.3664 26 6 2.8626 3.4742 -3.0486 27 6 3.3589 1.2633 0.7212 28 6 3.9138 -0.1108 1.1019 29 6 3.3635 0.8188 2.1853 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 2.2350 4.7677 -0.5920 34 1 2.8551 3.4125 0.3860 35 1 5.0801 3.6585 -0.6067 36 1 4.5583 5.2363 0.0322 37 1 5.5303 5.4955 -2.2254 38 1 3.7953 5.8917 -2.2441 39 1 4.0929 5.5342 -4.5575 40 1 6.4676 5.1658 -4.1943 41 1 6.2486 3.5580 -4.9262 42 1 8.0319 4.9605 -6.3797 43 1 10.5741 5.5576 -8.4585 44 1 2.7223 2.6410 -3.7373 45 1 2.1485 4.2650 -3.2782 46 1 4.0740 2.0312 0.4262 47 1 3.3183 -0.9848 0.8380 48 1 4.9944 -0.2472 1.0571 49 1 4.0819 1.2940 2.8533 50 1 2.4056 0.5564 2.6345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207934843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:00 Heat of formation + Delta-G solvation = -81.089087 kcal Electronic energy + Delta-G solvation = -30063.462985 eV Core-core repulsion = 25898.870007 eV Total energy + Delta-G solvation = -4164.592978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89118 -38.97811 -38.17487 -37.47897 -36.45574 -35.12448 -33.85424 -32.35529 -31.25817 -30.66652 -28.91348 -26.73560 -26.20784 -25.31057 -23.97283 -22.71748 -22.52020 -21.53343 -21.03990 -19.58800 -19.07317 -17.88571 -17.73423 -17.14493 -16.53338 -16.14440 -15.83115 -15.43563 -15.34139 -14.99790 -14.73546 -14.56822 -14.49229 -14.11966 -14.00521 -13.82113 -13.52120 -13.35421 -13.23052 -13.13349 -12.58891 -12.16246 -11.98616 -11.93877 -11.74325 -11.68958 -11.51534 -11.42948 -11.27496 -11.10409 -11.02463 -10.97313 -10.82027 -10.73155 -10.51615 -10.43546 -10.20688 -9.49344 -9.43421 -8.92573 -8.43550 -8.05089 -7.95182 -6.40922 -3.81795 2.32106 2.62748 3.20953 3.24181 3.26510 3.31150 3.49284 3.91184 4.05969 4.09215 4.28737 4.30759 4.45242 4.52705 4.58281 4.62301 4.67925 4.78829 4.90854 4.93426 5.02330 5.07756 5.12723 5.16149 5.19963 5.26939 5.30601 5.34278 5.37245 5.47851 5.51742 5.59995 5.67114 5.70894 5.75495 5.82601 5.92979 5.97102 6.04457 6.09668 6.21555 6.30855 6.62897 7.14424 7.20867 7.55805 7.63609 7.98197 8.06744 8.61853 9.18448 9.54803 10.06275 10.76736 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.001997 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.067527 B =14019.210760 C =14216.958666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.107 3.893 4 H 0.087 0.913 5 C 0.496 3.504 6 O -0.520 6.520 7 N -0.609 5.609 8 C 0.096 3.904 9 C -0.130 4.130 10 C -0.153 4.153 11 C 0.077 3.923 12 H 0.080 0.920 13 N -0.661 5.661 14 C 0.053 3.947 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.123 3.877 27 C -0.170 4.170 28 C -0.156 4.156 29 C -0.168 4.168 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.351 0.649 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.108 0.892 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 -6.065 25.764 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.045 3.955 4 H 0.105 0.895 5 C 0.282 3.718 6 O -0.394 6.394 7 N -0.345 5.345 8 C -0.026 4.026 9 C -0.169 4.169 10 C -0.193 4.193 11 C -0.035 4.035 12 H 0.098 0.902 13 N -0.292 5.292 14 C -0.080 4.080 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C 0.001 3.999 27 C -0.189 4.189 28 C -0.193 4.193 29 C -0.205 4.205 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.171 0.829 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.088 0.912 46 H 0.142 0.858 47 H 0.127 0.873 48 H 0.113 0.887 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.280 -6.987 24.439 28.678 hybrid contribution 0.959 1.282 -0.024 1.601 sum -12.321 -5.704 24.415 27.936 Atomic orbital electron populations 1.22877 0.80502 1.03377 1.00041 1.87981 1.20066 1.24786 1.94354 1.21400 0.95306 0.86679 0.92090 0.89496 1.21212 0.77364 0.81247 0.91946 1.90732 1.49735 1.53019 1.45943 1.48148 1.65965 1.12716 1.07659 1.21969 0.97096 0.93540 0.90040 1.21873 0.96289 1.00948 0.97824 1.22340 1.02680 0.99136 0.95107 1.21894 0.97173 0.96822 0.87576 0.90161 1.59990 1.16605 1.28683 1.23941 1.21688 0.88936 1.01437 0.95903 1.19794 0.84262 0.85375 0.87972 1.90526 1.37905 1.53326 1.64961 1.41854 1.06949 1.54147 1.17051 1.19656 0.94566 1.35998 0.92686 0.87964 1.25266 0.94895 0.97738 1.00069 1.69606 0.99036 1.46853 1.38857 0.85910 0.77013 0.79538 0.81711 1.19930 1.20988 1.19853 1.21551 0.95795 1.00797 0.81797 1.22435 0.96757 1.01585 0.98099 1.22899 1.00938 0.93931 1.01566 1.22971 1.03279 1.03890 0.90346 0.89076 0.93993 0.93525 0.91036 0.89189 0.91309 0.90442 0.91276 0.91293 0.82892 0.93812 0.89599 0.77467 0.91825 0.88150 0.91194 0.85809 0.87322 0.88661 0.88372 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.81 101.05 1.09 1.31 16 2 O -0.35 -3.71 8.24 -55.09 -0.45 -4.16 16 3 C 0.11 0.96 2.05 -27.88 -0.06 0.91 16 4 H 0.09 0.57 7.33 -51.93 -0.38 0.19 16 5 C 0.50 6.07 7.06 -10.98 -0.08 5.99 16 6 O -0.52 -8.75 15.92 -14.30 -0.23 -8.97 16 7 N -0.61 -6.32 2.97 -172.75 -0.51 -6.83 16 8 C 0.10 0.66 5.42 -3.71 -0.02 0.64 16 9 C -0.13 -0.91 5.92 -26.61 -0.16 -1.07 16 10 C -0.15 -1.46 5.14 -26.69 -0.14 -1.60 16 11 C 0.08 0.95 2.62 -67.57 -0.18 0.77 16 12 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 13 N -0.66 -10.60 5.88 -107.84 -0.63 -11.23 16 14 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 15 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 16 O -0.58 -15.97 15.78 5.54 0.09 -15.88 16 17 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 18 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 22 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.12 1.54 6.04 -3.69 -0.02 1.51 16 27 C -0.17 -1.29 4.45 -90.62 -0.40 -1.69 16 28 C -0.16 -1.24 9.87 -26.73 -0.26 -1.50 16 29 C -0.17 -0.99 10.19 -26.73 -0.27 -1.26 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.46 4.52 -51.93 -0.23 0.22 16 35 H 0.07 0.50 7.47 -51.93 -0.39 0.12 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.70 7.44 -51.93 -0.39 0.31 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.35 5.69 8.18 -39.29 -0.32 5.37 16 40 H 0.04 0.68 7.43 -51.93 -0.39 0.30 16 41 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 42 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.10 1.55 7.01 -51.93 -0.36 1.19 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.12 0.86 5.59 -51.93 -0.29 0.57 16 47 H 0.11 1.00 7.06 -51.93 -0.37 0.64 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -34.45 399.15 -8.93 -43.38 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -8.00 Total: 12.67 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -0.85 Total: 7.24 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.48 Total: -56.51 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.59 Total: -29.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.45 -8.93 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207934843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.705 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds