Wall clock time and date at job start Sat Apr 11 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 110.64453 * 29.29845 * 3 2 1 5 5 C 1.54324 * 110.72025 * 266.15775 * 3 2 1 6 6 N 1.47026 * 107.27213 * 219.44569 * 5 3 2 7 7 C 1.36933 * 125.64838 * 178.90432 * 6 5 3 8 8 H 1.08007 * 120.00221 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00122 * 0.02614 * 7 6 5 10 10 N 1.31623 * 120.00058 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00149 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46842 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47252 * 119.99864 * 11 9 7 14 14 H 1.48499 * 109.46937 * 240.00229 * 11 9 7 15 15 C 1.47420 * 108.70329 * 358.94050 * 6 5 3 16 16 C 1.55125 * 104.94335 * 24.00394 * 15 6 5 17 17 H 1.08993 * 110.93790 * 81.21146 * 16 15 6 18 18 N 1.46505 * 111.16262 * 205.13376 * 16 15 6 19 19 C 1.34772 * 119.99676 * 267.16575 * 18 16 15 20 20 O 1.21281 * 120.00356 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00207 * 179.97438 * 19 18 16 22 22 N 1.46499 * 109.47581 * 180.02562 * 21 19 18 23 23 C 1.34777 * 120.00044 * 180.02562 * 22 21 19 24 24 O 1.21285 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.50701 * 119.99839 * 179.97438 * 23 22 21 26 26 C 1.54264 * 110.03169 * 297.16176 * 25 23 22 27 27 C 1.54881 * 104.19683 * 217.10762 * 26 25 23 28 28 C 1.54892 * 102.75073 * 37.94086 * 27 26 25 29 29 C 1.53874 * 110.02919 * 179.97438 * 25 23 22 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.88161 * 338.86283 * 5 3 2 34 34 H 1.09003 * 109.88530 * 100.03096 * 5 3 2 35 35 H 0.96994 * 119.99964 * 180.02562 * 10 9 7 36 36 H 1.08997 * 110.36876 * 142.96438 * 15 6 5 37 37 H 1.09005 * 110.36834 * 265.18397 * 15 6 5 38 38 H 0.97001 * 120.00264 * 87.16708 * 18 16 15 39 39 H 1.09003 * 109.47279 * 300.00985 * 21 19 18 40 40 H 1.09009 * 109.46915 * 60.00113 * 21 19 18 41 41 H 0.96998 * 119.99983 * 359.97438 * 22 21 19 42 42 H 1.09001 * 110.01377 * 58.60854 * 25 23 22 43 43 H 1.09001 * 110.48607 * 335.78909 * 26 25 23 44 44 H 1.09002 * 110.48172 * 98.42917 * 26 25 23 45 45 H 1.09002 * 110.75685 * 279.63140 * 27 26 25 46 46 H 1.08999 * 110.76001 * 156.26329 * 27 26 25 47 47 H 1.08995 * 110.48760 * 203.37593 * 28 27 26 48 48 H 1.09003 * 110.59456 * 80.79197 * 28 27 26 49 49 H 1.08998 * 110.03312 * 238.56511 * 29 25 23 50 50 H 1.09001 * 110.03395 * 359.95217 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3538 2.0183 0.4992 5 6 2.3206 1.7650 -1.4402 6 7 3.6104 2.4699 -1.4051 7 6 4.2515 3.0152 -2.4852 8 1 5.2002 3.5146 -2.3546 9 6 3.6821 2.9261 -3.7480 10 7 2.5262 2.3171 -3.9073 11 14 4.5564 3.6707 -5.2214 12 1 5.8292 4.2944 -4.7785 13 1 4.8458 2.6060 -6.2153 14 1 3.6888 4.7041 -5.8415 15 6 4.0995 2.4916 -0.0146 16 6 3.4088 1.2837 0.6714 17 1 3.9350 0.3558 0.4479 18 7 3.3001 1.4882 2.1180 19 6 4.2624 1.0223 2.9385 20 8 5.2186 0.4343 2.4794 21 6 4.1509 1.2331 4.4266 22 7 5.3129 0.6391 5.0924 23 6 5.4282 0.7059 6.4336 24 8 4.5702 1.2581 7.0892 25 6 6.6232 0.0944 7.1185 26 6 6.6450 -1.4299 6.8822 27 6 7.1619 -2.0143 8.2201 28 6 6.4861 -1.1034 9.2749 29 6 6.5224 0.3025 8.6397 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.3891 0.8992 -2.0988 34 1 1.5391 2.4392 -1.7908 35 1 2.1285 2.2546 -4.7898 36 1 5.1828 2.3735 0.0084 37 1 3.8094 3.4212 0.4752 38 1 2.5355 1.9588 2.4852 39 1 4.1165 2.3013 4.6407 40 1 3.2402 0.7595 4.7934 41 1 5.9989 0.1971 4.5681 42 1 7.5409 0.5448 6.7403 43 1 5.6413 -1.7971 6.6679 44 1 7.3255 -1.6800 6.0683 45 1 8.2474 -1.9369 8.2817 46 1 6.8400 -3.0488 8.3399 47 1 7.0506 -1.1154 10.2072 48 1 5.4568 -1.4170 9.4492 49 1 7.3917 0.8527 8.9997 50 1 5.6096 0.8465 8.8825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212311061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:17 Heat of formation + Delta-G solvation = -123.982423 kcal Electronic energy + Delta-G solvation = -29702.893196 eV Core-core repulsion = 25536.440223 eV Total energy + Delta-G solvation = -4166.452972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53525 -40.83376 -39.66428 -38.00367 -37.51539 -35.80094 -35.46798 -33.73555 -31.15754 -30.46951 -29.56590 -29.22081 -27.90365 -27.49590 -25.92825 -23.11018 -22.34835 -22.09181 -21.58444 -21.50301 -20.66211 -19.23382 -18.76096 -18.06409 -17.65012 -17.21054 -17.14447 -16.88336 -16.46075 -16.24830 -15.91067 -15.82090 -15.65596 -15.38390 -15.05161 -14.83071 -14.46727 -14.34691 -14.19421 -14.01256 -13.67997 -13.61820 -13.16284 -12.99319 -12.80050 -12.67667 -12.60202 -12.32599 -12.25848 -12.04305 -12.01576 -11.92980 -11.88408 -11.65377 -11.64546 -11.39805 -11.18291 -10.86749 -10.79463 -10.62350 -10.28156 -10.12294 -8.97865 -7.88755 -5.26781 1.43147 1.45741 1.46693 1.56893 1.58374 1.67350 2.35486 2.46159 2.76148 3.30894 3.46257 3.51318 3.54474 3.67941 3.80979 3.86047 3.91613 4.09495 4.22625 4.30890 4.37311 4.38042 4.43627 4.49056 4.55687 4.58806 4.59179 4.64659 4.70501 4.81689 4.82060 4.87543 4.93980 4.99295 5.10183 5.20831 5.25447 5.26895 5.30606 5.36086 5.42442 5.45051 5.48591 5.65340 6.12553 6.30015 6.39692 6.44449 7.03435 7.08414 7.14341 7.68874 8.30822 9.20870 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.002093 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.289520 B =13376.449210 C =14224.534646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.074 3.926 4 H 0.097 0.903 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.244 4.244 8 H 0.084 0.916 9 C -0.064 4.064 10 N -0.949 5.949 11 Si 0.981 3.019 12 H -0.265 1.265 13 H -0.293 1.293 14 H -0.289 1.289 15 C 0.131 3.869 16 C 0.152 3.848 17 H 0.080 0.920 18 N -0.695 5.695 19 C 0.513 3.487 20 O -0.571 6.571 21 C 0.107 3.893 22 N -0.715 5.715 23 C 0.521 3.479 24 O -0.575 6.575 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.120 4.120 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.017 0.983 34 H 0.021 0.979 35 H 0.248 0.752 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.419 0.581 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.415 0.585 42 H 0.117 0.883 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -5.809 24.918 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.015 3.985 4 H 0.115 0.885 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.372 4.372 8 H 0.102 0.898 9 C -0.257 4.257 10 N -0.598 5.598 11 Si 0.809 3.191 12 H -0.190 1.190 13 H -0.220 1.220 14 H -0.216 1.216 15 C 0.004 3.996 16 C 0.045 3.955 17 H 0.098 0.902 18 N -0.347 5.347 19 C 0.300 3.700 20 O -0.450 6.450 21 C -0.020 4.020 22 N -0.370 5.370 23 C 0.309 3.691 24 O -0.455 6.455 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.162 4.162 29 C -0.158 4.158 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.257 0.743 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.254 0.746 42 H 0.135 0.865 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.156 -5.972 24.836 25.738 hybrid contribution -0.172 0.633 -1.650 1.775 sum 2.984 -5.339 23.187 23.980 Atomic orbital electron populations 1.22980 0.79364 1.03856 1.00747 1.87889 1.21703 1.27003 1.94944 1.23525 0.93633 0.85267 0.96056 0.88488 1.21307 0.87297 0.94601 0.92013 1.44526 1.21464 1.66010 1.02989 1.19479 1.02721 1.28962 0.86070 0.89795 1.25685 0.98206 1.01581 1.00269 1.70163 1.19036 1.48592 1.22000 0.84977 0.77950 0.77233 0.78950 1.18980 1.22011 1.21584 1.21977 0.97127 0.95661 0.84842 1.21863 0.95519 0.98678 0.79411 0.90205 1.45553 1.25422 1.58308 1.05426 1.20883 0.81975 0.77646 0.89465 1.90711 1.33091 1.43224 1.78015 1.21082 0.91704 1.02127 0.87090 1.45787 1.25084 1.58919 1.07173 1.21084 0.88274 0.78421 0.81325 1.90659 1.43909 1.45786 1.65155 1.22033 0.96148 0.97892 0.97106 1.22389 1.01902 0.91436 0.99640 1.22509 1.00988 0.99156 0.93090 1.22379 1.00720 0.94138 0.98945 1.22180 1.03208 0.98515 0.91878 0.94759 0.91652 0.88190 0.96489 0.96048 0.94233 0.94330 0.93833 0.74275 0.86762 0.86829 0.74645 0.86464 0.92257 0.89480 0.89917 0.90698 0.90243 0.92507 0.90103 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.86 113.37 1.23 1.91 16 2 O -0.40 -13.79 10.43 -148.98 -1.55 -15.35 16 3 C 0.07 2.65 3.06 31.78 0.10 2.75 16 4 H 0.10 2.81 7.71 -2.39 -0.02 2.79 16 5 C 0.17 8.49 5.15 86.73 0.45 8.94 16 6 N -0.62 -31.98 3.40 -691.55 -2.35 -34.33 16 7 C -0.24 -13.70 10.28 84.03 0.86 -12.84 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 10 N -0.95 -56.83 10.31 21.65 0.22 -56.61 16 11 Si 0.98 45.80 29.55 68.60 2.03 47.82 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 15 C 0.13 5.33 6.94 86.93 0.60 5.93 16 16 C 0.15 5.30 3.16 46.46 0.15 5.45 16 17 H 0.08 3.31 7.54 -2.39 -0.02 3.29 16 18 N -0.70 -16.99 5.21 -435.61 -2.27 -19.26 16 19 C 0.51 12.82 7.90 87.66 0.69 13.51 16 20 O -0.57 -18.84 15.31 -3.03 -0.05 -18.88 16 21 C 0.11 1.99 6.15 85.63 0.53 2.51 16 22 N -0.72 -13.86 5.47 -466.77 -2.56 -16.41 16 23 C 0.52 10.63 6.99 87.66 0.61 11.25 16 24 O -0.58 -15.44 15.21 -3.05 -0.05 -15.49 16 25 C -0.11 -1.61 3.30 -10.82 -0.04 -1.65 16 26 C -0.12 -1.44 6.31 31.67 0.20 -1.24 16 27 C -0.12 -1.22 6.91 31.88 0.22 -1.00 16 28 C -0.12 -1.49 6.83 31.69 0.22 -1.27 16 29 C -0.12 -1.76 6.40 31.33 0.20 -1.56 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.27 8.11 -2.39 -0.02 1.26 16 32 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.02 0.97 7.29 -2.39 -0.02 0.95 16 34 H 0.02 1.14 7.51 -2.39 -0.02 1.12 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.42 7.12 8.57 -92.71 -0.79 6.33 16 39 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.42 7.96 7.44 -92.71 -0.69 7.27 16 42 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.06 0.88 7.85 -2.39 -0.02 0.86 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.07 1.32 6.39 -2.39 -0.02 1.30 16 Total: -1.00 -75.89 402.33 -0.61 -76.50 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.53 Total: 22.50 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 6.49 Total: 29.51 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -6.95 Total: -126.61 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.65 Total: -49.72 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.89 -0.61 -76.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212311061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.481 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds