Wall clock time and date at job start Sat Apr 11 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00488 * 2 1 4 4 H 1.09008 * 110.91231 * 32.45042 * 3 2 1 5 5 C 1.54908 * 111.00574 * 268.54918 * 3 2 1 6 6 N 1.47425 * 104.92961 * 204.85979 * 5 3 2 7 7 C 1.36938 * 125.65179 * 204.15650 * 6 5 3 8 8 H 1.07995 * 120.00281 * 180.02562 * 7 6 5 9 9 C 1.38810 * 119.99650 * 0.02562 * 7 6 5 10 10 N 1.31621 * 120.00025 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46993 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47464 * 119.99742 * 11 9 7 14 14 H 1.48496 * 109.47378 * 240.00268 * 11 9 7 15 15 C 1.47290 * 108.55742 * 24.15407 * 6 5 3 16 16 C 1.54325 * 107.30599 * 358.92448 * 15 6 5 17 17 H 1.08997 * 110.72163 * 96.18354 * 16 15 6 18 18 N 1.46497 * 110.72131 * 219.45483 * 16 15 6 19 19 C 1.34781 * 119.99953 * 268.52482 * 18 16 15 20 20 O 1.21281 * 120.00226 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99963 * 180.02562 * 19 18 16 22 22 C 1.52996 * 109.47270 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47682 * 180.02562 * 22 21 19 24 24 N 1.46494 * 109.47777 * 179.97438 * 23 22 21 25 25 C 1.34780 * 120.00488 * 179.97438 * 24 23 22 26 26 O 1.21280 * 119.99429 * 359.97438 * 25 24 23 27 27 C 1.50700 * 120.00084 * 180.02562 * 25 24 23 28 28 C 1.53002 * 117.49464 * 248.62013 * 27 25 24 29 29 C 1.52998 * 59.99997 * 252.51136 * 28 27 25 30 30 H 1.09001 * 109.46698 * 300.00412 * 1 2 3 31 31 H 1.09002 * 109.46834 * 59.99448 * 1 2 3 32 32 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 33 33 H 1.09002 * 110.36632 * 323.75375 * 5 3 2 34 34 H 1.08995 * 110.36781 * 85.96612 * 5 3 2 35 35 H 0.97001 * 119.99611 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.85762 * 239.50064 * 15 6 5 37 37 H 1.08999 * 109.87327 * 118.35916 * 15 6 5 38 38 H 0.96996 * 120.00123 * 88.52155 * 18 16 15 39 39 H 1.09005 * 109.47068 * 299.99881 * 21 19 18 40 40 H 1.09005 * 109.47143 * 59.99839 * 21 19 18 41 41 H 1.09005 * 109.47029 * 299.99968 * 22 21 19 42 42 H 1.09006 * 109.47279 * 59.99360 * 22 21 19 43 43 H 1.09005 * 109.46835 * 300.00053 * 23 22 21 44 44 H 1.09006 * 109.47314 * 59.99347 * 23 22 21 45 45 H 0.97005 * 119.99562 * 0.02562 * 24 23 22 46 46 H 1.08999 * 115.55240 * 34.32559 * 27 25 24 47 47 H 1.09004 * 117.50064 * 0.02562 * 28 27 25 48 48 H 1.09007 * 117.49721 * 145.01920 * 28 27 25 49 49 H 1.09000 * 117.49723 * 252.51180 * 29 28 27 50 50 H 1.08997 * 117.49702 * 107.49431 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3837 2.0104 0.5464 5 6 2.2697 1.7977 -1.4457 6 7 3.3603 2.7819 -1.3218 7 6 3.6202 3.8000 -2.2000 8 1 4.4471 4.4708 -2.0196 9 6 2.8208 3.9697 -3.3220 10 7 1.8128 3.1524 -3.5416 11 14 3.1757 5.3580 -4.5204 12 1 4.3540 6.1294 -4.0493 13 1 3.4588 4.7921 -5.8639 14 1 1.9962 6.2566 -4.6003 15 6 4.1219 2.4860 -0.0963 16 6 3.4486 1.2737 0.5810 17 1 3.9551 0.3483 0.3068 18 7 3.4236 1.4408 2.0362 19 6 4.4342 0.9599 2.7873 20 8 5.3640 0.3884 2.2585 21 6 4.4081 1.1313 4.2843 22 6 5.6622 0.4997 4.8918 23 6 5.6355 0.6731 6.4117 24 7 6.8360 0.0679 6.9935 25 6 7.0288 0.1007 8.3271 26 8 6.2084 0.6318 9.0453 27 6 8.2641 -0.5214 8.9254 28 6 8.0804 -1.7819 9.7731 29 6 8.4248 -0.4514 10.4454 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.5788 0.9667 -2.0797 34 1 1.3757 2.2713 -1.8513 35 1 1.2544 3.2708 -4.3259 36 1 4.0957 3.3462 0.5727 37 1 5.1535 2.2429 -0.3507 38 1 2.6797 1.8975 2.4592 39 1 4.3812 2.1934 4.5280 40 1 3.5224 0.6427 4.6906 41 1 5.6887 -0.5624 4.6481 42 1 6.5482 0.9878 4.4855 43 1 5.6088 1.7351 6.6558 44 1 4.7496 0.1847 6.8177 45 1 7.4927 -0.3559 6.4189 46 1 9.1675 -0.4490 8.3199 47 1 7.0662 -2.1614 9.8975 48 1 8.8631 -2.5391 9.7251 49 1 9.4341 -0.3333 10.8397 50 1 7.6372 0.0446 11.0125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212365646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:21 Heat of formation + Delta-G solvation = -70.380852 kcal Electronic energy + Delta-G solvation = -28852.946509 eV Core-core repulsion = 24688.817876 eV Total energy + Delta-G solvation = -4164.128634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29120 -39.79089 -38.19563 -36.85877 -35.97678 -35.62745 -34.06506 -32.94687 -31.75773 -28.99524 -27.98010 -26.79395 -26.12886 -24.65548 -23.92169 -22.86949 -22.12539 -20.83887 -20.59373 -20.13925 -19.80885 -17.81436 -17.49581 -16.87158 -16.52191 -16.28878 -16.02438 -15.59458 -15.47047 -14.99054 -14.93081 -14.53801 -14.32457 -14.27681 -13.94122 -13.64163 -13.23649 -12.99161 -12.94209 -12.51908 -12.43685 -12.24661 -11.99914 -11.85502 -11.75805 -11.45219 -11.32313 -11.17739 -11.07705 -11.04181 -10.95528 -10.87025 -10.82534 -10.21918 -10.19335 -9.92502 -9.83912 -9.74672 -9.41922 -9.10177 -8.74170 -8.69532 -6.93553 -5.72887 -3.16049 2.14522 2.72218 2.76421 3.31363 3.36342 3.41992 3.42982 3.44506 4.09683 4.25100 4.35236 4.43540 4.44616 4.53120 4.68866 4.72454 4.72762 5.06931 5.14659 5.19341 5.23117 5.28856 5.37213 5.40295 5.41125 5.49035 5.49171 5.59441 5.66003 5.66628 5.68090 5.81294 5.83466 5.91611 5.94876 6.04917 6.09828 6.18410 6.44963 6.63476 6.86591 7.14135 7.22268 7.52070 7.65029 7.70267 7.76959 7.88043 8.23030 8.37484 9.12549 9.72766 10.35504 11.30834 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.001738 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.163332 B =16103.091425 C =17091.876925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.139 3.861 6 N -0.601 5.601 7 C -0.222 4.222 8 H 0.081 0.919 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.130 3.870 16 C 0.136 3.864 17 H 0.103 0.897 18 N -0.716 5.716 19 C 0.513 3.487 20 O -0.542 6.542 21 C -0.137 4.137 22 C -0.116 4.116 23 C 0.118 3.882 24 N -0.725 5.725 25 C 0.541 3.459 26 O -0.543 6.543 27 C -0.197 4.197 28 C -0.153 4.153 29 C -0.148 4.148 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.112 0.888 35 H 0.253 0.747 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.398 0.602 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.404 0.596 46 H 0.125 0.875 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -8.286 23.104 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.013 3.987 6 N -0.329 5.329 7 C -0.350 4.350 8 H 0.099 0.901 9 C -0.206 4.206 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.003 3.997 16 C 0.031 3.969 17 H 0.121 0.879 18 N -0.366 5.366 19 C 0.299 3.701 20 O -0.419 6.419 21 C -0.178 4.178 22 C -0.154 4.154 23 C -0.006 4.006 24 N -0.377 5.377 25 C 0.328 3.672 26 O -0.420 6.420 27 C -0.218 4.218 28 C -0.190 4.190 29 C -0.185 4.185 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.130 0.870 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.232 0.768 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.238 0.762 46 H 0.143 0.857 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.006 -8.388 23.024 25.229 hybrid contribution -0.092 0.950 -0.910 1.319 sum 5.913 -7.439 22.113 24.069 Atomic orbital electron populations 1.22695 0.81555 1.01892 1.00039 1.87840 1.19273 1.27719 1.95141 1.24025 0.92216 0.83768 1.00521 0.91624 1.22329 0.95395 0.91902 0.89080 1.44371 1.31825 1.33119 1.23548 1.19142 1.11108 1.04120 1.00621 0.90136 1.24809 0.98034 0.99354 0.98433 1.69763 1.19920 1.38607 1.28831 0.85954 0.77403 0.81037 0.80835 1.20464 1.21650 1.21710 1.21658 0.95188 0.93644 0.89221 1.22115 0.96403 1.00332 0.78005 0.87906 1.46016 1.23944 1.59004 1.07653 1.20533 0.82178 0.78256 0.89168 1.90709 1.34415 1.42310 1.74447 1.21542 1.00181 1.03585 0.92483 1.21510 0.98455 1.02839 0.92597 1.21410 0.87503 0.98735 0.92921 1.45925 1.24847 1.59642 1.07239 1.19679 0.86558 0.78970 0.82004 1.90703 1.45941 1.44843 1.60509 1.22214 0.98517 1.05017 0.96083 1.22949 1.03732 0.90673 1.01658 1.22957 1.03749 0.99856 0.91976 0.94810 0.93407 0.90346 0.95601 0.87007 0.93647 0.95216 0.94883 0.76824 0.88524 0.88633 0.90321 0.90251 0.91231 0.91317 0.76166 0.85745 0.88223 0.87689 0.87858 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.89 101.05 1.10 1.60 16 2 O -0.38 -6.88 10.51 -35.23 -0.37 -7.25 16 3 C 0.05 1.02 3.12 -24.58 -0.08 0.94 16 4 H 0.07 1.14 7.77 -51.92 -0.40 0.74 16 5 C 0.14 3.33 5.62 -2.53 -0.01 3.32 16 6 N -0.60 -15.25 3.40 -169.86 -0.58 -15.83 16 7 C -0.22 -6.11 10.28 -15.06 -0.15 -6.26 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 10 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 11 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 15 C 0.13 2.77 7.01 -2.92 -0.02 2.75 16 16 C 0.14 2.51 3.05 -66.10 -0.20 2.30 16 17 H 0.10 2.11 7.55 -51.93 -0.39 1.72 16 18 N -0.72 -10.06 5.10 -52.03 -0.27 -10.33 16 19 C 0.51 7.02 7.83 -10.98 -0.09 6.94 16 20 O -0.54 -9.61 15.63 5.56 0.09 -9.53 16 21 C -0.14 -1.20 5.70 -27.89 -0.16 -1.36 16 22 C -0.12 -0.98 4.62 -26.73 -0.12 -1.10 16 23 C 0.12 0.95 5.67 -4.05 -0.02 0.93 16 24 N -0.73 -5.63 5.56 -60.29 -0.33 -5.96 16 25 C 0.54 5.19 7.61 -10.98 -0.08 5.11 16 26 O -0.54 -7.31 16.26 5.56 0.09 -7.22 16 27 C -0.20 -1.30 6.19 -91.77 -0.57 -1.87 16 28 C -0.15 -0.85 10.23 -26.73 -0.27 -1.12 16 29 C -0.15 -0.92 10.04 -26.73 -0.27 -1.19 16 30 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.11 2.96 5.86 -51.93 -0.30 2.65 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 4.44 8.56 -40.82 -0.35 4.09 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.40 2.24 8.47 -40.82 -0.35 1.89 16 46 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 412.85 15.07 6.22 6.22 Total: -1.00 -34.99 412.85 -9.15 -44.14 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.49 Total: 4.18 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.05 Total: 10.59 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.62 Total: -57.88 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.19 Total: -24.00 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.99 -9.15 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212365646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.240 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds