Wall clock time and date at job start Sat Apr 11 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99935 * 2 1 4 4 H 1.08999 * 110.67146 * 31.78864 * 3 2 1 5 5 C 1.54888 * 110.75504 * 268.54864 * 3 2 1 6 6 C 1.54273 * 104.19122 * 203.55912 * 5 3 2 7 7 C 1.53870 * 106.60182 * 23.61350 * 6 5 3 8 8 H 1.09000 * 110.03517 * 119.32869 * 7 6 5 9 9 N 1.46498 * 110.03189 * 240.71452 * 7 6 5 10 10 C 1.34771 * 120.00050 * 273.54291 * 9 7 6 11 11 O 1.21353 * 120.00072 * 359.97438 * 10 9 7 12 12 C 1.49448 * 120.00162 * 180.02562 * 10 9 7 13 13 O 1.21343 * 119.99985 * 6.48392 * 12 10 9 14 14 N 1.34774 * 119.99944 * 186.48015 * 12 10 9 15 15 C 1.47079 * 120.88374 * 178.44774 * 14 12 10 16 16 C 1.53240 * 108.52454 * 231.16546 * 15 14 12 17 17 N 1.46898 * 109.34053 * 306.16713 * 16 15 14 18 18 C 1.46896 * 111.00125 * 187.25128 * 17 16 15 19 19 C 1.50704 * 109.46991 * 169.99997 * 18 17 16 20 20 H 1.08007 * 119.99998 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99924 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00006 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47153 * 90.00095 * 23 21 19 25 25 H 1.48500 * 109.46797 * 210.00049 * 23 21 19 26 26 H 1.48495 * 109.46754 * 330.00028 * 23 21 19 27 27 C 1.46905 * 111.26889 * 63.10160 * 17 16 15 28 28 C 1.47076 * 120.88489 * 358.42581 * 14 12 10 29 29 C 1.54267 * 106.59550 * 359.97438 * 7 6 5 30 30 H 1.09001 * 109.46699 * 299.99607 * 1 2 3 31 31 H 1.09000 * 109.47227 * 59.99545 * 1 2 3 32 32 H 1.08995 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.48709 * 84.88761 * 5 3 2 34 34 H 1.08995 * 110.60016 * 322.29120 * 5 3 2 35 35 H 1.08995 * 110.03203 * 264.32338 * 6 5 3 36 36 H 1.09008 * 110.06783 * 142.92289 * 6 5 3 37 37 H 0.97006 * 119.99993 * 93.54734 * 9 7 6 38 38 H 1.08998 * 109.63270 * 111.44882 * 15 14 12 39 39 H 1.09004 * 109.78673 * 350.96691 * 15 14 12 40 40 H 1.09001 * 109.49710 * 186.20621 * 16 15 14 41 41 H 1.09006 * 109.49118 * 66.12586 * 16 15 14 42 42 H 1.09001 * 109.47343 * 50.00200 * 18 17 16 43 43 H 1.08998 * 109.47239 * 289.99774 * 18 17 16 44 44 H 0.97002 * 119.99585 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.49164 * 56.85652 * 27 17 16 46 46 H 1.08997 * 109.49200 * 176.93769 * 27 17 16 47 47 H 1.09008 * 109.63298 * 248.54636 * 28 14 12 48 48 H 1.09000 * 109.62770 * 9.12445 * 28 14 12 49 49 H 1.08999 * 110.49119 * 95.07020 * 29 7 6 50 50 H 1.09004 * 110.48297 * 217.71490 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3748 2.0096 0.5372 5 6 2.2670 1.7920 -1.4479 6 6 3.3858 2.8439 -1.3006 7 6 4.1280 2.5162 0.0068 8 1 5.1743 2.2943 -0.2033 9 7 4.0315 3.6454 0.9352 10 6 4.9278 4.6498 0.8700 11 8 5.8150 4.6187 0.0427 12 6 4.8297 5.8014 1.8175 13 8 4.0184 5.7776 2.7195 14 7 5.6424 6.8664 1.6701 15 6 5.5397 8.0248 2.5704 16 6 5.4324 9.2948 1.7195 17 7 6.5543 9.3419 0.7724 18 6 6.5855 10.6244 0.0567 19 6 7.8741 10.7368 -0.7167 20 1 8.5973 9.9354 -0.6805 21 6 8.1298 11.8627 -1.4704 22 7 9.2545 11.9609 -2.1450 23 14 6.8786 13.2484 -1.5335 24 1 7.1581 14.2176 -0.4437 25 1 6.9701 13.9385 -2.8452 26 1 5.5132 12.6905 -1.3617 27 6 6.5049 8.2150 -0.1687 28 6 6.6560 6.9008 0.6049 29 6 3.4339 1.2770 0.6088 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.3676 2.2473 -1.8625 34 1 2.6001 0.9663 -2.0765 35 1 2.9539 3.8431 -1.2445 36 1 4.0719 2.7810 -2.1454 37 1 3.3226 3.6701 1.5968 38 1 6.4281 8.0796 3.1996 39 1 4.6529 7.9278 3.1968 40 1 5.4664 10.1707 2.3674 41 1 4.4917 9.2853 1.1689 42 1 6.5198 11.4425 0.7740 43 1 5.7425 10.6767 -0.6323 44 1 9.4345 12.7532 -2.6749 45 1 5.5493 8.2206 -0.6930 46 1 7.3166 8.3078 -0.8902 47 1 7.6519 6.8475 1.0450 48 1 6.5058 6.0588 -0.0708 49 1 3.9559 0.3666 0.3143 50 1 3.3865 1.3564 1.6949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261968583.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:46 Heat of formation + Delta-G solvation = -83.389065 kcal Electronic energy + Delta-G solvation = -30108.836067 eV Core-core repulsion = 25944.143355 eV Total energy + Delta-G solvation = -4164.692712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10508 -39.70850 -38.61839 -37.70063 -36.82919 -34.65510 -33.44173 -32.37698 -30.86886 -29.31165 -28.92555 -28.25880 -26.55157 -26.08782 -24.17733 -23.30954 -21.60581 -21.25957 -20.78176 -20.64808 -19.47536 -17.76870 -17.34605 -17.01719 -16.77555 -16.50403 -16.07664 -15.92068 -15.35488 -15.15014 -14.71050 -14.61478 -14.39091 -14.14188 -14.10205 -13.92553 -13.79737 -13.49917 -13.26225 -12.88347 -12.53483 -12.43053 -12.27790 -12.10592 -11.84181 -11.73071 -11.64109 -11.56244 -11.28772 -11.18617 -11.04650 -10.86626 -10.76344 -10.56582 -10.36939 -10.03131 -9.92357 -9.54921 -9.35070 -9.05532 -8.65528 -8.59672 -7.46317 -6.08221 -4.06039 1.32356 2.20640 3.10157 3.24771 3.25923 3.33560 3.35121 3.40012 4.00919 4.08674 4.22034 4.38955 4.53609 4.67587 4.78084 4.81396 4.85349 4.96161 5.02042 5.06727 5.12639 5.20664 5.23216 5.24532 5.32990 5.35645 5.49633 5.54564 5.57941 5.61296 5.65405 5.76260 5.77720 5.86686 5.93852 6.09609 6.22803 6.42049 6.48147 6.57377 6.73472 6.80307 6.86202 6.93070 7.29704 7.52838 7.65068 7.81292 7.91325 7.96030 8.60694 8.99665 9.53093 11.04615 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.002178 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.649343 B =12855.693446 C =13347.620851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.079 3.921 4 H 0.071 0.929 5 C -0.146 4.146 6 C -0.134 4.134 7 C 0.140 3.860 8 H 0.103 0.897 9 N -0.697 5.697 10 C 0.513 3.487 11 O -0.501 6.501 12 C 0.502 3.498 13 O -0.538 6.538 14 N -0.569 5.569 15 C 0.114 3.886 16 C 0.039 3.961 17 N -0.528 5.528 18 C 0.162 3.838 19 C -0.511 4.511 20 H 0.082 0.918 21 C 0.069 3.931 22 N -0.898 5.898 23 Si 0.875 3.125 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.269 1.269 27 C 0.052 3.948 28 C 0.056 3.944 29 C -0.126 4.126 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.411 0.589 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.027 0.973 42 H 0.025 0.975 43 H -0.012 1.012 44 H 0.264 0.736 45 H 0.023 0.977 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.150 0.850 49 H 0.096 0.904 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.619 -22.658 5.617 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.021 3.979 4 H 0.089 0.911 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.036 3.964 8 H 0.121 0.879 9 N -0.351 5.351 10 C 0.295 3.705 11 O -0.377 6.377 12 C 0.284 3.716 13 O -0.417 6.417 14 N -0.301 5.301 15 C -0.009 4.009 16 C -0.090 4.090 17 N -0.253 5.253 18 C 0.036 3.964 19 C -0.549 4.549 20 H 0.100 0.900 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.702 3.298 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.194 1.194 27 C -0.077 4.077 28 C -0.064 4.064 29 C -0.164 4.164 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.248 0.752 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.006 0.994 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.122 0.878 47 H 0.094 0.906 48 H 0.167 0.833 49 H 0.114 0.886 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.743 -22.759 5.634 28.241 hybrid contribution -1.848 1.439 -0.286 2.360 sum -17.591 -21.320 5.348 28.153 Atomic orbital electron populations 1.22790 0.80921 1.02822 1.00094 1.87896 1.19771 1.27324 1.94944 1.23206 0.94364 0.84595 0.95753 0.91130 1.22859 0.98955 0.99185 0.97365 1.22549 0.97620 0.99518 0.97586 1.21660 1.01716 0.84391 0.88642 0.87869 1.45986 1.31392 1.20769 1.36914 1.20326 0.82087 0.83840 0.84254 1.90403 1.33650 1.76106 1.37581 1.19907 0.82153 0.84003 0.85488 1.90720 1.37108 1.80089 1.33739 1.48196 1.33833 1.15981 1.32087 1.21914 1.03220 0.83578 0.92152 1.22442 0.93292 0.97020 0.96289 1.61948 1.40247 1.04324 1.18769 1.20181 0.97303 0.86222 0.92692 1.21012 1.02216 1.04984 1.26691 0.89995 1.24899 0.95196 0.98042 0.95160 1.69894 1.23874 1.29005 1.30930 0.86868 0.82408 0.82844 0.77657 1.20127 1.21182 1.19383 1.22396 1.01347 0.89242 0.94731 1.23490 0.90751 1.01986 0.90205 1.22675 0.94626 0.98123 1.00943 0.93938 0.93967 0.89580 0.91320 0.90180 0.90771 0.90054 0.75236 0.90106 0.89116 0.89801 0.95476 0.95660 0.99387 0.92624 0.95923 0.87791 0.90576 0.83348 0.88596 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.88 101.05 1.10 1.26 16 2 O -0.38 -2.95 10.50 -35.23 -0.37 -3.32 16 3 C 0.08 0.52 3.34 -24.75 -0.08 0.44 16 4 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 5 C -0.15 -0.95 6.55 -25.07 -0.16 -1.12 16 6 C -0.13 -1.02 6.58 -25.61 -0.17 -1.19 16 7 C 0.14 1.09 3.23 -66.82 -0.22 0.87 16 8 H 0.10 0.88 7.61 -51.93 -0.39 0.49 16 9 N -0.70 -6.44 4.93 -53.16 -0.26 -6.70 16 10 C 0.51 6.42 7.80 -11.59 -0.09 6.33 16 11 O -0.50 -7.10 12.71 5.49 0.07 -7.03 16 12 C 0.50 7.22 7.77 -11.59 -0.09 7.13 16 13 O -0.54 -8.28 15.96 5.50 0.09 -8.19 16 14 N -0.57 -8.70 3.01 -172.97 -0.52 -9.22 16 15 C 0.11 1.68 6.59 -3.60 -0.02 1.65 16 16 C 0.04 0.66 5.62 -3.70 -0.02 0.63 16 17 N -0.53 -10.82 4.62 -235.76 -1.09 -11.91 16 18 C 0.16 3.87 3.79 -4.98 -0.02 3.85 16 19 C -0.51 -14.24 8.96 -34.44 -0.31 -14.55 16 20 H 0.08 2.47 7.37 -52.48 -0.39 2.09 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 23 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 27 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 28 C 0.06 0.91 6.36 -3.60 -0.02 0.88 16 29 C -0.13 -0.80 6.16 -25.08 -0.15 -0.95 16 30 H 0.04 0.19 8.11 -51.93 -0.42 -0.23 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 36 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.41 3.34 8.04 -40.82 -0.33 3.01 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.25 7.08 -51.93 -0.37 0.88 16 40 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 43 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 2.19 6.67 -51.93 -0.35 1.84 16 47 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 48 H 0.15 2.34 3.92 -56.53 -0.22 2.12 16 49 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.48 7.97 -51.93 -0.41 0.07 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -32.23 393.33 -8.70 -40.93 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.27 Total: 1.24 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.38 Total: 8.08 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -1.10 Total: -54.25 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.21 Total: -18.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.23 -8.70 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261968583.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.462 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds