Wall clock time and date at job start Sat Apr 11 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 110.64453 * 29.29845 * 3 2 1 5 5 C 1.54324 * 110.72025 * 266.15775 * 3 2 1 6 6 N 1.47026 * 107.27213 * 219.44569 * 5 3 2 7 7 C 1.36933 * 125.64838 * 178.90432 * 6 5 3 8 8 H 1.08007 * 120.00221 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00122 * 0.02614 * 7 6 5 10 10 N 1.31623 * 120.00058 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00149 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46842 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47252 * 119.99864 * 11 9 7 14 14 H 1.48499 * 109.46937 * 240.00229 * 11 9 7 15 15 C 1.47420 * 108.70329 * 358.94050 * 6 5 3 16 16 C 1.55125 * 104.94335 * 24.00394 * 15 6 5 17 17 H 1.08993 * 110.93790 * 81.21146 * 16 15 6 18 18 N 1.46505 * 111.16262 * 205.13376 * 16 15 6 19 19 C 1.34772 * 119.99676 * 267.16575 * 18 16 15 20 20 O 1.21281 * 120.00356 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00207 * 179.97438 * 19 18 16 22 22 N 1.46499 * 109.47581 * 180.02562 * 21 19 18 23 23 C 1.34777 * 120.00044 * 180.02562 * 22 21 19 24 24 O 1.21285 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.50701 * 119.99839 * 179.97438 * 23 22 21 26 26 C 1.54264 * 110.03169 * 297.16176 * 25 23 22 27 27 C 1.54881 * 104.19683 * 217.10762 * 26 25 23 28 28 C 1.54892 * 102.75073 * 37.94086 * 27 26 25 29 29 C 1.53874 * 110.02919 * 179.97438 * 25 23 22 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.88161 * 338.86283 * 5 3 2 34 34 H 1.09003 * 109.88530 * 100.03096 * 5 3 2 35 35 H 0.96994 * 119.99964 * 180.02562 * 10 9 7 36 36 H 1.08997 * 110.36876 * 142.96438 * 15 6 5 37 37 H 1.09005 * 110.36834 * 265.18397 * 15 6 5 38 38 H 0.97001 * 120.00264 * 87.16708 * 18 16 15 39 39 H 1.09003 * 109.47279 * 300.00985 * 21 19 18 40 40 H 1.09009 * 109.46915 * 60.00113 * 21 19 18 41 41 H 0.96998 * 119.99983 * 359.97438 * 22 21 19 42 42 H 1.09001 * 110.01377 * 58.60854 * 25 23 22 43 43 H 1.09001 * 110.48607 * 335.78909 * 26 25 23 44 44 H 1.09002 * 110.48172 * 98.42917 * 26 25 23 45 45 H 1.09002 * 110.75685 * 279.63140 * 27 26 25 46 46 H 1.08999 * 110.76001 * 156.26329 * 27 26 25 47 47 H 1.08995 * 110.48760 * 203.37593 * 28 27 26 48 48 H 1.09003 * 110.59456 * 80.79197 * 28 27 26 49 49 H 1.08998 * 110.03312 * 238.56511 * 29 25 23 50 50 H 1.09001 * 110.03395 * 359.95217 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3538 2.0183 0.4992 5 6 2.3206 1.7650 -1.4402 6 7 3.6104 2.4699 -1.4051 7 6 4.2515 3.0152 -2.4852 8 1 5.2002 3.5146 -2.3546 9 6 3.6821 2.9261 -3.7480 10 7 2.5262 2.3171 -3.9073 11 14 4.5564 3.6707 -5.2214 12 1 5.8292 4.2944 -4.7785 13 1 4.8458 2.6060 -6.2153 14 1 3.6888 4.7041 -5.8415 15 6 4.0995 2.4916 -0.0146 16 6 3.4088 1.2837 0.6714 17 1 3.9350 0.3558 0.4479 18 7 3.3001 1.4882 2.1180 19 6 4.2624 1.0223 2.9385 20 8 5.2186 0.4343 2.4794 21 6 4.1509 1.2331 4.4266 22 7 5.3129 0.6391 5.0924 23 6 5.4282 0.7059 6.4336 24 8 4.5702 1.2581 7.0892 25 6 6.6232 0.0944 7.1185 26 6 6.6450 -1.4299 6.8822 27 6 7.1619 -2.0143 8.2201 28 6 6.4861 -1.1034 9.2749 29 6 6.5224 0.3025 8.6397 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.3891 0.8992 -2.0988 34 1 1.5391 2.4392 -1.7908 35 1 2.1285 2.2546 -4.7898 36 1 5.1828 2.3735 0.0084 37 1 3.8094 3.4212 0.4752 38 1 2.5355 1.9588 2.4852 39 1 4.1165 2.3013 4.6407 40 1 3.2402 0.7595 4.7934 41 1 5.9989 0.1971 4.5681 42 1 7.5409 0.5448 6.7403 43 1 5.6413 -1.7971 6.6679 44 1 7.3255 -1.6800 6.0683 45 1 8.2474 -1.9369 8.2817 46 1 6.8400 -3.0488 8.3399 47 1 7.0506 -1.1154 10.2072 48 1 5.4568 -1.4170 9.4492 49 1 7.3917 0.8527 8.9997 50 1 5.6096 0.8465 8.8825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212311061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:18 Heat of formation + Delta-G solvation = -98.885276 kcal Electronic energy + Delta-G solvation = -29701.804902 eV Core-core repulsion = 25536.440223 eV Total energy + Delta-G solvation = -4165.364678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58539 -39.71163 -38.27069 -37.31888 -35.98346 -34.67461 -34.17763 -31.88974 -30.23767 -29.04817 -28.92398 -27.92443 -26.57793 -26.15914 -24.19646 -22.23686 -21.07693 -20.87448 -20.60153 -20.16590 -19.82154 -18.09591 -17.25662 -16.79583 -16.54915 -16.11947 -15.99806 -15.66177 -15.44736 -15.13947 -14.71625 -14.52086 -14.35426 -14.18488 -13.88906 -13.63279 -13.34107 -13.25384 -12.97653 -12.69109 -12.28625 -12.02818 -11.95113 -11.67774 -11.62285 -11.44804 -11.43112 -11.29883 -11.11729 -11.05568 -10.86390 -10.83530 -10.79939 -10.20136 -10.06576 -10.01551 -9.95929 -9.84527 -9.39939 -9.21905 -8.85347 -8.64559 -6.94026 -5.77778 -3.13124 2.38749 2.55325 2.66678 3.33374 3.37769 3.43377 3.45725 4.08146 4.12836 4.24482 4.39519 4.45688 4.58463 4.84548 5.01969 5.04688 5.10785 5.11394 5.13371 5.19347 5.28271 5.32820 5.33757 5.44031 5.51084 5.53405 5.58446 5.59711 5.65010 5.75496 5.78933 5.81261 5.88549 5.94844 5.97311 6.00628 6.08085 6.14286 6.40049 6.53650 6.74601 7.19751 7.26976 7.42280 7.48328 7.66759 7.81204 7.97530 8.12736 8.17648 9.12900 9.72943 10.35457 11.33662 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.002093 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.289520 B =13376.449210 C =14224.534646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.063 0.937 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.108 0.892 18 N -0.709 5.709 19 C 0.509 3.491 20 O -0.536 6.536 21 C 0.099 3.901 22 N -0.716 5.716 23 C 0.522 3.478 24 O -0.543 6.543 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.119 4.119 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.253 0.747 36 H 0.050 0.950 37 H 0.023 0.977 38 H 0.400 0.600 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.413 0.587 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -5.961 22.941 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.004 4.004 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.027 3.973 17 H 0.126 0.874 18 N -0.359 5.359 19 C 0.294 3.706 20 O -0.413 6.413 21 C -0.028 4.028 22 N -0.371 5.371 23 C 0.308 3.692 24 O -0.420 6.420 25 C -0.134 4.134 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.157 4.157 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.234 0.766 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.251 0.749 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.703 -6.132 22.811 23.775 hybrid contribution -0.015 0.706 -1.064 1.277 sum 2.688 -5.426 21.747 22.575 Atomic orbital electron populations 1.22713 0.81632 1.02088 0.99832 1.87906 1.19180 1.27501 1.95065 1.23857 0.92719 0.84174 0.99653 0.91883 1.21584 0.88429 0.97124 0.88987 1.44258 1.20797 1.66132 1.01597 1.19114 1.02466 1.29181 0.84906 0.90068 1.24833 0.97305 1.00669 0.97570 1.69944 1.17716 1.47349 1.21914 0.85997 0.78580 0.78287 0.82603 1.20412 1.21641 1.21729 1.21849 0.97577 0.93659 0.86563 1.22473 0.96553 1.01322 0.76977 0.87361 1.45834 1.24459 1.58076 1.07528 1.20410 0.82952 0.78851 0.88384 1.90715 1.31635 1.41740 1.77182 1.21074 0.91007 1.00978 0.89782 1.45730 1.25073 1.59143 1.07127 1.20623 0.87968 0.79069 0.81531 1.90670 1.42537 1.44209 1.64568 1.21948 0.96810 0.97297 0.97306 1.22378 1.02215 0.92258 0.98602 1.22503 1.00344 0.99123 0.94174 1.22376 1.00917 0.94764 0.98161 1.22181 1.03857 0.97893 0.91763 0.93547 0.94805 0.90228 0.91910 0.93295 0.93662 0.93170 0.95891 0.76617 0.88321 0.88439 0.74862 0.88158 0.91047 0.90554 0.91164 0.91266 0.91524 0.91522 0.91393 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.86 101.05 1.10 1.57 16 2 O -0.38 -6.74 10.43 -35.23 -0.37 -7.11 16 3 C 0.06 1.00 3.06 -24.89 -0.08 0.92 16 4 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 5 C 0.16 3.89 5.15 -3.06 -0.02 3.88 16 6 N -0.60 -15.11 3.40 -169.93 -0.58 -15.69 16 7 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -26.66 10.31 55.49 0.57 -26.09 16 11 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 C 0.13 2.69 6.94 -2.41 -0.02 2.68 16 16 C 0.13 2.35 3.16 -65.66 -0.21 2.14 16 17 H 0.11 2.22 7.54 -51.93 -0.39 1.82 16 18 N -0.71 -9.44 5.21 -51.62 -0.27 -9.71 16 19 C 0.51 6.81 7.90 -10.99 -0.09 6.72 16 20 O -0.54 -9.05 15.31 5.56 0.09 -8.96 16 21 C 0.10 1.03 6.15 -5.19 -0.03 1.00 16 22 N -0.72 -7.51 5.47 -61.47 -0.34 -7.85 16 23 C 0.52 5.66 6.99 -10.98 -0.08 5.59 16 24 O -0.54 -7.53 15.21 5.55 0.08 -7.44 16 25 C -0.11 -0.91 3.30 -90.65 -0.30 -1.21 16 26 C -0.12 -0.82 6.31 -25.08 -0.16 -0.98 16 27 C -0.12 -0.76 6.91 -24.74 -0.17 -0.93 16 28 C -0.12 -0.84 6.83 -25.05 -0.17 -1.01 16 29 C -0.12 -0.95 6.40 -25.59 -0.16 -1.11 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.70 7.29 -51.93 -0.38 1.33 16 34 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 4.09 8.57 -40.82 -0.35 3.74 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 41 H 0.41 4.25 7.44 -40.82 -0.30 3.94 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.91 6.39 -51.93 -0.33 0.57 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -33.61 402.33 -8.81 -42.42 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.42 Total: 4.97 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -0.63 Total: 12.48 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.61 Total: -59.34 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.20 Total: -23.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.61 -8.81 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212311061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.466 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds