Wall clock time and date at job start Sat Apr 11 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47057 * 125.40954 * 2 1 4 4 C 1.54103 * 103.86505 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.54980 * 241.26398 * 4 3 2 6 6 C 1.50697 * 110.54755 * 118.59398 * 4 3 2 7 7 O 1.21290 * 120.00170 * 259.99834 * 6 4 3 8 8 N 1.34770 * 120.00238 * 80.00278 * 6 4 3 9 9 C 1.46498 * 120.00232 * 180.27424 * 8 6 4 10 10 C 1.53005 * 109.46986 * 179.72585 * 9 8 6 11 11 C 1.52998 * 109.47003 * 179.97438 * 10 9 8 12 12 N 1.46900 * 109.47328 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99923 * 294.30461 * 12 11 10 14 14 C 1.53240 * 109.33721 * 172.74346 * 13 12 11 15 15 N 1.47076 * 108.51979 * 53.83316 * 14 13 12 16 16 C 1.36933 * 120.88317 * 128.83768 * 15 14 13 17 17 H 1.07999 * 120.00218 * 206.61614 * 16 15 14 18 18 C 1.38815 * 120.00072 * 26.61100 * 16 15 14 19 19 N 1.31615 * 119.99759 * 17.05776 * 18 16 15 20 20 Si 1.86806 * 120.00209 * 197.05369 * 18 16 15 21 21 H 1.48499 * 109.46752 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47019 * 120.00005 * 20 18 16 23 23 H 1.48500 * 109.47278 * 240.00204 * 20 18 16 24 24 C 1.47088 * 118.23866 * 308.80890 * 15 14 13 25 25 C 1.46895 * 111.00246 * 170.00141 * 12 11 10 26 26 N 1.47052 * 103.85793 * 0.02562 * 4 3 2 27 27 C 1.33944 * 109.18681 * 359.97438 * 26 4 3 28 28 O 1.21588 * 123.04676 * 180.02562 * 27 26 4 29 29 H 1.09007 * 109.47131 * 90.00250 * 1 2 3 30 30 H 1.09002 * 109.47251 * 209.99902 * 1 2 3 31 31 H 1.08997 * 109.47581 * 330.00083 * 1 2 3 32 32 H 1.09000 * 110.54784 * 61.40424 * 3 2 1 33 33 H 1.09004 * 110.54907 * 298.59821 * 3 2 1 34 34 H 0.97007 * 119.99644 * 0.02562 * 8 6 4 35 35 H 1.09002 * 109.47098 * 299.71957 * 9 8 6 36 36 H 1.08995 * 109.47094 * 59.72384 * 9 8 6 37 37 H 1.08994 * 109.46903 * 299.99816 * 10 9 8 38 38 H 1.09003 * 109.47284 * 60.00321 * 10 9 8 39 39 H 1.08999 * 109.47420 * 300.00232 * 11 10 9 40 40 H 1.09004 * 109.47467 * 59.99694 * 11 10 9 41 41 H 1.08999 * 109.48671 * 292.70501 * 13 12 11 42 42 H 1.08997 * 109.49113 * 52.78047 * 13 12 11 43 43 H 1.08993 * 109.63148 * 294.11733 * 14 13 12 44 44 H 1.09004 * 109.78086 * 173.63026 * 14 13 12 45 45 H 0.97006 * 119.99787 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.62502 * 291.48353 * 24 15 14 47 47 H 1.08994 * 109.79056 * 170.99351 * 24 15 14 48 48 H 1.08999 * 109.49644 * 307.21504 * 25 12 11 49 49 H 1.09001 * 109.49465 * 67.29384 * 25 12 11 50 50 H 0.97008 * 125.40740 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1986 0.0000 4 6 3.7504 0.6327 0.0007 5 1 4.2861 0.9488 0.8957 6 6 4.4908 1.0663 -1.2382 7 8 4.6031 0.3046 -2.1754 8 7 5.0284 2.3003 -1.3047 9 6 5.7430 2.7240 -2.5113 10 6 6.2440 4.1583 -2.3302 11 6 6.9909 4.6005 -3.5902 12 7 7.4714 5.9778 -3.4166 13 6 6.3477 6.9191 -3.3191 14 6 6.8806 8.3100 -2.9591 15 7 7.9185 8.6793 -3.9337 16 6 7.8730 9.8817 -4.5872 17 1 8.3336 9.9862 -5.5585 18 6 7.2348 10.9664 -4.0015 19 7 6.9718 10.9574 -2.7119 20 14 6.7493 12.4388 -5.0435 21 1 7.1533 12.2026 -6.4528 22 1 5.2781 12.6294 -4.9761 23 1 7.4299 13.6547 -4.5300 24 6 9.0069 7.7230 -4.1872 25 6 8.3903 6.3552 -4.4987 26 7 3.5537 -0.8247 0.0003 27 6 2.2412 -1.0917 0.0002 28 8 1.7946 -2.2226 0.0003 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.1406 1.7934 0.8962 33 1 2.1405 1.7935 -0.8962 34 1 4.9390 2.9093 -0.5549 35 1 6.5917 2.0617 -2.6824 36 1 5.0693 2.6798 -3.3670 37 1 5.3955 4.8206 -2.1591 38 1 6.9179 4.2025 -1.4746 39 1 7.8395 3.9381 -3.7609 40 1 6.3175 4.5562 -4.4462 41 1 5.8279 6.9651 -4.2761 42 1 5.6574 6.5826 -2.5456 43 1 7.3095 8.2898 -1.9573 44 1 6.0691 9.0368 -2.9955 45 1 6.5261 11.7155 -2.3025 46 1 9.6402 7.6463 -3.3033 47 1 9.6024 8.0582 -5.0363 48 1 9.1814 5.6098 -4.5807 49 1 7.8420 6.4091 -5.4392 50 1 4.2621 -1.4874 0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266269883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:22 Heat of formation + Delta-G solvation = -40.535780 kcal Electronic energy + Delta-G solvation = -29194.152501 eV Core-core repulsion = 25063.610797 eV Total energy + Delta-G solvation = -4130.541703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.41284 -40.43865 -39.72397 -37.49232 -36.99826 -35.84220 -35.09456 -33.68276 -32.16081 -31.60515 -30.40119 -28.60658 -28.01406 -26.08201 -24.85837 -24.33124 -23.81209 -22.21145 -21.65056 -21.44188 -20.78419 -18.92367 -18.71074 -18.60388 -17.56607 -17.12629 -16.96744 -16.71640 -16.51006 -16.05462 -15.88385 -15.46575 -15.30719 -15.30300 -15.15041 -15.13621 -14.91525 -14.60514 -14.49666 -14.40627 -13.59216 -13.36638 -13.30674 -13.22653 -12.96238 -12.90384 -12.78527 -12.63427 -12.50113 -12.27023 -12.04236 -11.92820 -11.74825 -11.57301 -11.46203 -11.39536 -11.23152 -10.58136 -10.43500 -10.13965 -9.60186 -9.23559 -8.65967 -7.87066 -5.30898 1.32961 1.46077 1.48266 1.58419 1.59281 1.82872 2.15759 2.51216 2.89997 3.04160 3.27247 3.28296 3.56646 3.71151 3.90227 3.99734 4.09708 4.12418 4.22162 4.36944 4.41077 4.48641 4.51371 4.53947 4.65084 4.68021 4.70250 4.71491 4.73500 4.84041 4.86804 4.91915 4.95032 5.06644 5.18768 5.25286 5.28504 5.40414 5.43118 5.60200 5.62653 5.72865 6.00224 6.21438 6.31744 6.33052 6.39383 6.51390 7.15220 7.15674 7.42056 7.85957 8.39322 9.19630 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.001738 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.011645 B =16110.501059 C =17044.617620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.638 5.638 3 C 0.103 3.897 4 C 0.109 3.891 5 H 0.165 0.835 6 C 0.501 3.499 7 O -0.577 6.577 8 N -0.705 5.705 9 C 0.128 3.872 10 C -0.114 4.114 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.050 3.950 14 C 0.183 3.817 15 N -0.616 5.616 16 C -0.263 4.263 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.292 1.292 24 C 0.143 3.857 25 C 0.055 3.945 26 N -0.716 5.716 27 C 0.689 3.311 28 O -0.636 6.636 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.422 0.578 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.028 0.972 41 H 0.013 0.987 42 H 0.092 0.908 43 H 0.001 0.999 44 H 0.056 0.944 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.057 0.943 48 H 0.094 0.906 49 H 0.020 0.980 50 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 -18.194 8.778 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.377 5.377 3 C -0.020 4.020 4 C -0.001 4.001 5 H 0.182 0.818 6 C 0.285 3.715 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.004 3.996 10 C -0.152 4.152 11 C -0.071 4.071 12 N -0.264 5.264 13 C -0.079 4.079 14 C 0.057 3.943 15 N -0.340 5.340 16 C -0.393 4.393 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.219 1.219 24 C 0.017 3.983 25 C -0.075 4.075 26 N -0.376 5.376 27 C 0.389 3.611 28 O -0.518 6.518 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.159 0.841 33 H 0.108 0.892 34 H 0.260 0.740 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.110 0.890 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.112 0.888 49 H 0.038 0.962 50 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -8.561 -19.101 8.612 22.634 hybrid contribution -0.175 0.967 -1.149 1.512 sum -8.736 -18.134 7.463 21.467 Atomic orbital electron populations 1.21593 0.74216 1.04419 1.02343 1.47213 1.07325 1.05669 1.77444 1.22650 0.84630 0.88132 1.06559 1.22156 0.98176 0.81694 0.98050 0.81755 1.21236 0.79079 0.81933 0.89211 1.90766 1.60418 1.54281 1.40129 1.45829 1.55177 1.14916 1.19885 1.21181 0.96023 0.95212 0.87198 1.21643 1.00771 0.93970 0.98799 1.22040 0.99095 0.89166 0.96790 1.61904 1.17113 1.02217 1.45171 1.22630 0.92482 0.93571 0.99216 1.20659 0.91430 0.92092 0.90071 1.44425 1.24770 1.16220 1.48577 1.19541 1.33403 0.88029 0.98364 0.91785 1.25753 1.02798 0.99852 0.96203 1.70180 1.46156 1.31626 1.09981 0.85231 0.77430 0.79246 0.78667 1.19419 1.21474 1.21912 1.21126 0.90134 0.89047 0.97979 1.22449 0.96086 0.97554 0.91379 1.44877 1.06189 1.07689 1.78814 1.16209 0.82653 0.84732 0.77485 1.90917 1.76910 1.23236 1.60763 0.92816 0.91669 0.87063 0.84111 0.89202 0.73977 0.91780 0.92574 0.90625 0.89575 0.89707 0.95414 0.96862 0.89039 0.98084 0.92606 0.94018 0.96455 0.92482 0.88798 0.96190 0.72354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.19 11.03 127.77 1.41 2.60 16 2 N -0.64 -9.18 3.36 -863.42 -2.90 -12.08 16 3 C 0.10 0.62 7.32 86.65 0.63 1.25 16 4 C 0.11 0.88 4.17 44.51 0.19 1.07 16 5 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 6 C 0.50 7.19 6.95 87.66 0.61 7.80 16 7 O -0.58 -14.86 16.56 -3.06 -0.05 -14.91 16 8 N -0.70 -6.85 5.56 -463.06 -2.57 -9.42 16 9 C 0.13 1.84 5.67 86.38 0.49 2.33 16 10 C -0.11 -1.74 5.26 30.60 0.16 -1.58 16 11 C 0.06 1.23 4.96 86.30 0.43 1.66 16 12 N -0.54 -16.31 4.63 -895.26 -4.14 -20.45 16 13 C 0.05 1.74 5.46 86.38 0.47 2.22 16 14 C 0.18 8.56 5.42 86.35 0.47 9.03 16 15 N -0.62 -30.67 3.04 -698.14 -2.12 -32.79 16 16 C -0.26 -14.38 9.63 84.03 0.81 -13.57 16 17 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 18 C -0.05 -2.79 4.93 84.86 0.42 -2.37 16 19 N -0.93 -54.00 11.15 21.65 0.24 -53.76 16 20 Si 0.97 44.11 29.59 68.60 2.03 46.14 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 C 0.14 5.83 6.69 86.35 0.58 6.41 16 25 C 0.05 1.76 5.62 86.38 0.49 2.25 16 26 N -0.72 -11.56 5.60 -460.36 -2.58 -14.14 16 27 C 0.69 15.41 8.60 179.57 1.55 16.95 16 28 O -0.64 -20.46 17.53 -3.99 -0.07 -20.53 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.86 7.91 -2.39 -0.02 0.85 16 31 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.14 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.09 0.54 7.73 -2.39 -0.02 0.52 16 34 H 0.42 1.15 8.47 -92.70 -0.79 0.37 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.16 6.40 -2.39 -0.02 1.14 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.61 7.97 -2.39 -0.02 1.59 16 40 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 2.62 6.16 -2.39 -0.01 2.60 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.06 2.94 6.11 -2.38 -0.01 2.93 16 45 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16 48 H 0.09 2.44 7.99 -2.39 -0.02 2.42 16 49 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.43 6.74 8.96 -92.70 -0.83 5.90 16 Total: -1.00 -84.53 399.61 -4.13 -88.66 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -0.66 Total: 7.25 kcal Atomic # 6 Polarization: 27.33 SS G_CDS: 8.69 Total: 36.03 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -14.07 Total: -142.65 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.12 Total: -35.44 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -84.53 -4.13 -88.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266269883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.128 kcal (2) G-P(sol) polarization free energy of solvation -84.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds