Wall clock time and date at job start Sat Apr 11 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00144 * 2 1 4 4 H 1.08999 * 109.47233 * 29.99360 * 3 2 1 5 5 C 1.50703 * 109.46558 * 269.99598 * 3 2 1 6 6 O 1.21276 * 120.00313 * 354.99746 * 5 3 2 7 7 N 1.34787 * 119.99759 * 174.99863 * 5 3 2 8 8 C 1.46924 * 120.63033 * 359.72119 * 7 5 3 9 9 C 1.53187 * 108.77642 * 126.66473 * 8 7 5 10 10 C 1.53041 * 109.31211 * 54.63373 * 9 8 7 11 11 C 1.53038 * 109.53768 * 298.63806 * 10 9 8 12 12 H 1.08999 * 109.49677 * 301.40907 * 11 10 9 13 13 N 1.46906 * 109.52465 * 181.33192 * 11 10 9 14 14 C 1.46902 * 110.99919 * 85.13866 * 13 11 10 15 15 C 1.50702 * 109.47114 * 179.97438 * 14 13 11 16 16 O 1.21297 * 119.99738 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00101 * 180.02562 * 15 14 13 18 18 C 1.37103 * 120.00055 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99766 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99998 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99988 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46889 * 60.00033 * 22 20 18 24 24 H 1.48500 * 109.47274 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47142 * 299.99876 * 22 20 18 26 26 C 1.46926 * 120.62918 * 180.02562 * 7 5 3 27 27 C 1.52997 * 109.47447 * 149.99915 * 3 2 1 28 28 C 1.52997 * 117.50035 * 8.61703 * 27 3 2 29 29 C 1.53000 * 60.00261 * 252.51116 * 28 27 3 30 30 H 1.09003 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47335 * 300.00155 * 1 2 3 32 32 H 1.08995 * 109.46708 * 60.00911 * 1 2 3 33 33 H 1.09003 * 109.58516 * 246.45674 * 8 7 5 34 34 H 1.09002 * 109.58479 * 6.87832 * 8 7 5 35 35 H 1.08999 * 109.49975 * 294.68379 * 9 8 7 36 36 H 1.08998 * 109.50042 * 174.58459 * 9 8 7 37 37 H 1.09003 * 109.46022 * 178.61192 * 10 9 8 38 38 H 1.09007 * 109.45589 * 58.65622 * 10 9 8 39 39 H 1.00902 * 110.99577 * 321.19189 * 13 11 10 40 40 H 1.08997 * 109.47538 * 300.00254 * 14 13 11 41 41 H 1.09003 * 109.46577 * 60.00573 * 14 13 11 42 42 H 0.96998 * 120.00053 * 0.02562 * 17 15 14 43 43 H 0.97006 * 120.00110 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.58798 * 353.11768 * 26 7 5 45 45 H 1.08996 * 109.58371 * 113.54749 * 26 7 5 46 46 H 1.09002 * 115.55083 * 154.32949 * 27 3 2 47 47 H 1.09004 * 117.49819 * 0.02562 * 28 27 3 48 48 H 1.09005 * 117.50055 * 145.02259 * 28 27 3 49 49 H 1.08997 * 117.49927 * 252.50855 * 29 28 27 50 50 H 1.09003 * 117.49507 * 107.48162 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2146 1.7642 -1.4209 6 8 1.9793 1.0103 -2.3413 7 7 2.6590 3.0123 -1.6687 8 6 2.9426 3.9390 -0.5645 9 6 4.3684 4.4755 -0.7249 10 6 4.5239 5.0909 -2.1175 11 6 4.2898 4.0157 -3.1812 12 1 5.0022 3.2030 -3.0399 13 7 4.4704 4.5993 -4.5172 14 6 5.8857 4.5858 -4.9106 15 6 6.0313 5.1901 -6.2834 16 8 5.0524 5.5929 -6.8756 17 7 7.2491 5.2830 -6.8531 18 6 7.3816 5.8333 -8.1019 19 1 6.5101 6.1927 -8.6288 20 6 8.6372 5.9286 -8.6894 21 7 9.6975 5.4908 -8.0485 22 14 8.8176 6.6777 -10.3911 23 1 8.3240 8.0782 -10.3703 24 1 10.2482 6.6635 -10.7891 25 1 8.0241 5.8876 -11.3664 26 6 2.8626 3.4742 -3.0486 27 6 3.3589 1.2633 0.7212 28 6 3.9138 -0.1108 1.1019 29 6 3.3635 0.8188 2.1853 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 2.2350 4.7677 -0.5920 34 1 2.8551 3.4125 0.3860 35 1 5.0801 3.6585 -0.6067 36 1 4.5583 5.2363 0.0322 37 1 5.5303 5.4955 -2.2254 38 1 3.7953 5.8917 -2.2441 39 1 4.0929 5.5342 -4.5575 40 1 6.4676 5.1658 -4.1943 41 1 6.2486 3.5580 -4.9262 42 1 8.0319 4.9605 -6.3797 43 1 10.5741 5.5576 -8.4585 44 1 2.7223 2.6410 -3.7373 45 1 2.1485 4.2650 -3.2782 46 1 4.0740 2.0312 0.4262 47 1 3.3183 -0.9848 0.8380 48 1 4.9944 -0.2472 1.0571 49 1 4.0819 1.2940 2.8533 50 1 2.4056 0.5564 2.6345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207934843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:59 Heat of formation + Delta-G solvation = -106.119025 kcal Electronic energy + Delta-G solvation = -30064.548365 eV Core-core repulsion = 25898.870007 eV Total energy + Delta-G solvation = -4165.678357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72631 -40.29175 -39.48156 -38.46542 -37.13984 -36.34212 -35.77788 -33.34952 -33.15089 -31.70457 -29.76026 -27.92858 -27.24245 -26.26853 -25.58433 -23.39038 -23.18397 -22.24101 -21.88839 -21.19360 -20.19527 -19.86437 -18.56218 -17.92274 -17.78252 -17.19772 -16.88406 -16.63979 -16.41467 -16.25027 -16.00584 -15.62769 -15.49595 -15.26477 -15.24670 -15.00099 -14.53473 -14.40656 -14.10806 -13.94129 -13.86751 -13.57519 -13.34516 -13.32301 -12.89237 -12.55205 -12.45513 -12.44675 -12.33291 -12.25017 -12.13505 -12.05549 -11.89218 -11.75272 -11.64590 -11.51752 -11.34068 -11.06866 -10.41936 -10.24980 -10.03828 -9.79393 -9.28543 -8.48073 -5.97158 1.38811 1.40751 1.43714 1.51895 1.78587 2.02435 2.28252 2.61233 2.92059 2.93637 3.18801 3.37422 3.49468 3.68849 3.76490 3.84104 3.89992 3.96922 4.10310 4.11721 4.21347 4.25435 4.28970 4.36738 4.41456 4.47930 4.51509 4.53035 4.55789 4.59958 4.78597 4.80268 4.84749 4.87069 4.88064 4.99279 5.06472 5.15648 5.22413 5.32751 5.37181 5.39240 5.41547 5.86160 5.97095 6.06234 6.34789 6.38792 6.57858 7.08817 7.10441 7.53548 8.08755 8.69056 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.001997 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.067527 B =14019.210760 C =14216.958666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.111 3.889 4 H 0.119 0.881 5 C 0.487 3.513 6 O -0.580 6.580 7 N -0.602 5.602 8 C 0.091 3.909 9 C -0.124 4.124 10 C -0.148 4.148 11 C 0.084 3.916 12 H 0.071 0.929 13 N -0.679 5.679 14 C 0.070 3.930 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.127 3.873 27 C -0.177 4.177 28 C -0.179 4.179 29 C -0.139 4.139 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.349 0.651 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.133 0.867 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.120 0.880 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.271 -4.891 28.701 31.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.049 3.951 4 H 0.136 0.864 5 C 0.276 3.724 6 O -0.459 6.459 7 N -0.336 5.336 8 C -0.030 4.030 9 C -0.163 4.163 10 C -0.187 4.187 11 C -0.027 4.027 12 H 0.089 0.911 13 N -0.311 5.311 14 C -0.062 4.062 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.199 1.199 26 C 0.004 3.996 27 C -0.195 4.195 28 C -0.216 4.216 29 C -0.176 4.176 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.169 0.831 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.150 0.850 47 H 0.107 0.893 48 H 0.117 0.883 49 H 0.138 0.862 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.887 -5.798 27.440 30.865 hybrid contribution 0.791 0.885 -0.923 1.504 sum -12.096 -4.914 26.517 29.556 Atomic orbital electron populations 1.23017 0.79443 1.04178 1.00546 1.87966 1.21421 1.25874 1.94251 1.21547 0.96802 0.86762 0.89940 0.86372 1.22011 0.76321 0.81099 0.92972 1.90701 1.52477 1.54764 1.47934 1.48230 1.64908 1.12862 1.07642 1.22308 0.97556 0.93557 0.89541 1.21875 0.96161 1.01582 0.96679 1.22267 1.02750 0.98127 0.95544 1.21847 0.96635 0.97358 0.86840 0.91064 1.59921 1.15568 1.28795 1.26833 1.21495 0.90580 1.01627 0.92516 1.20841 0.83036 0.83950 0.89714 1.90492 1.39042 1.54780 1.66638 1.41923 1.07787 1.54529 1.16695 1.19635 0.94501 1.38100 0.94239 0.90315 1.26062 0.94157 0.97579 1.03524 1.69667 0.99408 1.46820 1.40159 0.84977 0.77569 0.78665 0.77058 1.19489 1.19398 1.19896 1.21312 0.96167 0.99360 0.82787 1.22483 0.96045 1.01447 0.99522 1.22898 1.00978 0.93744 1.04007 1.23055 1.03724 1.01464 0.89332 0.88353 0.91020 0.95298 0.89265 0.86684 0.91409 0.87421 0.91439 0.90622 0.83087 0.90969 0.88691 0.76965 0.91241 0.92041 0.90690 0.84950 0.89342 0.88332 0.86213 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.81 113.37 1.23 1.58 16 2 O -0.38 -7.71 8.24 -129.99 -1.07 -8.78 16 3 C 0.11 1.82 2.05 29.85 0.06 1.88 16 4 H 0.12 1.16 7.33 -2.39 -0.02 1.14 16 5 C 0.49 11.92 7.06 87.66 0.62 12.54 16 6 O -0.58 -20.68 15.92 15.98 0.25 -20.43 16 7 N -0.60 -11.89 2.97 -818.83 -2.43 -14.32 16 8 C 0.09 0.93 5.42 86.36 0.47 1.40 16 9 C -0.12 -1.27 5.92 30.67 0.18 -1.09 16 10 C -0.15 -2.45 5.14 30.62 0.16 -2.29 16 11 C 0.08 2.03 2.62 45.00 0.12 2.14 16 12 H 0.07 1.85 7.80 -2.39 -0.02 1.83 16 13 N -0.68 -21.88 5.88 -495.10 -2.91 -24.79 16 14 C 0.07 2.46 5.97 85.56 0.51 2.97 16 15 C 0.44 21.22 7.82 87.66 0.69 21.91 16 16 O -0.62 -35.20 15.78 -3.08 -0.05 -35.25 16 17 N -0.57 -29.87 5.29 -306.99 -1.62 -31.49 16 18 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 21 N -0.92 -50.08 13.05 21.66 0.28 -49.79 16 22 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 26 C 0.13 3.23 6.04 86.37 0.52 3.75 16 27 C -0.18 -2.24 4.45 -10.79 -0.05 -2.29 16 28 C -0.18 -2.62 9.87 30.59 0.30 -2.32 16 29 C -0.14 -1.17 10.19 30.60 0.31 -0.86 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 0.65 4.52 -2.39 -0.01 0.64 16 35 H 0.07 0.75 7.47 -2.39 -0.02 0.74 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 1.18 7.44 -2.39 -0.02 1.16 16 38 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.35 11.36 8.18 -89.69 -0.73 10.63 16 40 H 0.07 2.14 7.43 -2.39 -0.02 2.12 16 41 H 0.09 3.18 8.06 -2.39 -0.02 3.16 16 42 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 43 H 0.28 14.18 8.31 -92.70 -0.77 13.41 16 44 H 0.06 2.05 7.01 -2.39 -0.02 2.03 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.13 1.43 5.59 -2.39 -0.01 1.42 16 47 H 0.09 1.66 7.06 -2.38 -0.02 1.64 16 48 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -78.99 399.15 0.38 -78.61 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -0.50 Total: 40.27 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 6.40 Total: 20.55 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -6.68 Total: -120.40 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -0.87 Total: -64.46 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -78.99 0.38 -78.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207934843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.509 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds