Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99833 * 2 1 4 4 H 1.08997 * 109.46981 * 330.30704 * 3 2 1 5 5 C 1.50695 * 109.47160 * 90.30896 * 3 2 1 6 6 O 1.21280 * 120.00702 * 4.99713 * 5 3 2 7 7 N 1.34779 * 119.99761 * 185.00215 * 5 3 2 8 8 C 1.46497 * 119.99873 * 179.97438 * 7 5 3 9 9 C 1.53123 * 109.52375 * 274.86821 * 8 7 5 10 10 C 1.53044 * 109.27413 * 182.50484 * 9 8 7 11 11 N 1.46841 * 109.57905 * 59.08611 * 10 9 8 12 12 C 1.46900 * 111.00267 * 174.19175 * 11 10 9 13 13 C 1.50701 * 109.46770 * 294.20790 * 12 11 10 14 14 O 1.21293 * 120.00361 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99774 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00051 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99932 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00038 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99764 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99960 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47258 * 89.99879 * 20 18 16 22 22 H 1.48503 * 109.46846 * 210.00299 * 20 18 16 23 23 H 1.48506 * 109.47271 * 329.99673 * 20 18 16 24 24 C 1.46853 * 111.19842 * 298.29108 * 11 10 9 25 25 C 1.53037 * 109.52379 * 61.73841 * 24 11 10 26 26 C 1.53004 * 109.46811 * 210.30903 * 3 2 1 27 27 C 1.53001 * 117.49638 * 129.59656 * 26 3 2 28 28 C 1.53000 * 117.50086 * 60.93447 * 26 3 2 29 29 H 1.08996 * 109.46780 * 175.51021 * 1 2 3 30 30 H 1.09003 * 109.46750 * 55.51060 * 1 2 3 31 31 H 1.09003 * 109.47015 * 295.51500 * 1 2 3 32 32 H 0.96995 * 120.00401 * 359.97438 * 7 5 3 33 33 H 1.09002 * 109.52533 * 34.99694 * 8 7 5 34 34 H 1.09000 * 109.50116 * 302.38479 * 9 8 7 35 35 H 1.09003 * 109.49920 * 62.50059 * 9 8 7 36 36 H 1.09002 * 109.41250 * 299.06534 * 10 9 8 37 37 H 1.08999 * 109.44802 * 179.13124 * 10 9 8 38 38 H 1.08999 * 109.46892 * 54.21056 * 12 11 10 39 39 H 1.09001 * 109.46913 * 174.20969 * 12 11 10 40 40 H 0.97002 * 120.00155 * 359.97438 * 15 13 12 41 41 H 0.97005 * 119.99917 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.45538 * 301.72496 * 24 11 10 43 43 H 1.09000 * 109.45260 * 181.75097 * 24 11 10 44 44 H 1.08999 * 109.50013 * 180.88660 * 25 24 11 45 45 H 1.08997 * 109.50158 * 60.76186 * 25 24 11 46 46 H 1.09000 * 115.54943 * 275.26152 * 26 3 2 47 47 H 1.08996 * 117.49923 * 359.97438 * 27 26 3 48 48 H 1.09007 * 117.49565 * 145.02034 * 27 26 3 49 49 H 1.08997 * 117.50051 * 214.97776 * 28 26 3 50 50 H 1.09001 * 117.49456 * 0.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3425 2.0005 -0.5090 5 6 2.2215 1.7613 1.4207 6 8 1.9907 1.0057 2.3408 7 7 2.6670 3.0089 1.6690 8 6 2.8719 3.4522 3.0502 9 6 1.5501 3.9722 3.6221 10 6 1.7838 4.4914 5.0427 11 7 2.7840 5.5662 5.0155 12 6 2.9322 6.1811 6.3413 13 6 1.6526 6.8841 6.7148 14 8 0.7097 6.8735 5.9518 15 7 1.5559 7.5247 7.8966 16 6 0.3916 8.1638 8.2367 17 1 -0.4479 8.1543 7.5574 18 6 0.2917 8.8237 9.4554 19 7 -0.8241 9.4367 9.7811 20 14 1.7435 8.8395 10.6307 21 1 2.5993 10.0188 10.3445 22 1 1.2478 8.9151 12.0286 23 1 2.5374 7.5970 10.4536 24 6 4.0751 5.0776 4.5147 25 6 3.9102 4.5774 3.0778 26 6 3.3554 1.2649 -0.7280 27 6 3.5986 2.3071 -1.8215 28 6 3.3501 0.8446 -2.1991 29 1 -0.3633 -1.0245 -0.0804 30 1 -0.3633 0.5819 -0.8471 31 1 -0.3633 0.4427 0.9275 32 1 2.8520 3.6133 0.9332 33 1 3.2255 2.6155 3.6527 34 1 1.1766 4.7827 2.9962 35 1 0.8201 3.1630 3.6448 36 1 2.1431 3.6768 5.6716 37 1 0.8477 4.8764 5.4470 38 1 3.1505 5.4080 7.0780 39 1 3.7494 6.9021 6.3181 40 1 2.3097 7.5329 8.5070 41 1 -0.8940 9.8971 10.6321 42 1 4.4236 4.2602 5.1460 43 1 4.8030 5.8886 4.5356 44 1 4.8652 4.2003 2.7119 45 1 3.5748 5.3976 2.4432 46 1 4.2093 0.9632 -0.1214 47 1 2.8002 3.0213 -2.0225 48 1 4.6127 2.6906 -1.9345 49 1 4.2007 0.2666 -2.5605 50 1 2.3882 0.5974 -2.6484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227152204.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -106.404620 kcal Electronic energy + Delta-G solvation = -29821.253589 eV Core-core repulsion = 25655.562847 eV Total energy + Delta-G solvation = -4165.690742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47578 -40.65792 -39.48610 -38.54339 -37.34424 -36.22079 -35.73417 -33.76446 -32.91309 -31.83070 -30.01564 -28.64577 -27.10800 -26.05362 -24.25300 -23.90925 -23.17696 -22.32894 -21.47367 -21.26291 -20.88260 -20.19649 -18.75120 -18.04079 -17.67772 -17.08377 -16.92507 -16.78091 -16.55711 -16.34266 -15.80662 -15.73317 -15.55003 -15.35240 -15.12636 -14.95801 -14.54074 -14.51081 -14.38620 -14.07422 -13.92062 -13.77849 -13.25003 -12.97593 -12.81309 -12.64829 -12.43352 -12.39611 -12.34961 -12.20815 -12.18588 -11.99444 -11.84770 -11.80196 -11.55911 -11.45024 -11.38102 -11.14904 -10.42094 -10.29020 -10.23249 -10.06207 -9.21275 -8.40636 -6.01064 1.30300 1.35808 1.44473 1.48839 1.97069 1.97556 2.23383 2.45951 2.62625 3.14324 3.21229 3.22688 3.51034 3.70705 3.79462 3.82181 3.87743 4.03435 4.07331 4.13413 4.19458 4.25945 4.32873 4.33758 4.40973 4.46550 4.49774 4.55014 4.56059 4.63357 4.74616 4.78000 4.84720 4.89548 4.98502 5.04353 5.07042 5.11093 5.17610 5.29101 5.29713 5.46947 5.54112 5.90342 5.95062 6.02069 6.22899 6.53595 6.61040 6.89800 7.19985 7.41339 7.99091 8.77070 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.001985 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.597725 B =14099.444367 C =14622.969407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.108 3.892 4 H 0.109 0.891 5 C 0.490 3.510 6 O -0.577 6.577 7 N -0.703 5.703 8 C 0.151 3.849 9 C -0.111 4.111 10 C 0.060 3.940 11 N -0.532 5.532 12 C 0.054 3.946 13 C 0.450 3.550 14 O -0.605 6.605 15 N -0.593 5.593 16 C -0.325 4.325 17 H 0.054 0.946 18 C -0.018 4.018 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.233 1.233 24 C 0.055 3.945 25 C -0.110 4.110 26 C -0.172 4.172 27 C -0.149 4.149 28 C -0.161 4.161 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.417 0.583 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.028 0.972 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.389 0.611 41 H 0.278 0.722 42 H 0.042 0.958 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.117 0.883 49 H 0.104 0.896 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.842 -14.803 -22.682 31.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.296 6.296 3 C 0.046 3.954 4 H 0.127 0.873 5 C 0.276 3.724 6 O -0.456 6.456 7 N -0.356 5.356 8 C 0.046 3.954 9 C -0.150 4.150 10 C -0.069 4.069 11 N -0.258 5.258 12 C -0.077 4.077 13 C 0.238 3.762 14 O -0.489 6.489 15 N -0.235 5.235 16 C -0.455 4.455 17 H 0.073 0.927 18 C -0.216 4.216 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.179 1.179 22 H -0.202 1.202 23 H -0.156 1.156 24 C -0.072 4.072 25 C -0.148 4.148 26 C -0.191 4.191 27 C -0.186 4.186 28 C -0.198 4.198 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.254 0.746 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.146 0.854 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.103 0.897 46 H 0.120 0.880 47 H 0.131 0.869 48 H 0.135 0.865 49 H 0.123 0.877 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.865 -15.064 -22.752 31.563 hybrid contribution -0.254 0.029 1.663 1.683 sum 15.611 -15.034 -21.088 30.240 Atomic orbital electron populations 1.23021 0.79611 1.04314 1.00268 1.87975 1.21180 1.26134 1.94289 1.21685 0.96474 0.86698 0.90515 0.87300 1.21858 0.76108 0.81781 0.92630 1.90704 1.51873 1.55267 1.47747 1.45932 1.66795 1.13924 1.08978 1.20933 0.94955 0.96918 0.82643 1.21783 0.97881 0.99444 0.95918 1.21998 0.96718 0.91414 0.96721 1.61495 1.09035 1.31240 1.23987 1.21834 0.95127 0.99502 0.91267 1.20942 0.90999 0.82551 0.81697 1.90517 1.42171 1.64218 1.51961 1.42049 1.14115 1.49532 1.17834 1.18982 0.92530 1.30438 1.03513 0.92747 1.26129 1.01012 0.95466 0.98987 1.69810 1.28378 1.35124 1.24341 0.85353 0.77902 0.80711 0.77471 1.17914 1.20204 1.15600 1.22227 0.89741 0.99931 0.95330 1.21807 0.98922 0.96921 0.97132 1.22012 0.95218 1.09462 0.92432 1.23267 1.04872 0.92055 0.98388 1.22959 1.04051 0.98411 0.94419 0.88069 0.91411 0.95507 0.74593 0.91506 0.91444 0.93449 0.95388 0.92240 0.90888 0.85401 0.77540 0.91215 0.93977 0.87712 0.87915 0.89720 0.87964 0.86896 0.86480 0.87736 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.87 113.37 1.23 1.63 16 2 O -0.38 -8.17 9.81 -129.99 -1.28 -9.44 16 3 C 0.11 1.80 2.71 29.85 0.08 1.88 16 4 H 0.11 1.25 7.48 -2.39 -0.02 1.24 16 5 C 0.49 11.28 7.09 87.66 0.62 11.90 16 6 O -0.58 -19.37 16.17 15.96 0.26 -19.11 16 7 N -0.70 -12.44 5.04 -442.14 -2.23 -14.68 16 8 C 0.15 3.27 2.52 45.07 0.11 3.38 16 9 C -0.11 -3.20 5.68 30.65 0.17 -3.02 16 10 C 0.06 1.99 5.10 86.33 0.44 2.43 16 11 N -0.53 -15.66 4.40 -900.91 -3.96 -19.62 16 12 C 0.05 1.64 5.45 85.56 0.47 2.11 16 13 C 0.45 20.40 7.46 87.66 0.65 21.05 16 14 O -0.60 -33.48 13.90 -3.07 -0.04 -33.52 16 15 N -0.59 -28.10 5.09 -306.98 -1.56 -29.66 16 16 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 17 H 0.05 3.83 7.39 -2.91 -0.02 3.80 16 18 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 19 N -0.94 -56.88 13.96 21.66 0.30 -56.58 16 20 Si 0.97 39.01 27.74 68.60 1.90 40.91 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 24 C 0.06 1.06 5.46 86.32 0.47 1.53 16 25 C -0.11 -1.74 5.57 30.65 0.17 -1.57 16 26 C -0.17 -2.10 5.34 -10.79 -0.06 -2.16 16 27 C -0.15 -0.87 10.18 30.62 0.31 -0.56 16 28 C -0.16 -1.45 10.17 30.62 0.31 -1.14 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 0.76 7.98 -2.39 -0.02 0.74 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.42 4.49 8.60 -92.71 -0.80 3.69 16 33 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 2.54 5.78 -2.39 -0.01 2.53 16 38 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 39 H 0.13 3.02 7.99 -2.39 -0.02 3.00 16 40 H 0.39 15.21 5.76 -92.71 -0.53 14.68 16 41 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 42 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.10 1.55 8.01 -2.39 -0.02 1.53 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.10 1.48 8.12 -2.39 -0.02 1.46 16 47 H 0.11 0.38 8.05 -2.39 -0.02 0.36 16 48 H 0.12 0.40 8.14 -2.38 -0.02 0.39 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -86.31 404.83 -0.74 -87.05 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.44 Total: 36.06 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 6.31 Total: 18.60 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -7.45 Total: -120.54 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -1.06 Total: -62.07 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.90 Total: 40.91 kcal Total: -86.31 -0.74 -87.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227152204.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.358 kcal (2) G-P(sol) polarization free energy of solvation -86.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds