Wall clock time and date at job start Sat Apr 11 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00004 * 2 1 4 4 H 1.08997 * 110.35226 * 27.86202 * 3 2 1 5 5 C 1.54291 * 110.47337 * 265.63338 * 3 2 1 6 6 N 1.47899 * 107.08572 * 242.53009 * 5 3 2 7 7 C 1.46897 * 111.00456 * 214.01072 * 6 5 3 8 8 C 1.50700 * 109.47232 * 307.40146 * 7 6 5 9 9 O 1.21287 * 119.99933 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00233 * 179.97438 * 8 7 6 11 11 C 1.37090 * 120.00405 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99778 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00451 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00038 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47325 * 89.99951 * 15 13 11 17 17 H 1.48497 * 109.47494 * 209.99829 * 15 13 11 18 18 H 1.48504 * 109.47207 * 330.00403 * 15 13 11 19 19 C 1.48536 * 105.82365 * 334.53004 * 6 5 3 20 20 C 1.54603 * 110.30785 * 149.99888 * 3 2 1 21 21 H 1.09003 * 110.72175 * 22.33546 * 20 3 2 22 22 N 1.46501 * 110.72435 * 259.23298 * 20 3 2 23 23 C 1.34776 * 120.00021 * 157.44848 * 22 20 3 24 24 O 1.21280 * 119.99795 * 0.02562 * 23 22 20 25 25 C 1.50696 * 119.99917 * 179.97438 * 23 22 20 26 26 C 1.52995 * 109.47185 * 180.02562 * 25 23 22 27 27 C 1.53003 * 109.47289 * 180.02562 * 26 25 23 28 28 C 1.53001 * 117.51964 * 116.28130 * 27 26 25 29 29 C 1.52999 * 60.00190 * 107.47982 * 28 27 26 30 30 H 1.09005 * 109.47254 * 300.00080 * 1 2 3 31 31 H 1.08998 * 109.47210 * 60.00196 * 1 2 3 32 32 H 1.08997 * 109.47096 * 180.02562 * 1 2 3 33 33 H 1.09008 * 110.02532 * 123.11079 * 5 3 2 34 34 H 1.08990 * 109.78698 * 1.82676 * 5 3 2 35 35 H 1.08999 * 109.46950 * 67.39962 * 7 6 5 36 36 H 1.09005 * 109.47350 * 187.39517 * 7 6 5 37 37 H 0.97006 * 120.00050 * 359.97438 * 10 8 7 38 38 H 0.97001 * 120.00151 * 179.97438 * 14 13 11 39 39 H 1.09003 * 110.66094 * 280.76839 * 19 6 5 40 40 H 1.09003 * 110.67032 * 157.63939 * 19 6 5 41 41 H 0.97003 * 119.99685 * 337.44880 * 22 20 3 42 42 H 1.08999 * 109.47154 * 60.00068 * 25 23 22 43 43 H 1.09005 * 109.47097 * 300.00285 * 25 23 22 44 44 H 1.08999 * 109.47504 * 59.99688 * 26 25 23 45 45 H 1.09005 * 109.46851 * 299.99842 * 26 25 23 46 46 H 1.09002 * 115.54973 * 330.57913 * 27 26 25 47 47 H 1.09001 * 117.49733 * 214.97413 * 28 27 26 48 48 H 1.08995 * 117.49577 * 359.97438 * 28 27 26 49 49 H 1.09004 * 117.50150 * 252.51496 * 29 28 27 50 50 H 1.09004 * 117.49681 * 107.48417 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3390 2.0193 0.4776 5 6 2.3302 1.7537 -1.4413 6 7 3.7956 1.9364 -1.5242 7 6 4.1382 3.0372 -2.4346 8 6 3.4586 2.8211 -3.7622 9 8 2.7581 1.8459 -3.9333 10 7 3.6291 3.7116 -4.7594 11 6 3.0113 3.5148 -5.9673 12 1 2.3882 2.6459 -6.1199 13 6 3.1875 4.4325 -6.9956 14 7 3.9461 5.4895 -6.8101 15 14 2.3450 4.1647 -8.6411 16 1 1.0095 4.8140 -8.6251 17 1 3.1711 4.7588 -9.7227 18 1 2.1845 2.7085 -8.8839 19 6 4.2460 2.2309 -0.1398 20 6 3.3755 1.2849 0.7250 21 1 3.7923 0.2778 0.7340 22 7 3.2459 1.8024 2.0894 23 6 4.1549 1.4676 3.0264 24 8 5.0806 0.7382 2.7398 25 6 4.0218 2.0003 4.4297 26 6 5.1742 1.4729 5.2869 27 6 5.0387 2.0133 6.7119 28 6 4.8052 0.9991 7.8334 29 6 6.1626 1.6920 7.6991 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8258 2.6950 -1.6601 34 1 2.0113 0.9858 -2.1459 35 1 3.8041 3.9815 -2.0049 36 1 5.2182 3.0660 -2.5797 37 1 4.1890 4.4918 -4.6225 38 1 4.0694 6.1300 -7.5281 39 1 4.0513 3.2728 0.1146 40 1 5.3038 1.9960 -0.0212 41 1 2.5057 2.3861 2.3184 42 1 3.0730 1.6725 4.8544 43 1 4.0537 3.0897 4.4093 44 1 6.1228 1.8011 4.8621 45 1 5.1427 0.3835 5.3073 46 1 4.5519 2.9844 6.8021 47 1 4.1647 1.3029 8.6614 48 1 4.7476 -0.0534 7.5561 49 1 6.9984 1.0954 7.3334 50 1 6.4152 2.4519 8.4388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212057938.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:12 Heat of formation + Delta-G solvation = -85.702340 kcal Electronic energy + Delta-G solvation = -29369.769677 eV Core-core repulsion = 25204.976653 eV Total energy + Delta-G solvation = -4164.793023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38154 -39.22588 -38.08390 -37.76882 -36.48425 -34.54939 -33.82075 -32.59651 -31.32718 -30.37779 -28.23055 -27.02633 -26.18825 -25.09519 -24.00925 -22.73814 -21.41212 -21.13888 -20.75609 -20.44110 -19.19141 -17.88992 -17.49786 -16.86677 -16.41057 -16.08457 -15.92970 -15.55118 -15.40765 -15.03704 -14.70814 -14.57684 -14.35621 -14.26011 -13.85944 -13.72275 -13.52724 -13.16555 -12.98069 -12.50958 -12.35606 -12.22482 -12.02910 -11.93006 -11.73462 -11.69180 -11.56060 -11.55093 -11.46917 -11.21909 -10.96395 -10.79585 -10.68325 -10.40305 -10.25855 -10.24007 -10.03051 -9.69352 -9.50671 -9.21452 -8.43294 -8.02694 -7.94794 -6.43860 -3.84746 2.46956 2.83599 3.16021 3.25204 3.31303 3.42061 3.68710 3.87432 4.06371 4.21688 4.29207 4.39812 4.49895 4.56818 4.62293 4.70138 4.83952 4.88942 4.96416 5.08300 5.11057 5.20588 5.22565 5.26835 5.27475 5.32275 5.37762 5.42993 5.53531 5.61248 5.64262 5.67343 5.72818 5.77530 5.78406 5.84175 5.94742 6.01839 6.02940 6.22829 6.26787 6.54850 7.05330 7.17216 7.25379 7.28879 7.53273 8.03397 8.04865 8.58912 9.15577 9.51280 10.02711 10.73767 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.001931 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.254685 B =14495.381657 C =15522.284835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.069 3.931 4 H 0.067 0.933 5 C 0.033 3.967 6 N -0.487 5.487 7 C 0.036 3.964 8 C 0.441 3.559 9 O -0.579 6.579 10 N -0.562 5.562 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.027 3.973 20 C 0.144 3.856 21 H 0.116 0.884 22 N -0.724 5.724 23 C 0.513 3.487 24 O -0.534 6.534 25 C -0.137 4.137 26 C -0.074 4.074 27 C -0.155 4.155 28 C -0.182 4.182 29 C -0.181 4.181 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.116 0.884 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.398 0.602 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -2.328 26.478 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.010 3.990 4 H 0.085 0.915 5 C -0.095 4.095 6 N -0.212 5.212 7 C -0.095 4.095 8 C 0.226 3.774 9 O -0.464 6.464 10 N -0.198 5.198 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.102 4.102 20 C 0.039 3.961 21 H 0.133 0.867 22 N -0.376 5.376 23 C 0.300 3.700 24 O -0.409 6.409 25 C -0.177 4.177 26 C -0.112 4.112 27 C -0.173 4.173 28 C -0.219 4.219 29 C -0.218 4.218 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.232 0.768 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.110 0.890 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.754 -4.003 25.790 26.158 hybrid contribution -1.047 1.925 -0.416 2.230 sum -2.801 -2.078 25.375 25.613 Atomic orbital electron populations 1.22804 0.81096 1.02828 0.99908 1.87988 1.19555 1.26544 1.94858 1.23392 0.93715 0.85337 0.96543 0.91503 1.23437 0.88647 1.02424 0.94982 1.64555 1.12282 1.39467 1.04936 1.22136 1.01749 0.92154 0.93501 1.19701 0.86452 0.85576 0.85670 1.90502 1.42929 1.30575 1.82376 1.41847 1.44163 1.22467 1.11331 1.19702 1.26285 1.08802 0.88097 0.87872 1.25266 0.97298 0.95360 0.99989 1.69613 1.38295 1.11976 1.34349 0.85853 0.78742 0.78796 0.80872 1.20462 1.20899 1.19374 1.23617 1.00790 0.97165 0.88669 1.21904 0.94468 0.99933 0.79814 0.86650 1.46045 1.29499 1.51828 1.10261 1.20748 0.81795 0.80514 0.86986 1.90735 1.32072 1.36342 1.81792 1.21658 1.01620 1.02388 0.92003 1.20923 0.97985 1.00995 0.91295 1.22358 1.03631 0.99928 0.91389 1.23057 0.99747 0.98251 1.00872 1.22968 0.92589 1.03740 1.02480 0.94475 0.93512 0.89589 0.93435 0.86636 0.93304 0.88847 0.77454 0.91852 0.93520 0.89055 0.76788 0.88817 0.88805 0.90648 0.90948 0.87758 0.88977 0.88709 0.88656 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.42 16 2 O -0.37 -5.26 10.30 -35.23 -0.36 -5.62 16 3 C 0.07 0.91 3.23 -25.21 -0.08 0.83 16 4 H 0.07 0.69 7.41 -51.93 -0.38 0.31 16 5 C 0.03 0.56 4.90 -2.60 -0.01 0.55 16 6 N -0.49 -8.45 5.26 -231.70 -1.22 -9.67 16 7 C 0.04 0.66 5.48 -4.98 -0.03 0.63 16 8 C 0.44 10.34 7.35 -10.99 -0.08 10.26 16 9 O -0.58 -15.35 13.37 5.55 0.07 -15.28 16 10 N -0.56 -14.14 5.29 -10.97 -0.06 -14.20 16 11 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 15 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 19 C 0.03 0.37 6.24 -1.90 -0.01 0.36 16 20 C 0.14 1.86 3.12 -66.07 -0.21 1.66 16 21 H 0.12 1.82 7.56 -51.93 -0.39 1.43 16 22 N -0.72 -6.96 5.19 -52.00 -0.27 -7.23 16 23 C 0.51 5.43 7.83 -10.99 -0.09 5.34 16 24 O -0.53 -7.97 15.67 5.56 0.09 -7.88 16 25 C -0.14 -0.91 5.66 -27.89 -0.16 -1.07 16 26 C -0.07 -0.57 4.79 -26.73 -0.13 -0.70 16 27 C -0.15 -0.97 5.73 -90.61 -0.52 -1.49 16 28 C -0.18 -1.09 10.18 -26.73 -0.27 -1.37 16 29 C -0.18 -1.12 10.25 -26.73 -0.27 -1.39 16 30 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.81 7.59 -51.92 -0.39 0.42 16 34 H 0.12 2.37 6.57 -51.93 -0.34 2.03 16 35 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.05 0.57 7.85 -51.93 -0.41 0.17 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.40 2.59 8.36 -40.82 -0.34 2.25 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 46 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.58 8.03 -51.93 -0.42 0.17 16 49 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -33.47 409.81 -9.27 -42.74 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -8.39 Total: 11.60 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.00 Total: 7.10 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.82 Total: -54.75 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.20 Total: -28.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.47 -9.27 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212057938.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.963 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds