Wall clock time and date at job start Sat Apr 11 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00228 * 2 1 4 4 H 1.09000 * 109.47107 * 30.00355 * 3 2 1 5 5 C 1.50699 * 109.47438 * 269.99954 * 3 2 1 6 6 O 1.21280 * 119.99808 * 355.00628 * 5 3 2 7 7 N 1.34772 * 119.99949 * 174.99577 * 5 3 2 8 8 C 1.46923 * 120.63343 * 0.03442 * 7 5 3 9 9 C 1.53195 * 108.77575 * 233.58368 * 8 7 5 10 10 C 1.53046 * 109.30793 * 305.36150 * 9 8 7 11 11 C 1.53043 * 109.53700 * 61.36640 * 10 9 8 12 12 H 1.08998 * 109.49941 * 58.61981 * 11 10 9 13 13 N 1.46904 * 109.49411 * 178.68314 * 11 10 9 14 14 C 1.46900 * 110.99924 * 274.99612 * 13 11 10 15 15 C 1.50699 * 109.47147 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00080 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00050 * 179.97438 * 15 14 13 18 18 C 1.37097 * 119.99941 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00229 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99976 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99683 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00098 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46927 * 90.00313 * 22 20 18 24 24 H 1.48504 * 109.47361 * 210.00212 * 22 20 18 25 25 H 1.48497 * 109.47288 * 330.00390 * 22 20 18 26 26 C 1.46931 * 120.62926 * 180.02562 * 7 5 3 27 27 C 1.53006 * 109.46782 * 150.00086 * 3 2 1 28 28 C 1.52997 * 117.49943 * 8.74862 * 27 3 2 29 29 C 1.52999 * 117.50086 * 300.09156 * 27 3 2 30 30 H 1.08994 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47071 * 299.99861 * 1 2 3 32 32 H 1.08998 * 109.47462 * 59.99334 * 1 2 3 33 33 H 1.08996 * 109.59375 * 113.79430 * 8 7 5 34 34 H 1.09006 * 109.58686 * 353.36430 * 8 7 5 35 35 H 1.08990 * 109.49959 * 185.41234 * 9 8 7 36 36 H 1.08999 * 109.49609 * 65.30943 * 9 8 7 37 37 H 1.08998 * 109.45610 * 181.38442 * 10 9 8 38 38 H 1.08997 * 109.46079 * 301.34562 * 10 9 8 39 39 H 1.00896 * 110.99978 * 151.04601 * 13 11 10 40 40 H 1.09000 * 109.47612 * 300.00316 * 14 13 11 41 41 H 1.09008 * 109.47060 * 60.00350 * 14 13 11 42 42 H 0.97005 * 120.00059 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99836 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.58511 * 6.62918 * 26 7 5 45 45 H 1.09004 * 109.58611 * 246.20718 * 26 7 5 46 46 H 1.09004 * 115.54637 * 154.41496 * 27 3 2 47 47 H 1.09000 * 117.50230 * 0.02562 * 28 27 3 48 48 H 1.09005 * 117.49906 * 145.01604 * 28 27 3 49 49 H 1.09004 * 117.49436 * 214.98170 * 29 27 3 50 50 H 1.09005 * 117.49668 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6589 3.0124 -1.6684 8 6 2.9490 3.9367 -0.5639 9 6 2.1744 5.2383 -0.7937 10 6 2.5125 5.7903 -2.1805 11 6 2.0893 4.7809 -3.2503 12 1 1.0199 4.5879 -3.1656 13 7 2.3855 5.3251 -4.5822 14 6 1.2932 6.1870 -5.0536 15 6 1.6322 6.7260 -6.4194 16 8 2.6805 6.4218 -6.9484 17 7 0.7703 7.5453 -7.0536 18 6 1.0785 8.0353 -8.2963 19 1 2.0118 7.7644 -8.7673 20 6 0.1901 8.8804 -8.9499 21 7 -0.9454 9.2104 -8.3766 22 14 0.6104 9.5486 -10.6429 23 1 0.1024 8.6177 -11.6826 24 1 -0.0213 10.8809 -10.8202 25 1 2.0840 9.6784 -10.7720 26 6 2.8625 3.4745 -3.0483 27 6 3.3590 1.2630 0.7213 28 6 3.9152 -0.1113 1.0990 29 6 3.3639 0.8164 2.1846 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.0180 4.1480 -0.5352 34 1 2.6377 3.4880 0.3795 35 1 2.4546 5.9675 -0.0337 36 1 1.1043 5.0404 -0.7318 37 1 1.9815 6.7292 -2.3369 38 1 3.5862 5.9645 -2.2501 39 1 2.5723 4.5849 -5.2419 40 1 0.3716 5.6077 -5.1097 41 1 1.1592 7.0164 -4.3590 42 1 -0.0682 7.7884 -6.6307 43 1 -1.5654 9.8007 -8.8326 44 1 2.4942 2.7207 -3.7441 45 1 3.9245 3.6479 -3.2226 46 1 4.0736 2.0318 0.4272 47 1 3.3206 -0.9853 0.8334 48 1 4.9959 -0.2466 1.0539 49 1 4.0820 1.2911 2.8533 50 1 2.4061 0.5530 2.6336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207934844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:03 Heat of formation + Delta-G solvation = -82.254866 kcal Electronic energy + Delta-G solvation = -29942.274723 eV Core-core repulsion = 25777.631193 eV Total energy + Delta-G solvation = -4164.643530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90350 -38.98190 -38.19128 -37.45092 -36.47881 -35.12822 -33.85829 -32.43016 -31.26943 -30.67352 -28.93086 -26.72820 -26.34236 -25.28090 -23.92113 -22.82564 -22.71625 -21.56154 -20.50824 -19.63757 -19.15911 -17.89128 -17.70049 -17.20369 -16.53311 -16.26994 -15.85304 -15.42931 -15.31811 -15.04106 -14.81332 -14.68826 -14.46458 -14.12546 -13.95384 -13.80002 -13.66392 -13.35534 -13.24305 -13.07021 -12.57060 -12.27300 -11.97193 -11.92319 -11.86295 -11.74175 -11.52574 -11.45855 -11.12565 -11.08333 -11.01012 -10.88462 -10.77476 -10.77384 -10.56755 -10.39170 -10.21748 -9.50923 -9.48255 -8.90095 -8.46755 -8.11156 -7.96220 -6.41717 -3.82456 2.29103 2.54330 3.18124 3.22705 3.26711 3.32887 3.46185 3.90516 4.01307 4.07171 4.24656 4.28901 4.43336 4.54743 4.60447 4.63294 4.73363 4.79217 4.86289 4.91176 5.01333 5.04899 5.11624 5.17536 5.22805 5.25448 5.28000 5.36685 5.39013 5.47886 5.50830 5.63863 5.68947 5.69708 5.77696 5.84559 5.88934 5.94883 6.02687 6.13552 6.21479 6.31154 6.59978 7.09559 7.19624 7.55420 7.60794 7.91890 8.06281 8.61139 9.17904 9.54128 10.05538 10.76051 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.001927 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.043379 B =14530.256766 C =14789.434384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.107 3.893 4 H 0.089 0.911 5 C 0.496 3.504 6 O -0.523 6.523 7 N -0.606 5.606 8 C 0.101 3.899 9 C -0.136 4.136 10 C -0.110 4.110 11 C 0.075 3.925 12 H 0.045 0.955 13 N -0.661 5.661 14 C 0.052 3.948 15 C 0.441 3.559 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.110 3.890 27 C -0.168 4.168 28 C -0.157 4.157 29 C -0.167 4.167 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.351 0.649 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -13.362 25.599 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.045 3.955 4 H 0.107 0.893 5 C 0.283 3.717 6 O -0.398 6.398 7 N -0.342 5.342 8 C -0.022 4.022 9 C -0.174 4.174 10 C -0.148 4.148 11 C -0.036 4.036 12 H 0.063 0.937 13 N -0.294 5.294 14 C -0.080 4.080 15 C 0.226 3.774 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.013 4.013 27 C -0.187 4.187 28 C -0.194 4.194 29 C -0.204 4.204 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.172 0.828 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.140 0.860 47 H 0.127 0.873 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.393 -13.528 24.898 28.674 hybrid contribution -1.393 0.351 -0.872 1.681 sum 3.000 -13.177 24.025 27.565 Atomic orbital electron populations 1.22885 0.80408 1.03408 1.00130 1.87972 1.20135 1.24764 1.94352 1.21395 0.95385 0.86712 0.91976 0.89346 1.21243 0.77044 0.81390 0.92042 1.90723 1.49900 1.53220 1.45981 1.48096 1.66056 1.12630 1.07425 1.21965 1.00495 0.90303 0.89404 1.21961 1.00592 0.96493 0.98392 1.21556 1.02684 0.98457 0.92125 1.21824 0.97721 0.93212 0.90801 0.93748 1.60100 1.41786 1.24877 1.02638 1.21712 0.92136 0.97503 0.96682 1.19783 0.86098 0.84217 0.87261 1.90526 1.25579 1.62476 1.68055 1.41862 1.18990 1.41954 1.17243 1.19706 1.05169 1.25086 0.92868 0.87899 1.25271 0.95277 0.97328 1.00139 1.69613 1.09326 1.36366 1.39047 0.85848 0.78843 0.77971 0.81571 1.20422 1.20929 1.19390 1.21740 1.01114 0.95718 0.82705 1.22378 0.96660 1.01452 0.98165 1.22905 1.00845 0.93972 1.01697 1.22981 1.03305 1.03798 0.90345 0.89040 0.93902 0.93529 0.90712 0.89532 0.90180 0.91613 0.91271 0.90741 0.82839 0.93863 0.89607 0.77480 0.91886 0.89029 0.90158 0.85995 0.87344 0.88709 0.88346 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.81 101.05 1.09 1.32 16 2 O -0.36 -3.67 8.24 -55.09 -0.45 -4.12 16 3 C 0.11 0.95 2.04 -27.88 -0.06 0.89 16 4 H 0.09 0.60 7.08 -51.93 -0.37 0.23 16 5 C 0.50 5.95 7.06 -10.99 -0.08 5.88 16 6 O -0.52 -8.58 15.92 -14.30 -0.23 -8.80 16 7 N -0.61 -6.21 2.97 -172.79 -0.51 -6.73 16 8 C 0.10 0.70 4.92 -3.71 -0.02 0.68 16 9 C -0.14 -1.00 6.08 -26.61 -0.16 -1.16 16 10 C -0.11 -1.15 5.40 -26.68 -0.14 -1.29 16 11 C 0.08 0.94 2.64 -67.61 -0.18 0.76 16 12 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 13 N -0.66 -10.64 5.93 -107.88 -0.64 -11.28 16 14 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 15 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 16 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 17 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 22 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.11 1.32 5.70 -3.73 -0.02 1.30 16 27 C -0.17 -1.21 4.57 -90.62 -0.41 -1.62 16 28 C -0.16 -1.16 9.88 -26.70 -0.26 -1.42 16 29 C -0.17 -0.93 10.19 -26.70 -0.27 -1.21 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.24 8.09 -51.93 -0.42 -0.17 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.43 5.01 -51.93 -0.26 0.17 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.35 5.96 8.06 -39.29 -0.32 5.65 16 40 H 0.04 0.71 8.06 -51.93 -0.42 0.30 16 41 H 0.09 1.40 7.42 -51.92 -0.39 1.01 16 42 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.09 1.28 7.01 -51.93 -0.36 0.91 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.12 0.78 6.51 -51.93 -0.34 0.44 16 47 H 0.11 0.95 7.06 -51.93 -0.37 0.58 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -34.31 400.61 -9.03 -43.34 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -8.09 Total: 12.26 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.87 Total: 7.37 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.49 Total: -56.41 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.59 Total: -28.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.31 -9.03 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207934844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.917 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds