Wall clock time and date at job start Sat Apr 11 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47057 * 125.40954 * 2 1 4 4 C 1.54103 * 103.86505 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.54980 * 241.26398 * 4 3 2 6 6 C 1.50697 * 110.54755 * 118.59398 * 4 3 2 7 7 O 1.21290 * 120.00170 * 259.99834 * 6 4 3 8 8 N 1.34770 * 120.00238 * 80.00278 * 6 4 3 9 9 C 1.46498 * 120.00232 * 180.27424 * 8 6 4 10 10 C 1.53005 * 109.46986 * 179.72585 * 9 8 6 11 11 C 1.52998 * 109.47003 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.47328 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99923 * 294.30461 * 12 11 10 14 14 C 1.53240 * 109.33721 * 172.74346 * 13 12 11 15 15 N 1.47076 * 108.51979 * 53.83316 * 14 13 12 16 16 C 1.36933 * 120.88317 * 128.83768 * 15 14 13 17 17 H 1.07999 * 120.00218 * 206.61614 * 16 15 14 18 18 C 1.38815 * 120.00072 * 26.61100 * 16 15 14 19 19 N 1.31615 * 119.99759 * 17.05776 * 18 16 15 20 20 Si 1.86806 * 120.00209 * 197.05369 * 18 16 15 21 21 H 1.48499 * 109.46752 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47019 * 120.00005 * 20 18 16 23 23 H 1.48500 * 109.47278 * 240.00204 * 20 18 16 24 24 C 1.47088 * 118.23866 * 308.80890 * 15 14 13 25 25 C 1.46895 * 111.00246 * 170.00141 * 12 11 10 26 26 N 1.47052 * 103.85793 * 0.02562 * 4 3 2 27 27 C 1.33944 * 109.18681 * 359.97438 * 26 4 3 28 28 O 1.21588 * 123.04676 * 180.02562 * 27 26 4 29 29 H 1.09007 * 109.47131 * 90.00250 * 1 2 3 30 30 H 1.09002 * 109.47251 * 209.99902 * 1 2 3 31 31 H 1.08997 * 109.47581 * 330.00083 * 1 2 3 32 32 H 1.09000 * 110.54784 * 61.40424 * 3 2 1 33 33 H 1.09004 * 110.54907 * 298.59821 * 3 2 1 34 34 H 0.97007 * 119.99644 * 0.02562 * 8 6 4 35 35 H 1.09002 * 109.47098 * 299.71957 * 9 8 6 36 36 H 1.08995 * 109.47094 * 59.72384 * 9 8 6 37 37 H 1.08994 * 109.46903 * 299.99816 * 10 9 8 38 38 H 1.09003 * 109.47284 * 60.00321 * 10 9 8 39 39 H 1.08999 * 109.47420 * 300.00232 * 11 10 9 40 40 H 1.09004 * 109.47467 * 59.99694 * 11 10 9 41 41 H 1.08999 * 109.48671 * 292.70501 * 13 12 11 42 42 H 1.08997 * 109.49113 * 52.78047 * 13 12 11 43 43 H 1.08993 * 109.63148 * 294.11733 * 14 13 12 44 44 H 1.09004 * 109.78086 * 173.63026 * 14 13 12 45 45 H 0.97006 * 119.99787 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.62502 * 291.48353 * 24 15 14 47 47 H 1.08994 * 109.79056 * 170.99351 * 24 15 14 48 48 H 1.08999 * 109.49644 * 307.21504 * 25 12 11 49 49 H 1.09001 * 109.49465 * 67.29384 * 25 12 11 50 50 H 0.97008 * 125.40740 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7504 0.6327 0.0007 5 1 4.2861 0.9488 0.8957 6 6 4.4908 1.0663 -1.2382 7 8 4.6031 0.3046 -2.1754 8 7 5.0284 2.3003 -1.3047 9 6 5.7430 2.7240 -2.5113 10 6 6.2440 4.1583 -2.3302 11 6 6.9909 4.6005 -3.5902 12 7 7.4714 5.9778 -3.4166 13 6 6.3477 6.9191 -3.3191 14 6 6.8806 8.3100 -2.9591 15 7 7.9185 8.6793 -3.9337 16 6 7.8730 9.8817 -4.5872 17 1 8.3336 9.9862 -5.5585 18 6 7.2348 10.9664 -4.0015 19 7 6.9718 10.9574 -2.7119 20 14 6.7493 12.4388 -5.0435 21 1 7.1533 12.2026 -6.4528 22 1 5.2781 12.6294 -4.9761 23 1 7.4299 13.6547 -4.5300 24 6 9.0069 7.7230 -4.1872 25 6 8.3903 6.3552 -4.4987 26 7 3.5537 -0.8247 0.0003 27 6 2.2412 -1.0917 0.0002 28 8 1.7946 -2.2226 0.0003 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.1406 1.7934 0.8962 33 1 2.1405 1.7935 -0.8962 34 1 4.9390 2.9093 -0.5549 35 1 6.5917 2.0617 -2.6824 36 1 5.0693 2.6798 -3.3670 37 1 5.3955 4.8206 -2.1591 38 1 6.9179 4.2025 -1.4746 39 1 7.8395 3.9381 -3.7609 40 1 6.3175 4.5562 -4.4462 41 1 5.8279 6.9651 -4.2761 42 1 5.6574 6.5826 -2.5456 43 1 7.3095 8.2898 -1.9573 44 1 6.0691 9.0368 -2.9955 45 1 6.5261 11.7155 -2.3025 46 1 9.6402 7.6463 -3.3033 47 1 9.6024 8.0582 -5.0363 48 1 9.1814 5.6098 -4.5807 49 1 7.8420 6.4091 -5.4392 50 1 4.2621 -1.4874 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266269883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:22 Heat of formation + Delta-G solvation = -10.090481 kcal Electronic energy + Delta-G solvation = -29192.832294 eV Core-core repulsion = 25063.610797 eV Total energy + Delta-G solvation = -4129.221496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77932 -39.69934 -38.33127 -36.66000 -35.95358 -34.54631 -34.45092 -32.24359 -30.83883 -29.97759 -29.68953 -27.79078 -26.81519 -24.96312 -23.85165 -22.94161 -22.41799 -21.35893 -20.99326 -20.64671 -19.14517 -18.24830 -18.03226 -16.97642 -16.78760 -16.34135 -15.99246 -15.86692 -15.14941 -14.99870 -14.72508 -14.51101 -14.44843 -14.21887 -14.05672 -13.89576 -13.74845 -13.47204 -13.21070 -13.07149 -12.93567 -12.85383 -12.51406 -12.18883 -11.91359 -11.65896 -11.37858 -11.09954 -10.96272 -10.77995 -10.73024 -10.56050 -10.42719 -10.32586 -10.08000 -9.78215 -9.69449 -9.62276 -9.47093 -9.07627 -8.55037 -7.88847 -6.70605 -5.82347 -3.23103 1.92809 2.19656 2.46627 2.86797 3.33685 3.41904 3.41943 3.44030 3.71273 4.07109 4.23304 4.24304 4.46748 4.51318 4.76060 4.81974 4.86191 4.96989 5.07906 5.09490 5.27349 5.34189 5.38056 5.40891 5.43000 5.51993 5.63844 5.83147 5.89211 5.92160 6.03528 6.11155 6.12440 6.17519 6.19072 6.30141 6.49950 6.63657 6.64689 6.89068 6.96418 7.05020 7.19833 7.54660 7.59119 7.66084 7.71867 7.78176 8.17110 8.39550 9.17575 9.80871 10.39205 11.26543 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.001738 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.011645 B =16110.501059 C =17044.617620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.104 3.896 5 H 0.119 0.881 6 C 0.500 3.500 7 O -0.522 6.522 8 N -0.722 5.722 9 C 0.120 3.880 10 C -0.128 4.128 11 C 0.058 3.942 12 N -0.533 5.533 13 C 0.033 3.967 14 C 0.177 3.823 15 N -0.596 5.596 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.148 3.852 25 C 0.045 3.955 26 N -0.715 5.715 27 C 0.704 3.296 28 O -0.581 6.581 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.088 0.912 45 H 0.253 0.747 46 H 0.025 0.975 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.027 0.973 50 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 -18.380 8.149 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.377 5.377 3 C -0.019 4.019 4 C -0.007 4.007 5 H 0.137 0.863 6 C 0.283 3.717 7 O -0.397 6.397 8 N -0.374 5.374 9 C -0.004 4.004 10 C -0.166 4.166 11 C -0.071 4.071 12 N -0.258 5.258 13 C -0.096 4.096 14 C 0.051 3.949 15 N -0.319 5.319 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.022 3.978 25 C -0.085 4.085 26 N -0.377 5.377 27 C 0.405 3.595 28 O -0.458 6.458 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -8.370 -19.338 7.965 22.526 hybrid contribution -0.323 1.009 -0.944 1.419 sum -8.693 -18.329 7.022 21.467 Atomic orbital electron populations 1.21423 0.75144 1.03350 1.02162 1.47010 1.06532 1.05484 1.78670 1.22303 0.86138 0.89179 1.04282 1.21840 0.97282 0.83593 0.97935 0.86329 1.20748 0.79664 0.82223 0.89103 1.90778 1.58211 1.52679 1.37990 1.46009 1.56352 1.15123 1.19950 1.21405 0.96324 0.95897 0.86737 1.21801 1.00976 0.93734 1.00080 1.21938 0.98176 0.91672 0.95325 1.61953 1.17770 1.00668 1.45398 1.22951 0.91848 0.95857 0.98950 1.20861 0.92807 0.89819 0.91380 1.44127 1.23152 1.16083 1.48530 1.19243 1.33705 0.86866 0.98193 0.91608 1.25023 1.02377 0.97234 0.95177 1.70037 1.45253 1.30965 1.08594 0.86230 0.78078 0.82659 0.79861 1.20317 1.21587 1.21701 1.20975 0.90796 0.87754 0.98321 1.22610 0.95202 0.99034 0.91612 1.44824 1.07027 1.06055 1.79765 1.15808 0.81644 0.84676 0.77421 1.90974 1.75778 1.20892 1.58182 0.92514 0.90231 0.90649 0.88460 0.89482 0.76120 0.91205 0.91412 0.90881 0.90241 0.91179 0.95325 0.95773 0.91993 0.95641 0.89386 0.93693 0.95679 0.92624 0.92019 0.95431 0.72294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.70 11.03 59.85 0.66 1.36 16 2 N -0.64 -5.11 3.36 -186.73 -0.63 -5.74 16 3 C 0.11 0.50 7.32 -3.16 -0.02 0.48 16 4 C 0.10 0.58 4.17 -68.21 -0.28 0.30 16 5 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 6 C 0.50 4.16 6.95 -10.99 -0.08 4.09 16 7 O -0.52 -6.90 16.56 5.55 0.09 -6.81 16 8 N -0.72 -4.68 5.56 -60.29 -0.33 -5.02 16 9 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 10 C -0.13 -1.20 5.26 -26.73 -0.14 -1.34 16 11 C 0.06 0.71 4.96 -3.83 -0.02 0.69 16 12 N -0.53 -8.67 4.63 -234.32 -1.08 -9.76 16 13 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 14 C 0.18 4.10 5.42 -3.60 -0.02 4.08 16 15 N -0.60 -14.71 3.04 -172.02 -0.52 -15.23 16 16 C -0.25 -6.77 9.63 -15.06 -0.15 -6.92 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 19 N -0.90 -25.64 11.15 55.49 0.62 -25.02 16 20 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.15 3.06 6.69 -3.60 -0.02 3.04 16 25 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 26 N -0.72 -6.13 5.60 -59.33 -0.33 -6.47 16 27 C 0.70 7.94 8.60 -88.40 -0.76 7.18 16 28 O -0.58 -8.94 17.53 5.29 0.09 -8.85 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.53 7.91 -51.93 -0.41 0.11 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.41 7.73 -51.93 -0.40 0.01 16 34 H 0.40 1.45 8.47 -40.82 -0.35 1.10 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.70 6.40 -51.93 -0.33 0.37 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.79 7.97 -51.93 -0.41 0.38 16 40 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.96 6.16 -51.93 -0.32 0.64 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.26 6.11 -51.93 -0.32 1.95 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.11 7.96 -51.93 -0.41 0.69 16 48 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.43 3.41 8.96 -40.82 -0.37 3.05 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -36.79 399.61 -10.45 -47.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.36 Total: -1.81 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -0.98 Total: 15.20 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -2.28 Total: -67.23 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.18 Total: -15.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.79 -10.45 -47.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266269883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.146 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds