Wall clock time and date at job start Sat Apr 11 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00228 * 2 1 4 4 H 1.09000 * 109.47107 * 30.00355 * 3 2 1 5 5 C 1.50699 * 109.47438 * 269.99954 * 3 2 1 6 6 O 1.21280 * 119.99808 * 355.00628 * 5 3 2 7 7 N 1.34772 * 119.99949 * 174.99577 * 5 3 2 8 8 C 1.46923 * 120.63343 * 0.03442 * 7 5 3 9 9 C 1.53195 * 108.77575 * 233.58368 * 8 7 5 10 10 C 1.53046 * 109.30793 * 305.36150 * 9 8 7 11 11 C 1.53043 * 109.53700 * 61.36640 * 10 9 8 12 12 H 1.08998 * 109.49941 * 58.61981 * 11 10 9 13 13 N 1.46904 * 109.49411 * 178.68314 * 11 10 9 14 14 C 1.46900 * 110.99924 * 274.99612 * 13 11 10 15 15 C 1.50699 * 109.47147 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00080 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00050 * 179.97438 * 15 14 13 18 18 C 1.37097 * 119.99941 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00229 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99976 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99683 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00098 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46927 * 90.00313 * 22 20 18 24 24 H 1.48504 * 109.47361 * 210.00212 * 22 20 18 25 25 H 1.48497 * 109.47288 * 330.00390 * 22 20 18 26 26 C 1.46931 * 120.62926 * 180.02562 * 7 5 3 27 27 C 1.53006 * 109.46782 * 150.00086 * 3 2 1 28 28 C 1.52997 * 117.49943 * 8.74862 * 27 3 2 29 29 C 1.52999 * 117.50086 * 300.09156 * 27 3 2 30 30 H 1.08994 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47071 * 299.99861 * 1 2 3 32 32 H 1.08998 * 109.47462 * 59.99334 * 1 2 3 33 33 H 1.08996 * 109.59375 * 113.79430 * 8 7 5 34 34 H 1.09006 * 109.58686 * 353.36430 * 8 7 5 35 35 H 1.08990 * 109.49959 * 185.41234 * 9 8 7 36 36 H 1.08999 * 109.49609 * 65.30943 * 9 8 7 37 37 H 1.08998 * 109.45610 * 181.38442 * 10 9 8 38 38 H 1.08997 * 109.46079 * 301.34562 * 10 9 8 39 39 H 1.00896 * 110.99978 * 151.04601 * 13 11 10 40 40 H 1.09000 * 109.47612 * 300.00316 * 14 13 11 41 41 H 1.09008 * 109.47060 * 60.00350 * 14 13 11 42 42 H 0.97005 * 120.00059 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99836 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.58511 * 6.62918 * 26 7 5 45 45 H 1.09004 * 109.58611 * 246.20718 * 26 7 5 46 46 H 1.09004 * 115.54637 * 154.41496 * 27 3 2 47 47 H 1.09000 * 117.50230 * 0.02562 * 28 27 3 48 48 H 1.09005 * 117.49906 * 145.01604 * 28 27 3 49 49 H 1.09004 * 117.49436 * 214.98170 * 29 27 3 50 50 H 1.09005 * 117.49668 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6589 3.0124 -1.6684 8 6 2.9490 3.9367 -0.5639 9 6 2.1744 5.2383 -0.7937 10 6 2.5125 5.7903 -2.1805 11 6 2.0893 4.7809 -3.2503 12 1 1.0199 4.5879 -3.1656 13 7 2.3855 5.3251 -4.5822 14 6 1.2932 6.1870 -5.0536 15 6 1.6322 6.7260 -6.4194 16 8 2.6805 6.4218 -6.9484 17 7 0.7703 7.5453 -7.0536 18 6 1.0785 8.0353 -8.2963 19 1 2.0118 7.7644 -8.7673 20 6 0.1901 8.8804 -8.9499 21 7 -0.9454 9.2104 -8.3766 22 14 0.6104 9.5486 -10.6429 23 1 0.1024 8.6177 -11.6826 24 1 -0.0213 10.8809 -10.8202 25 1 2.0840 9.6784 -10.7720 26 6 2.8625 3.4745 -3.0483 27 6 3.3590 1.2630 0.7213 28 6 3.9152 -0.1113 1.0990 29 6 3.3639 0.8164 2.1846 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.0180 4.1480 -0.5352 34 1 2.6377 3.4880 0.3795 35 1 2.4546 5.9675 -0.0337 36 1 1.1043 5.0404 -0.7318 37 1 1.9815 6.7292 -2.3369 38 1 3.5862 5.9645 -2.2501 39 1 2.5723 4.5849 -5.2419 40 1 0.3716 5.6077 -5.1097 41 1 1.1592 7.0164 -4.3590 42 1 -0.0682 7.7884 -6.6307 43 1 -1.5654 9.8007 -8.8326 44 1 2.4942 2.7207 -3.7441 45 1 3.9245 3.6479 -3.2226 46 1 4.0736 2.0318 0.4272 47 1 3.3206 -0.9853 0.8334 48 1 4.9959 -0.2466 1.0539 49 1 4.0820 1.2911 2.8533 50 1 2.4061 0.5530 2.6336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207934844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:02 Heat of formation + Delta-G solvation = -106.949573 kcal Electronic energy + Delta-G solvation = -29943.345566 eV Core-core repulsion = 25777.631193 eV Total energy + Delta-G solvation = -4165.714373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.73045 -40.28972 -39.50291 -38.42534 -37.13007 -36.36506 -35.78144 -33.37007 -33.22436 -31.71456 -29.76628 -27.95808 -27.29930 -26.37038 -25.47564 -23.62702 -23.19118 -22.28421 -21.32188 -21.17627 -20.32255 -19.91232 -18.49526 -18.07483 -17.73181 -17.24627 -16.94258 -16.64999 -16.50924 -16.22477 -15.99156 -15.66831 -15.47655 -15.40639 -15.25753 -14.89407 -14.75639 -14.29443 -14.09073 -14.03533 -13.79777 -13.58056 -13.43901 -13.31249 -12.91229 -12.56682 -12.52012 -12.43900 -12.35730 -12.24696 -12.13216 -11.87471 -11.85294 -11.74130 -11.60954 -11.52950 -11.34843 -11.08970 -10.39035 -10.28250 -10.04387 -9.78568 -9.43602 -8.48817 -5.97757 1.36629 1.40577 1.42216 1.53538 1.72102 2.01478 2.27802 2.61099 2.89102 2.92150 3.17945 3.32320 3.44025 3.68275 3.74677 3.86330 3.90261 3.99459 4.05012 4.13816 4.21630 4.23578 4.27826 4.36366 4.41140 4.46467 4.47309 4.51440 4.53041 4.65025 4.75188 4.77692 4.79391 4.87865 4.96923 5.00640 5.06487 5.19561 5.23662 5.32650 5.37235 5.39188 5.44002 5.84588 5.94504 6.04825 6.26506 6.32013 6.57076 7.04201 7.09920 7.52673 8.07881 8.68576 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.001927 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.043379 B =14530.256766 C =14789.434384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.376 6.376 3 C 0.110 3.890 4 H 0.117 0.883 5 C 0.489 3.511 6 O -0.580 6.580 7 N -0.600 5.600 8 C 0.096 3.904 9 C -0.127 4.127 10 C -0.109 4.109 11 C 0.081 3.919 12 H 0.041 0.959 13 N -0.671 5.671 14 C 0.068 3.932 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.273 1.273 26 C 0.115 3.885 27 C -0.175 4.175 28 C -0.178 4.178 29 C -0.141 4.141 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.342 0.658 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.133 0.867 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.120 0.880 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -12.361 28.374 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.049 3.951 4 H 0.135 0.865 5 C 0.277 3.723 6 O -0.459 6.459 7 N -0.335 5.335 8 C -0.025 4.025 9 C -0.166 4.166 10 C -0.147 4.147 11 C -0.029 4.029 12 H 0.059 0.941 13 N -0.304 5.304 14 C -0.064 4.064 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.209 5.209 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.009 4.009 27 C -0.193 4.193 28 C -0.215 4.215 29 C -0.178 4.178 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.161 0.839 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.151 0.849 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.138 0.862 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.216 -12.499 27.735 30.712 hybrid contribution -1.331 0.003 -1.716 2.172 sum 2.885 -12.495 26.019 29.007 Atomic orbital electron populations 1.23012 0.79505 1.04185 1.00478 1.87960 1.21314 1.25854 1.94245 1.21550 0.96918 0.86712 0.89930 0.86544 1.22003 0.75986 0.81237 0.93031 1.90694 1.52480 1.54868 1.47870 1.48191 1.65058 1.12786 1.07414 1.22295 1.01601 0.89516 0.89106 1.21943 1.00736 0.97058 0.96846 1.21565 1.02329 0.97555 0.93233 1.21875 0.97567 0.93976 0.89464 0.94102 1.60166 1.41379 1.24879 1.03947 1.21552 0.93118 0.98511 0.93223 1.20808 0.84971 0.82821 0.88902 1.90493 1.27229 1.63526 1.69625 1.41925 1.19511 1.42567 1.16926 1.19669 1.05140 1.27071 0.94519 0.90318 1.26066 0.94915 0.96857 1.03509 1.69670 1.09704 1.36342 1.40320 0.84912 0.78368 0.77863 0.77090 1.19702 1.19375 1.19756 1.21521 1.00853 0.94738 0.83764 1.22436 0.95885 1.01497 0.99478 1.22912 1.01035 0.93670 1.03843 1.23063 1.03699 1.01598 0.89411 0.88276 0.91091 0.95452 0.89151 0.86780 0.87312 0.91516 0.91845 0.91079 0.83881 0.92235 0.87462 0.76964 0.91244 0.91698 0.90070 0.84931 0.89366 0.88114 0.86193 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.81 113.37 1.23 1.59 16 2 O -0.38 -7.53 8.24 -129.99 -1.07 -8.60 16 3 C 0.11 1.77 2.04 29.85 0.06 1.83 16 4 H 0.12 1.17 7.08 -2.39 -0.02 1.16 16 5 C 0.49 11.58 7.06 87.66 0.62 12.20 16 6 O -0.58 -19.92 15.92 15.96 0.25 -19.66 16 7 N -0.60 -11.62 2.97 -818.98 -2.43 -14.05 16 8 C 0.10 1.00 4.92 86.36 0.42 1.43 16 9 C -0.13 -1.42 6.08 30.67 0.19 -1.23 16 10 C -0.11 -2.05 5.40 30.62 0.17 -1.88 16 11 C 0.08 1.99 2.64 44.98 0.12 2.11 16 12 H 0.04 1.04 7.80 -2.39 -0.02 1.02 16 13 N -0.67 -21.76 5.93 -495.23 -2.94 -24.70 16 14 C 0.07 2.41 5.97 85.56 0.51 2.92 16 15 C 0.44 21.26 7.82 87.66 0.69 21.95 16 16 O -0.62 -35.20 15.78 -3.06 -0.05 -35.25 16 17 N -0.57 -29.84 5.29 -306.99 -1.62 -31.47 16 18 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 21 N -0.92 -49.94 13.05 21.66 0.28 -49.65 16 22 Si 0.99 43.36 29.55 68.60 2.03 45.38 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C 0.11 2.79 5.70 86.35 0.49 3.29 16 27 C -0.17 -2.07 4.57 -10.79 -0.05 -2.12 16 28 C -0.18 -2.38 9.88 30.62 0.30 -2.08 16 29 C -0.14 -1.11 10.19 30.62 0.31 -0.79 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 0.64 8.09 -2.38 -0.02 0.62 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.62 5.01 -2.38 -0.01 0.61 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.34 12.08 8.06 -89.70 -0.72 11.36 16 40 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 41 H 0.11 3.35 7.42 -2.38 -0.02 3.33 16 42 H 0.40 19.58 7.90 -92.70 -0.73 18.85 16 43 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.06 1.93 7.01 -2.39 -0.02 1.92 16 45 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.13 1.27 6.51 -2.38 -0.02 1.25 16 47 H 0.09 1.55 7.06 -2.39 -0.02 1.53 16 48 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -77.73 400.61 0.29 -77.44 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.49 Total: 40.10 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.33 Total: 20.46 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.71 Total: -119.87 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: -0.87 Total: -63.52 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -77.73 0.29 -77.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207934844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.511 kcal (2) G-P(sol) polarization free energy of solvation -77.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds