Wall clock time and date at job start Sat Apr 11 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99935 * 2 1 4 4 H 1.08999 * 110.67146 * 31.78864 * 3 2 1 5 5 C 1.54888 * 110.75504 * 268.54864 * 3 2 1 6 6 C 1.54273 * 104.19122 * 203.55912 * 5 3 2 7 7 C 1.53870 * 106.60182 * 23.61350 * 6 5 3 8 8 H 1.09000 * 110.03517 * 119.32869 * 7 6 5 9 9 N 1.46498 * 110.03189 * 240.71452 * 7 6 5 10 10 C 1.34771 * 120.00050 * 273.54291 * 9 7 6 11 11 O 1.21353 * 120.00072 * 359.97438 * 10 9 7 12 12 C 1.49448 * 120.00162 * 180.02562 * 10 9 7 13 13 O 1.21343 * 119.99985 * 6.48392 * 12 10 9 14 14 N 1.34774 * 119.99944 * 186.48015 * 12 10 9 15 15 C 1.47079 * 120.88374 * 178.44774 * 14 12 10 16 16 C 1.53240 * 108.52454 * 231.16546 * 15 14 12 17 17 N 1.46898 * 109.34053 * 306.16713 * 16 15 14 18 18 C 1.46896 * 111.00125 * 187.25128 * 17 16 15 19 19 C 1.50704 * 109.46991 * 169.99997 * 18 17 16 20 20 H 1.08007 * 119.99998 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99924 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00006 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47153 * 90.00095 * 23 21 19 25 25 H 1.48500 * 109.46797 * 210.00049 * 23 21 19 26 26 H 1.48495 * 109.46754 * 330.00028 * 23 21 19 27 27 C 1.46905 * 111.26889 * 63.10160 * 17 16 15 28 28 C 1.47076 * 120.88489 * 358.42581 * 14 12 10 29 29 C 1.54267 * 106.59550 * 359.97438 * 7 6 5 30 30 H 1.09001 * 109.46699 * 299.99607 * 1 2 3 31 31 H 1.09000 * 109.47227 * 59.99545 * 1 2 3 32 32 H 1.08995 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.48709 * 84.88761 * 5 3 2 34 34 H 1.08995 * 110.60016 * 322.29120 * 5 3 2 35 35 H 1.08995 * 110.03203 * 264.32338 * 6 5 3 36 36 H 1.09008 * 110.06783 * 142.92289 * 6 5 3 37 37 H 0.97006 * 119.99993 * 93.54734 * 9 7 6 38 38 H 1.08998 * 109.63270 * 111.44882 * 15 14 12 39 39 H 1.09004 * 109.78673 * 350.96691 * 15 14 12 40 40 H 1.09001 * 109.49710 * 186.20621 * 16 15 14 41 41 H 1.09006 * 109.49118 * 66.12586 * 16 15 14 42 42 H 1.09001 * 109.47343 * 50.00200 * 18 17 16 43 43 H 1.08998 * 109.47239 * 289.99774 * 18 17 16 44 44 H 0.97002 * 119.99585 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.49164 * 56.85652 * 27 17 16 46 46 H 1.08997 * 109.49200 * 176.93769 * 27 17 16 47 47 H 1.09008 * 109.63298 * 248.54636 * 28 14 12 48 48 H 1.09000 * 109.62770 * 9.12445 * 28 14 12 49 49 H 1.08999 * 110.49119 * 95.07020 * 29 7 6 50 50 H 1.09004 * 110.48297 * 217.71490 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3748 2.0096 0.5372 5 6 2.2670 1.7920 -1.4479 6 6 3.3858 2.8439 -1.3006 7 6 4.1280 2.5162 0.0068 8 1 5.1743 2.2943 -0.2033 9 7 4.0315 3.6454 0.9352 10 6 4.9278 4.6498 0.8700 11 8 5.8150 4.6187 0.0427 12 6 4.8297 5.8014 1.8175 13 8 4.0184 5.7776 2.7195 14 7 5.6424 6.8664 1.6701 15 6 5.5397 8.0248 2.5704 16 6 5.4324 9.2948 1.7195 17 7 6.5543 9.3419 0.7724 18 6 6.5855 10.6244 0.0567 19 6 7.8741 10.7368 -0.7167 20 1 8.5973 9.9354 -0.6805 21 6 8.1298 11.8627 -1.4704 22 7 9.2545 11.9609 -2.1450 23 14 6.8786 13.2484 -1.5335 24 1 7.1581 14.2176 -0.4437 25 1 6.9701 13.9385 -2.8452 26 1 5.5132 12.6905 -1.3617 27 6 6.5049 8.2150 -0.1687 28 6 6.6560 6.9008 0.6049 29 6 3.4339 1.2770 0.6088 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.3676 2.2473 -1.8625 34 1 2.6001 0.9663 -2.0765 35 1 2.9539 3.8431 -1.2445 36 1 4.0719 2.7810 -2.1454 37 1 3.3226 3.6701 1.5968 38 1 6.4281 8.0796 3.1996 39 1 4.6529 7.9278 3.1968 40 1 5.4664 10.1707 2.3674 41 1 4.4917 9.2853 1.1689 42 1 6.5198 11.4425 0.7740 43 1 5.7425 10.6767 -0.6323 44 1 9.4345 12.7532 -2.6749 45 1 5.5493 8.2206 -0.6930 46 1 7.3166 8.3078 -0.8902 47 1 7.6519 6.8475 1.0450 48 1 6.5058 6.0588 -0.0708 49 1 3.9559 0.3666 0.3143 50 1 3.3865 1.3564 1.6949 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261968583.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:46 Heat of formation + Delta-G solvation = -107.815935 kcal Electronic energy + Delta-G solvation = -30109.895295 eV Core-core repulsion = 25944.143355 eV Total energy + Delta-G solvation = -4165.751941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.15808 -40.55684 -39.53263 -39.03903 -37.52939 -36.08373 -34.53778 -34.17259 -32.22748 -30.62422 -29.85565 -29.00475 -27.73103 -26.88216 -25.40764 -24.68986 -23.22615 -22.11679 -21.79222 -21.37831 -20.69222 -18.96602 -18.80919 -18.26739 -17.74827 -17.27925 -17.08557 -16.77678 -16.54361 -16.15753 -16.05399 -15.82415 -15.73939 -15.49910 -15.32445 -15.03746 -14.55954 -14.49626 -14.43118 -14.19800 -13.87083 -13.69705 -13.27712 -13.10258 -12.99652 -12.80292 -12.60456 -12.48293 -12.30353 -12.28036 -12.24729 -12.12097 -11.92110 -11.88871 -11.86175 -11.55637 -11.43186 -10.78027 -10.56367 -10.33656 -10.22700 -9.93925 -9.09605 -8.27920 -6.31421 0.25078 1.19281 1.34893 1.36068 1.46287 2.03125 2.33288 2.34769 2.76634 3.04182 3.15118 3.18372 3.46537 3.54326 3.91321 4.00384 4.01462 4.17264 4.22586 4.25467 4.29025 4.36746 4.36932 4.47343 4.51271 4.55640 4.57971 4.60460 4.67904 4.77035 4.79808 4.84986 4.90415 4.90828 4.98694 5.01873 5.05303 5.08933 5.15575 5.20354 5.23945 5.45793 5.52746 5.86126 5.97586 6.15920 6.27550 6.27744 6.59686 6.61561 6.74764 6.86700 7.31912 8.88293 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.002178 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.649343 B =12855.693446 C =13347.620851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.078 3.922 4 H 0.079 0.921 5 C -0.140 4.140 6 C -0.132 4.132 7 C 0.140 3.860 8 H 0.097 0.903 9 N -0.678 5.678 10 C 0.514 3.486 11 O -0.521 6.521 12 C 0.505 3.495 13 O -0.545 6.545 14 N -0.576 5.576 15 C 0.118 3.882 16 C 0.040 3.960 17 N -0.542 5.542 18 C 0.171 3.829 19 C -0.516 4.516 20 H 0.041 0.959 21 C 0.008 3.992 22 N -0.946 5.946 23 Si 0.947 3.053 24 H -0.264 1.264 25 H -0.283 1.283 26 H -0.254 1.254 27 C 0.056 3.944 28 C 0.073 3.927 29 C -0.119 4.119 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.419 0.581 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.027 0.973 42 H 0.034 0.966 43 H -0.015 1.015 44 H 0.267 0.733 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.158 0.842 49 H 0.099 0.901 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 -23.198 6.848 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.021 3.979 4 H 0.097 0.903 5 C -0.178 4.178 6 C -0.170 4.170 7 C 0.036 3.964 8 H 0.115 0.885 9 N -0.331 5.331 10 C 0.296 3.704 11 O -0.400 6.400 12 C 0.288 3.712 13 O -0.423 6.423 14 N -0.308 5.308 15 C -0.004 4.004 16 C -0.089 4.089 17 N -0.266 5.266 18 C 0.044 3.956 19 C -0.554 4.554 20 H 0.060 0.940 21 C -0.189 4.189 22 N -0.586 5.586 23 Si 0.770 3.230 24 H -0.188 1.188 25 H -0.209 1.209 26 H -0.178 1.178 27 C -0.073 4.073 28 C -0.048 4.048 29 C -0.156 4.156 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.257 0.743 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.003 0.997 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.174 0.826 49 H 0.118 0.882 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.336 -23.343 6.900 30.475 hybrid contribution -1.058 1.476 -0.652 1.929 sum -19.394 -21.868 6.247 29.889 Atomic orbital electron populations 1.22947 0.79782 1.03740 1.00724 1.87867 1.21121 1.27813 1.95037 1.23236 0.94503 0.84558 0.95653 0.90306 1.22809 0.98657 0.98712 0.97610 1.22499 0.97862 0.99392 0.97284 1.21761 1.01690 0.84323 0.88583 0.88514 1.45953 1.30389 1.20031 1.36734 1.20047 0.82548 0.83996 0.83851 1.90380 1.34739 1.76488 1.38367 1.20171 0.81452 0.84114 0.85495 1.90714 1.37203 1.80317 1.34100 1.48211 1.33961 1.16674 1.31999 1.21909 1.04278 0.82422 0.91754 1.22541 0.91713 0.98938 0.95706 1.61858 1.42624 1.03149 1.19002 1.19950 0.94712 0.88360 0.92534 1.21234 1.03117 1.03858 1.27197 0.94041 1.25830 0.97331 1.01057 0.94706 1.70049 1.26239 1.30145 1.32204 0.85724 0.80044 0.79207 0.77984 1.18845 1.20883 1.17792 1.22299 0.99924 0.90433 0.94616 1.23284 0.90917 1.00261 0.90384 1.22626 0.94436 0.97236 1.01342 0.93174 0.93455 0.88643 0.90775 0.90312 0.91672 0.90418 0.74286 0.89512 0.87520 0.88303 0.95442 0.94788 0.99726 0.92441 0.96112 0.90856 0.90997 0.82635 0.88240 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.88 113.37 1.23 1.44 16 2 O -0.40 -5.47 10.50 -148.98 -1.56 -7.04 16 3 C 0.08 0.88 3.34 31.88 0.11 0.99 16 4 H 0.08 0.76 7.88 -2.39 -0.02 0.74 16 5 C -0.14 -1.62 6.55 31.67 0.21 -1.41 16 6 C -0.13 -1.86 6.58 31.32 0.21 -1.65 16 7 C 0.14 1.97 3.23 45.71 0.15 2.12 16 8 H 0.10 1.56 7.61 -2.39 -0.02 1.54 16 9 N -0.68 -11.38 4.93 -440.45 -2.17 -13.55 16 10 C 0.51 12.20 7.80 87.27 0.68 12.88 16 11 O -0.52 -14.42 12.71 -3.26 -0.04 -14.47 16 12 C 0.50 13.66 7.77 87.27 0.68 14.34 16 13 O -0.54 -15.51 15.96 -3.23 -0.05 -15.56 16 14 N -0.58 -16.86 3.01 -819.52 -2.47 -19.33 16 15 C 0.12 3.26 6.59 86.35 0.57 3.83 16 16 C 0.04 1.26 5.62 86.38 0.49 1.75 16 17 N -0.54 -22.05 4.62 -899.81 -4.16 -26.21 16 18 C 0.17 8.12 3.79 85.56 0.32 8.44 16 19 C -0.52 -29.52 8.96 25.60 0.23 -29.29 16 20 H 0.04 2.64 7.37 -2.91 -0.02 2.62 16 21 C 0.01 0.48 5.47 84.65 0.46 0.94 16 22 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 23 Si 0.95 43.74 27.47 68.60 1.88 45.62 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 27 C 0.06 2.18 5.46 86.38 0.47 2.65 16 28 C 0.07 2.33 6.36 86.35 0.55 2.88 16 29 C -0.12 -1.27 6.16 31.66 0.20 -1.08 16 30 H 0.05 0.35 8.11 -2.39 -0.02 0.33 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.05 7.92 -2.39 -0.02 1.03 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.42 5.87 8.04 -92.70 -0.75 5.12 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.11 2.65 7.08 -2.38 -0.02 2.63 16 40 H 0.10 2.85 7.99 -2.39 -0.02 2.83 16 41 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.03 1.56 7.40 -2.39 -0.02 1.54 16 43 H -0.01 -0.72 7.18 -2.39 -0.02 -0.73 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 3.27 6.67 -2.39 -0.02 3.25 16 47 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.16 4.90 3.92 -75.33 -0.30 4.60 16 49 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 0.85 7.97 -2.39 -0.02 0.83 16 Total: -1.00 -69.72 393.33 -1.87 -71.58 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.14 Total: 18.63 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.55 Total: 18.82 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -8.50 Total: -117.60 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.66 Total: -37.06 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -69.72 -1.87 -71.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261968583.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.233 kcal (2) G-P(sol) polarization free energy of solvation -69.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds