Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00056 * 2 1 4 4 H 1.09009 * 110.77706 * 26.76568 * 3 2 1 5 5 C 1.54320 * 110.72564 * 263.52303 * 3 2 1 6 6 N 1.47018 * 107.27376 * 219.44009 * 5 3 2 7 7 C 1.36937 * 125.65042 * 178.89444 * 6 5 3 8 8 H 1.07998 * 120.00217 * 174.88719 * 7 6 5 9 9 C 1.38809 * 119.99837 * 354.88314 * 7 6 5 10 10 N 1.31622 * 120.00268 * 7.06544 * 9 7 6 11 11 Si 1.86803 * 120.00133 * 187.06348 * 9 7 6 12 12 H 1.48505 * 109.47040 * 94.98959 * 11 9 7 13 13 H 1.48497 * 109.47400 * 214.98617 * 11 9 7 14 14 H 1.48500 * 109.46911 * 334.99175 * 11 9 7 15 15 C 1.47430 * 108.70365 * 358.94471 * 6 5 3 16 16 C 1.54902 * 104.83046 * 24.12301 * 15 6 5 17 17 H 1.09009 * 111.03886 * 81.08484 * 16 15 6 18 18 N 1.46498 * 111.00414 * 204.91775 * 16 15 6 19 19 C 1.34785 * 120.00218 * 267.19785 * 18 16 15 20 20 O 1.21283 * 119.99634 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99931 * 180.02562 * 19 18 16 22 22 C 1.53007 * 109.46728 * 180.02562 * 21 19 18 23 23 N 1.46503 * 109.46672 * 179.97438 * 22 21 19 24 24 C 1.34778 * 119.99716 * 179.72237 * 23 22 21 25 25 O 1.21283 * 119.99736 * 0.27252 * 24 23 22 26 26 C 1.50696 * 120.00082 * 180.27406 * 24 23 22 27 27 C 1.53775 * 113.61568 * 277.49534 * 26 24 23 28 28 C 1.53774 * 87.08543 * 220.02046 * 27 26 24 29 29 C 1.53780 * 87.08033 * 25.43224 * 28 27 26 30 30 H 1.09004 * 109.46985 * 59.99796 * 1 2 3 31 31 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47343 * 299.99394 * 1 2 3 33 33 H 1.08994 * 109.88452 * 338.86255 * 5 3 2 34 34 H 1.09007 * 109.88289 * 99.87108 * 5 3 2 35 35 H 0.97001 * 120.00082 * 179.97438 * 10 9 7 36 36 H 1.09001 * 110.36567 * 265.28671 * 15 6 5 37 37 H 1.08996 * 110.36590 * 142.96230 * 15 6 5 38 38 H 0.96999 * 120.00069 * 87.19588 * 18 16 15 39 39 H 1.09000 * 109.47475 * 60.00051 * 21 19 18 40 40 H 1.09002 * 109.47054 * 299.99200 * 21 19 18 41 41 H 1.09000 * 109.47285 * 59.99710 * 22 21 19 42 42 H 1.08994 * 109.46677 * 299.99597 * 22 21 19 43 43 H 0.96999 * 120.00411 * 359.97438 * 23 22 21 44 44 H 1.08997 * 112.84759 * 48.80636 * 26 24 23 45 45 H 1.09003 * 113.61590 * 334.57121 * 27 26 24 46 46 H 1.09000 * 113.61233 * 105.46835 * 27 26 24 47 47 H 1.09006 * 113.61384 * 270.88334 * 28 27 26 48 48 H 1.08997 * 113.62043 * 139.98514 * 28 27 26 49 49 H 1.08995 * 113.61603 * 220.02216 * 29 28 27 50 50 H 1.08997 * 113.68996 * 89.12617 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3362 2.0288 0.4590 5 6 2.3811 1.7381 -1.4341 6 7 3.6684 2.4440 -1.3580 7 6 4.3547 2.9692 -2.4202 8 1 5.2541 3.5429 -2.2517 9 6 3.8944 2.7642 -3.7136 10 7 2.7287 2.1869 -3.9136 11 14 4.9295 3.3078 -5.1705 12 1 5.7405 2.1625 -5.6564 13 1 4.0396 3.7819 -6.2607 14 1 5.8315 4.4110 -4.7527 15 6 4.0988 2.4918 0.0513 16 6 3.3816 1.2958 0.7256 17 1 3.9156 0.3638 0.5395 18 7 3.2167 1.5250 2.1631 19 6 4.1463 1.0737 3.0286 20 8 5.1190 0.4774 2.6172 21 6 3.9763 1.3091 4.5073 22 6 5.1619 0.7014 5.2599 23 7 4.9969 0.9308 6.6975 24 6 5.9240 0.4751 7.5632 25 8 6.8971 -0.1204 7.1518 26 6 5.7513 0.7056 9.0424 27 6 6.2163 2.0955 9.5077 28 6 6.7965 1.3991 10.7499 29 6 6.8930 0.1253 9.8937 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 2.4768 0.8603 -2.0731 34 1 1.6139 2.4032 -1.8308 35 1 2.4069 2.0439 -4.8175 36 1 3.7871 3.4294 0.5115 37 1 5.1801 2.3745 0.1219 38 1 2.4386 2.0016 2.4922 39 1 3.0520 0.8410 4.8459 40 1 3.9336 2.3807 4.7021 41 1 6.0859 1.1699 4.9212 42 1 5.2051 -0.3701 5.0652 43 1 4.2188 1.4073 7.0265 44 1 4.7583 0.4335 9.4000 45 1 6.9740 2.5410 8.8630 46 1 5.3964 2.7776 9.7326 47 1 6.0891 1.3178 11.5753 48 1 7.7651 1.7922 11.0585 49 1 6.6194 -0.7832 10.4301 50 1 7.8353 0.0307 9.3541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213564887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -72.251822 kcal Electronic energy + Delta-G solvation = -29233.096727 eV Core-core repulsion = 25068.886962 eV Total energy + Delta-G solvation = -4164.209765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.57742 -39.81149 -38.28487 -37.76938 -35.97109 -35.30332 -34.08505 -31.96897 -31.14068 -28.82510 -27.57556 -26.84839 -26.14282 -26.04241 -24.52429 -23.46017 -21.28600 -20.75289 -20.54186 -20.02335 -19.65407 -17.87479 -17.36257 -16.97209 -16.38520 -16.20746 -15.93122 -15.68004 -15.54631 -14.90821 -14.76162 -14.54778 -14.37064 -14.19969 -13.64366 -13.61911 -13.26218 -13.18485 -12.87312 -12.73882 -12.47709 -12.26902 -12.12288 -11.91673 -11.76309 -11.58819 -11.52490 -11.24913 -11.04225 -10.97493 -10.83495 -10.82668 -10.76440 -10.17700 -10.04694 -9.99059 -9.82575 -9.74961 -9.33149 -9.16913 -8.77565 -8.57971 -6.90576 -5.76344 -3.10120 2.37829 2.71005 2.74147 3.37736 3.41586 3.46333 3.47528 4.07365 4.10760 4.15462 4.29113 4.37960 4.47224 4.49799 4.78392 4.81324 4.81773 5.10574 5.10601 5.19351 5.23607 5.35012 5.35447 5.44523 5.45256 5.54173 5.55225 5.61079 5.65245 5.67390 5.69184 5.81501 5.82892 5.88974 5.98472 6.02450 6.13242 6.15690 6.48284 6.60266 6.81531 7.20340 7.22420 7.45474 7.61043 7.70383 7.84291 7.98407 8.18259 8.33396 9.15496 9.75896 10.39074 11.35459 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.001908 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.503728 B =14673.310816 C =15737.431369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.108 0.892 18 N -0.715 5.715 19 C 0.516 3.484 20 O -0.533 6.533 21 C -0.152 4.152 22 C 0.132 3.868 23 N -0.732 5.732 24 C 0.520 3.480 25 O -0.534 6.534 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.143 4.143 29 C -0.119 4.119 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.253 0.747 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.399 0.601 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 0.087 27.853 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.026 3.974 17 H 0.125 0.875 18 N -0.366 5.366 19 C 0.301 3.699 20 O -0.409 6.409 21 C -0.193 4.193 22 C 0.009 3.991 23 N -0.384 5.384 24 C 0.306 3.694 25 O -0.410 6.410 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.180 4.180 29 C -0.157 4.157 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.230 0.770 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.233 0.767 44 H 0.130 0.870 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.414 -0.951 26.985 27.109 hybrid contribution -0.797 1.002 -0.623 1.424 sum -3.211 0.051 26.362 26.557 Atomic orbital electron populations 1.22706 0.81775 1.02060 0.99696 1.87920 1.19044 1.27559 1.95029 1.23843 0.92942 0.84051 0.99497 0.91952 1.21566 0.88152 0.97362 0.89081 1.44249 1.21130 1.66627 1.00769 1.19072 1.05728 1.27016 0.84018 0.90109 1.24844 0.97298 1.00692 0.97375 1.69949 1.18316 1.48312 1.20113 0.86085 0.79295 0.78026 0.82278 1.21470 1.21761 1.20563 1.21826 0.97840 0.93748 0.86268 1.22431 0.96403 1.01175 0.77422 0.87454 1.45930 1.24969 1.58443 1.07231 1.20232 0.82966 0.78925 0.87804 1.90772 1.29766 1.40715 1.79609 1.21801 1.00642 1.03670 0.93161 1.21059 0.97838 1.02002 0.78226 1.46031 1.25806 1.59318 1.07207 1.20536 0.82403 0.78203 0.88282 1.90732 1.30027 1.40662 1.79605 1.22820 1.01801 0.99950 0.91516 1.22830 1.01145 0.94411 0.97784 1.22835 1.01710 0.96853 0.96614 1.22815 0.98696 0.97525 0.96638 0.93649 0.90247 0.94889 0.91811 0.93553 0.93633 0.96027 0.93121 0.77030 0.88343 0.88245 0.90384 0.90418 0.76720 0.86956 0.89567 0.90624 0.89867 0.90905 0.90995 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.82 10.43 -35.23 -0.37 -7.19 16 3 C 0.06 1.03 3.09 -24.90 -0.08 0.95 16 4 H 0.06 0.99 7.69 -51.92 -0.40 0.59 16 5 C 0.16 3.94 5.16 -3.07 -0.02 3.92 16 6 N -0.60 -15.35 3.39 -170.08 -0.58 -15.92 16 7 C -0.23 -6.45 10.27 -15.06 -0.15 -6.61 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 9 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 10 N -0.92 -26.86 10.36 55.49 0.57 -26.29 16 11 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 16 C 0.13 2.40 3.15 -65.79 -0.21 2.19 16 17 H 0.11 2.30 7.54 -51.92 -0.39 1.91 16 18 N -0.72 -9.62 5.20 -51.73 -0.27 -9.89 16 19 C 0.52 7.07 7.83 -10.98 -0.09 6.98 16 20 O -0.53 -9.95 15.62 5.55 0.09 -9.86 16 21 C -0.15 -1.26 5.81 -27.88 -0.16 -1.43 16 22 C 0.13 1.40 4.96 -4.04 -0.02 1.38 16 23 N -0.73 -5.83 5.56 -60.29 -0.33 -6.17 16 24 C 0.52 5.27 7.35 -10.99 -0.08 5.19 16 25 O -0.53 -8.01 15.90 5.55 0.09 -7.93 16 26 C -0.14 -0.91 4.15 -90.96 -0.38 -1.29 16 27 C -0.12 -0.66 7.63 -25.93 -0.20 -0.86 16 28 C -0.14 -0.72 8.08 -25.92 -0.21 -0.93 16 29 C -0.12 -0.83 7.41 -25.92 -0.19 -1.02 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 33 H 0.06 1.76 7.21 -51.93 -0.37 1.38 16 34 H 0.05 1.20 7.61 -51.93 -0.40 0.80 16 35 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 3.92 8.57 -40.82 -0.35 3.57 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 43 H 0.40 1.74 8.47 -40.82 -0.35 1.40 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.87 7.43 -51.93 -0.39 0.48 16 LS Contribution 408.12 15.07 6.15 6.15 Total: -1.00 -36.41 408.12 -8.99 -45.41 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.52 Total: 1.96 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -0.80 Total: 12.53 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.61 Total: -58.27 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.19 Total: -24.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.41 -8.99 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213564887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.846 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds