Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47469 * 2 1 4 4 H 1.09004 * 109.47338 * 178.65965 * 3 2 1 5 5 C 1.50706 * 109.46948 * 58.66232 * 3 2 1 6 6 H 1.08002 * 119.99601 * 239.99612 * 5 3 2 7 7 C 1.37867 * 120.00134 * 60.00237 * 5 3 2 8 8 N 1.31514 * 120.00333 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00252 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47030 * 60.00067 * 9 7 5 11 11 H 1.48494 * 109.47392 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47395 * 300.00013 * 9 7 5 13 13 N 1.46899 * 109.47041 * 298.66294 * 3 2 1 14 14 C 1.47983 * 110.43251 * 301.27230 * 13 3 2 15 15 C 1.54092 * 105.14317 * 207.32840 * 14 13 3 16 16 H 1.08995 * 110.52073 * 148.82632 * 15 14 13 17 17 O 1.42899 * 110.41736 * 271.24011 * 15 14 13 18 18 C 1.42903 * 114.00301 * 265.11708 * 17 15 14 19 19 C 1.52994 * 109.47284 * 180.02562 * 18 17 15 20 20 C 1.53182 * 109.54673 * 294.82741 * 19 18 17 21 21 C 1.53098 * 109.15926 * 183.24087 * 20 19 18 22 22 O 1.42911 * 109.48766 * 57.47331 * 21 20 19 23 23 C 1.42902 * 114.09343 * 298.88893 * 22 21 20 24 24 C 1.53091 * 109.41598 * 61.15953 * 23 22 21 25 25 C 1.53884 * 104.54294 * 30.00580 * 15 14 13 26 26 H 1.08995 * 112.34917 * 105.16875 * 25 15 14 27 27 C 1.54380 * 109.63796 * 230.88664 * 25 15 14 28 28 O 1.44680 * 104.79177 * 137.03665 * 27 25 15 29 29 C 1.44380 * 105.13972 * 319.14694 * 28 27 25 30 30 C 1.47229 * 110.99711 * 181.94400 * 13 3 2 31 31 H 1.08997 * 112.45927 * 17.56427 * 30 13 3 32 32 H 1.09001 * 109.47136 * 303.88306 * 1 2 3 33 33 H 1.09007 * 109.46774 * 63.87801 * 1 2 3 34 34 H 1.08998 * 109.47392 * 183.87792 * 1 2 3 35 35 H 1.09001 * 109.46829 * 239.99570 * 2 1 3 36 36 H 1.09008 * 109.46651 * 120.00032 * 2 1 3 37 37 H 0.97002 * 120.00711 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.96785 * 88.62564 * 14 13 3 39 39 H 1.09003 * 110.76585 * 326.43208 * 14 13 3 40 40 H 1.08997 * 109.47302 * 300.00856 * 18 17 15 41 41 H 1.09002 * 109.46539 * 60.00183 * 18 17 15 42 42 H 1.09006 * 109.54401 * 55.00529 * 19 18 17 43 43 H 1.09001 * 109.51910 * 303.05638 * 20 19 18 44 44 H 1.09001 * 109.52212 * 63.24068 * 20 19 18 45 45 H 1.08999 * 109.40997 * 297.49167 * 21 20 19 46 46 H 1.08999 * 109.49498 * 177.50533 * 21 20 19 47 47 H 1.09000 * 109.48399 * 301.17165 * 23 22 21 48 48 H 1.09006 * 109.48585 * 181.14653 * 23 22 21 49 49 H 1.09002 * 109.52336 * 182.48054 * 24 23 22 50 50 H 1.09000 * 109.57235 * 62.32822 * 24 23 22 51 51 H 1.08990 * 110.38152 * 255.85648 * 27 25 15 52 52 H 1.08997 * 110.37620 * 18.10583 * 27 25 15 53 53 H 1.09002 * 110.33875 * 281.45035 * 29 28 27 54 54 H 1.08998 * 110.34697 * 159.29778 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1298 1.4425 0.0240 5 6 1.5108 2.1623 1.2136 6 1 0.8924 3.0397 1.0940 7 6 1.8162 1.7011 2.4764 8 7 2.5689 0.6326 2.6221 9 14 1.1608 2.5939 3.9807 10 1 -0.3238 2.5943 3.9483 11 1 1.6283 1.9029 5.2092 12 1 1.6564 3.9937 3.9806 13 7 1.5770 2.1255 -1.2153 14 6 2.0599 1.4175 -2.4217 15 6 2.1508 2.5002 -3.5144 16 1 2.9539 2.2700 -4.2145 17 8 0.9057 2.6160 -4.2062 18 6 0.8345 1.8460 -5.4078 19 6 -0.5343 2.0458 -6.0613 20 6 -1.6250 1.4712 -5.1521 21 6 -2.9815 1.6026 -5.8497 22 8 -2.9366 0.9303 -7.1099 23 6 -1.9675 1.4575 -8.0182 24 6 -0.5701 1.3182 -7.4087 25 6 2.4619 3.7977 -2.7479 26 1 3.5008 4.1073 -2.8616 27 6 1.4698 4.9017 -3.1723 28 8 1.0917 5.5533 -1.9372 29 6 0.9287 4.4838 -0.9811 30 6 2.0882 3.5050 -1.2723 31 1 2.9315 3.6648 -0.6004 32 1 -0.3633 0.5729 0.8532 33 1 -0.3633 0.4525 -0.9228 34 1 -0.3634 -1.0253 0.0695 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8901 37 1 2.7835 0.3078 3.5106 38 1 1.3457 0.6469 -2.7119 39 1 3.0409 0.9767 -2.2444 40 1 1.6157 2.1714 -6.0948 41 1 0.9745 0.7910 -5.1721 42 1 -0.7124 3.1099 -6.2167 43 1 -1.4184 0.4191 -4.9555 44 1 -1.6427 2.0218 -4.2115 45 1 -3.2066 2.6573 -6.0082 46 1 -3.7559 1.1553 -5.2265 47 1 -2.1793 2.5103 -8.2051 48 1 -2.0112 0.9057 -8.9573 49 1 0.1661 1.7596 -8.0806 50 1 -0.3404 0.2632 -7.2593 51 1 1.9553 5.6112 -3.8423 52 1 0.5964 4.4623 -3.6542 53 1 -0.0312 3.9882 -1.1270 54 1 1.0046 4.8694 0.0355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167385.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -151.216461 kcal Electronic energy + Delta-G solvation = -32494.757070 eV Core-core repulsion = 28430.663485 eV Total energy + Delta-G solvation = -4064.093586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.55714 -40.32430 -38.53469 -38.11863 -35.69354 -34.73044 -33.26488 -31.97692 -31.53575 -30.36715 -28.75090 -28.26491 -27.20299 -25.02968 -24.45691 -23.87826 -23.70390 -22.48965 -21.11042 -20.80407 -20.69943 -18.21417 -18.02002 -17.60591 -17.13968 -16.89450 -16.76578 -16.52082 -16.39861 -15.66739 -15.62095 -15.52039 -15.16650 -15.08448 -14.81179 -14.60534 -14.43397 -14.18653 -13.94912 -13.61005 -13.44119 -13.28643 -13.12764 -12.88698 -12.77761 -12.55320 -12.51214 -12.31350 -12.21791 -12.10118 -11.88192 -11.83214 -11.65764 -11.60513 -11.51650 -11.42247 -11.23149 -11.15109 -10.80398 -10.65276 -10.47431 -10.42855 -10.31247 -8.99349 -8.07381 -6.15737 1.41961 1.43002 1.49440 2.43215 2.59556 3.02301 3.07576 3.21954 3.29472 3.52674 3.71812 3.81957 3.90631 3.95507 4.00445 4.12676 4.19342 4.32185 4.38747 4.41587 4.44138 4.48556 4.52548 4.57852 4.62781 4.66342 4.68546 4.72463 4.73089 4.84059 4.85256 4.89002 4.91226 4.93052 4.97064 5.00231 5.04949 5.10448 5.19021 5.23890 5.25842 5.29500 5.39035 5.43583 5.47972 5.72331 5.76058 5.85692 5.89574 6.27790 6.31007 6.35892 6.44926 6.69093 6.96081 7.51720 8.98109 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.003330 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.563325 B = 8407.085754 C = 9094.030505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C 0.218 3.782 4 H -0.039 1.039 5 C -0.502 4.502 6 H 0.059 0.941 7 C 0.018 3.982 8 N -0.919 5.919 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.497 5.497 14 C 0.023 3.977 15 C 0.104 3.896 16 H 0.095 0.905 17 O -0.372 6.372 18 C 0.063 3.937 19 C -0.082 4.082 20 C -0.144 4.144 21 C 0.061 3.939 22 O -0.406 6.406 23 C 0.056 3.944 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.110 0.890 27 C 0.059 3.941 28 O -0.401 6.401 29 C 0.076 3.924 30 C 0.055 3.945 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.259 0.741 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.108 0.892 49 H 0.095 0.905 50 H 0.068 0.932 51 H 0.103 0.897 52 H 0.085 0.915 53 H 0.059 0.941 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 2.929 -21.762 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.141 4.141 3 C 0.111 3.889 4 H -0.022 1.022 5 C -0.540 4.540 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.222 5.222 14 C -0.106 4.106 15 C 0.046 3.954 16 H 0.113 0.887 17 O -0.292 6.292 18 C -0.013 4.013 19 C -0.101 4.101 20 C -0.181 4.181 21 C -0.016 4.016 22 O -0.325 6.325 23 C -0.020 4.020 24 C -0.181 4.181 25 C -0.150 4.150 26 H 0.128 0.872 27 C -0.017 4.017 28 O -0.320 6.320 29 C -0.001 4.001 30 C -0.055 4.055 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.077 0.923 48 H 0.126 0.874 49 H 0.114 0.886 50 H 0.087 0.913 51 H 0.122 0.878 52 H 0.103 0.897 53 H 0.077 0.923 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.454 3.007 -21.540 22.200 hybrid contribution 1.281 -0.158 1.673 2.113 sum -3.174 2.849 -19.867 20.320 Atomic orbital electron populations 1.21299 0.95910 0.98313 1.00793 1.21387 0.96286 0.97387 0.99069 1.19235 0.90509 0.91845 0.87282 1.02197 1.21269 1.30487 1.11744 0.90508 0.92258 1.25522 0.95590 0.95729 1.01237 1.69991 1.38612 1.24266 1.23039 0.85834 0.78947 0.78835 0.79404 1.19821 1.21336 1.19965 1.64113 1.55656 1.00364 1.02078 1.23443 0.98262 0.97555 0.91301 1.22482 0.86970 0.93080 0.92892 0.88676 1.87922 1.35234 1.68068 1.37952 1.22703 0.97670 0.95027 0.85944 1.21135 0.93310 1.00843 0.94766 1.22106 0.95426 1.01339 0.99266 1.22623 0.97157 0.97244 0.84538 1.87903 1.58945 1.59709 1.25988 1.22740 0.86999 0.99566 0.92706 1.22148 0.98692 1.01387 0.95862 1.23452 1.01380 0.96370 0.93821 0.87162 1.23446 0.98093 0.93314 0.86814 1.89066 1.90385 1.30748 1.21841 1.23231 0.97907 0.86780 0.92189 1.23269 0.95741 0.91119 0.95355 0.93388 0.94540 0.93275 0.94860 0.95528 0.92150 0.93215 0.90577 0.94559 0.91402 0.93684 0.90168 0.92365 0.91399 0.92478 0.88766 0.92300 0.87396 0.88644 0.91342 0.87842 0.89714 0.92318 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 9.52 71.98 0.69 -3.91 16 2 C -0.10 -4.83 5.23 30.59 0.16 -4.67 16 3 C 0.22 10.63 1.36 44.17 0.06 10.69 16 4 H -0.04 -2.18 8.07 -2.39 -0.02 -2.20 16 5 C -0.50 -26.51 6.65 25.60 0.17 -26.34 16 6 H 0.06 3.13 5.88 -2.91 -0.02 3.11 16 7 C 0.02 0.96 5.30 84.65 0.45 1.41 16 8 N -0.92 -52.14 11.33 21.44 0.24 -51.90 16 9 Si 0.94 43.63 29.54 68.60 2.03 45.65 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.50 -20.08 3.93 -837.39 -3.29 -23.37 16 14 C 0.02 0.75 4.95 86.46 0.43 1.18 16 15 C 0.10 2.69 3.45 31.26 0.11 2.80 16 16 H 0.10 1.91 7.81 -2.39 -0.02 1.89 16 17 O -0.37 -9.16 7.14 -148.98 -1.06 -10.22 16 18 C 0.06 1.16 5.16 71.98 0.37 1.53 16 19 C -0.08 -1.40 2.51 -10.68 -0.03 -1.43 16 20 C -0.14 -2.99 5.29 30.69 0.16 -2.82 16 21 C 0.06 1.16 6.84 72.01 0.49 1.65 16 22 O -0.41 -8.29 10.77 -148.98 -1.60 -9.90 16 23 C 0.06 0.78 6.84 72.01 0.49 1.28 16 24 C -0.14 -1.88 5.42 30.68 0.17 -1.72 16 25 C -0.13 -3.74 4.07 -9.34 -0.04 -3.78 16 26 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 27 C 0.06 1.64 7.02 72.45 0.51 2.15 16 28 O -0.40 -14.09 11.67 -148.98 -1.74 -15.82 16 29 C 0.08 2.92 6.21 72.49 0.45 3.37 16 30 C 0.05 2.08 2.96 46.05 0.14 2.22 16 31 H 0.05 2.07 7.69 -2.39 -0.02 2.05 16 32 H 0.04 1.74 7.04 -2.39 -0.02 1.72 16 33 H 0.05 2.02 7.76 -2.38 -0.02 2.00 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.03 1.13 6.93 -2.39 -0.02 1.11 16 36 H 0.06 3.23 6.11 -2.38 -0.01 3.21 16 37 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 38 H 0.08 2.55 7.89 -2.39 -0.02 2.53 16 39 H 0.04 1.25 7.84 -2.39 -0.02 1.24 16 40 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 41 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.67 7.92 -2.39 -0.02 1.65 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.08 2.40 5.84 -2.39 -0.01 2.39 16 53 H 0.06 2.37 7.98 -2.39 -0.02 2.35 16 54 H 0.07 2.94 7.54 -2.39 -0.02 2.93 16 Total: -1.00 -61.65 400.91 0.20 -61.46 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.85 Total: 20.48 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.78 Total: -16.38 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -3.05 Total: -75.27 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -4.41 Total: -35.94 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -61.65 0.20 -61.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167385.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.761 kcal (2) G-P(sol) polarization free energy of solvation -61.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds