Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 114.00101 * 2 1 4 4 H 1.09005 * 109.46910 * 29.99619 * 3 2 1 5 5 C 1.50700 * 109.46951 * 270.00494 * 3 2 1 6 6 O 1.21279 * 120.00137 * 354.99252 * 5 3 2 7 7 N 1.34782 * 119.99880 * 175.00137 * 5 3 2 8 8 C 1.46501 * 119.99857 * 179.97438 * 7 5 3 9 9 H 1.08997 * 110.27688 * 32.90418 * 8 7 5 10 10 C 1.54604 * 110.30632 * 270.71305 * 8 7 5 11 11 C 1.54936 * 102.92029 * 219.12682 * 10 8 7 12 12 N 1.48534 * 103.22679 * 37.41360 * 11 10 8 13 13 C 1.46896 * 110.99954 * 200.27540 * 12 11 10 14 14 C 1.50693 * 109.47648 * 287.39910 * 13 12 11 15 15 O 1.21297 * 119.99539 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00240 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99904 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00536 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99924 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00173 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99907 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47385 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99846 * 21 19 17 24 24 H 1.48501 * 109.46906 * 239.99855 * 21 19 17 25 25 C 1.47903 * 105.82292 * 320.79564 * 12 11 10 26 26 C 1.52995 * 109.47309 * 150.00059 * 3 2 1 27 27 C 1.53785 * 113.69093 * 200.93734 * 26 3 2 28 28 C 1.53779 * 87.08093 * 139.99088 * 27 26 3 29 29 C 1.53781 * 113.61293 * 298.47359 * 26 3 2 30 30 H 1.09002 * 109.46746 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46727 * 299.99897 * 1 2 3 32 32 H 1.09003 * 109.46880 * 60.00046 * 1 2 3 33 33 H 0.96995 * 120.00066 * 359.97438 * 7 5 3 34 34 H 1.09004 * 110.72183 * 337.48527 * 10 8 7 35 35 H 1.08999 * 110.72271 * 100.76925 * 10 8 7 36 36 H 1.09000 * 110.66519 * 278.98009 * 11 10 8 37 37 H 1.09000 * 110.66534 * 155.85046 * 11 10 8 38 38 H 1.09000 * 109.47290 * 47.40340 * 13 12 11 39 39 H 1.09000 * 109.46912 * 167.39902 * 13 12 11 40 40 H 0.97000 * 120.00616 * 359.97438 * 16 14 13 41 41 H 0.97001 * 120.00519 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.91199 * 265.97780 * 25 12 11 43 43 H 1.08992 * 110.08337 * 144.77665 * 25 12 11 44 44 H 1.09002 * 112.85043 * 69.66617 * 26 3 2 45 45 H 1.09003 * 113.60734 * 254.54208 * 27 26 3 46 46 H 1.08996 * 113.61146 * 25.43706 * 27 26 3 47 47 H 1.08994 * 113.61314 * 220.01752 * 28 27 26 48 48 H 1.09003 * 113.61186 * 89.11185 * 28 27 26 49 49 H 1.09005 * 113.61302 * 334.47929 * 29 26 3 50 50 H 1.08993 * 113.62030 * 105.38774 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6589 3.0125 -1.6686 8 6 2.8579 3.4584 -3.0498 9 1 2.1258 2.9897 -3.7073 10 6 4.2933 3.1270 -3.5190 11 6 4.6814 4.3734 -4.3536 12 7 4.0627 5.4935 -3.5994 13 6 3.9026 6.6781 -4.4532 14 6 5.2508 7.3035 -4.7026 15 8 6.2470 6.8111 -4.2164 16 7 5.3495 8.4105 -5.4649 17 6 6.5761 8.9792 -5.6922 18 1 7.4633 8.5403 -5.2600 19 6 6.6779 10.1202 -6.4786 20 7 5.5986 10.6540 -7.0049 21 14 8.3493 10.8946 -6.7888 22 1 9.3969 10.1078 -6.0899 23 1 8.6274 10.9041 -8.2476 24 1 8.3522 12.2880 -6.2753 25 6 2.7503 4.9920 -3.1370 26 6 3.3590 1.2633 0.7212 27 6 3.8313 2.6358 1.2291 28 6 4.3176 1.9121 2.4957 29 6 3.2558 0.8407 2.1962 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.8469 3.6154 -0.9324 34 1 4.9611 3.0112 -2.6653 35 1 4.2991 2.2306 -4.1391 36 1 4.2636 4.3090 -5.3583 37 1 5.7646 4.4880 -4.3928 38 1 3.4573 6.3836 -5.4035 39 1 3.2539 7.3993 -3.9560 40 1 4.5528 8.8046 -5.8534 41 1 5.6697 11.4503 -7.5542 42 1 1.9745 5.2698 -3.8505 43 1 2.5167 5.4044 -2.1555 44 1 4.1205 0.7184 0.1632 45 1 4.6376 3.0670 0.6357 46 1 3.0174 3.3373 1.4122 47 1 4.1306 2.4673 3.4148 48 1 5.3412 1.5446 2.4228 49 1 2.2845 1.0515 2.6439 50 1 3.5975 -0.1771 2.3838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266333330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -86.787466 kcal Electronic energy + Delta-G solvation = -29897.014644 eV Core-core repulsion = 25732.174566 eV Total energy + Delta-G solvation = -4164.840078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75966 -39.36176 -38.49059 -37.66838 -37.08039 -34.46657 -33.80072 -31.50277 -31.05527 -29.90786 -28.36909 -26.80212 -26.24987 -25.88660 -24.33333 -23.89200 -21.35033 -21.01622 -20.56102 -19.87688 -19.21589 -17.97280 -17.79863 -17.15878 -16.41520 -16.30254 -15.90152 -15.53651 -15.43776 -14.92806 -14.66067 -14.53718 -14.37035 -14.12286 -13.86198 -13.76913 -13.45408 -13.09015 -12.84078 -12.58678 -12.56248 -12.35588 -12.24795 -12.00539 -11.72638 -11.58953 -11.52271 -11.47049 -11.14334 -11.06774 -10.91926 -10.90673 -10.79732 -10.73482 -10.62613 -10.34435 -10.22444 -9.50602 -9.42938 -9.20665 -8.49763 -8.02421 -7.94508 -6.41666 -3.82311 2.38728 2.82644 3.16165 3.26708 3.33579 3.34197 3.90684 4.00227 4.13337 4.23882 4.25347 4.39616 4.48622 4.53811 4.56781 4.71837 4.79276 4.86227 5.00267 5.00956 5.14858 5.18519 5.26300 5.29793 5.35083 5.37552 5.38028 5.40827 5.46139 5.58991 5.64057 5.66308 5.69575 5.77946 5.79095 5.82785 5.96827 6.07362 6.14187 6.27277 6.37023 6.41834 6.65843 7.09015 7.15719 7.33638 7.55477 8.04086 8.06650 8.62137 9.18649 9.54926 10.06844 10.76253 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.002021 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.466859 B =13849.842770 C =14600.446059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.085 3.915 4 H 0.085 0.915 5 C 0.490 3.510 6 O -0.528 6.528 7 N -0.716 5.716 8 C 0.135 3.865 9 H 0.094 0.906 10 C -0.131 4.131 11 C 0.041 3.959 12 N -0.489 5.489 13 C 0.036 3.964 14 C 0.446 3.554 15 O -0.576 6.576 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.028 3.972 26 C -0.105 4.105 27 C -0.140 4.140 28 C -0.140 4.140 29 C -0.124 4.124 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.101 0.899 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 -16.549 16.226 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.023 3.977 4 H 0.102 0.898 5 C 0.276 3.724 6 O -0.403 6.403 7 N -0.370 5.370 8 C 0.030 3.970 9 H 0.112 0.888 10 C -0.170 4.170 11 C -0.087 4.087 12 N -0.213 5.213 13 C -0.096 4.096 14 C 0.231 3.769 15 O -0.460 6.460 16 N -0.203 5.203 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.101 4.101 26 C -0.124 4.124 27 C -0.178 4.178 28 C -0.178 4.178 29 C -0.162 4.162 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.237 0.763 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.821 -17.279 16.202 26.042 hybrid contribution -0.472 1.148 -0.986 1.585 sum -11.294 -16.131 15.216 24.886 Atomic orbital electron populations 1.22869 0.80706 1.03245 0.99926 1.87995 1.19909 1.24861 1.94352 1.22112 0.96606 0.86805 0.92154 0.89768 1.21405 0.77013 0.81848 0.92177 1.90710 1.50095 1.53453 1.46043 1.46207 1.67570 1.14457 1.08749 1.21852 0.98102 0.94055 0.83012 0.88820 1.22923 0.95446 0.98028 1.00622 1.23283 1.02474 0.88512 0.94391 1.64488 1.16699 1.03943 1.36183 1.22081 0.97885 0.93660 0.95987 1.19677 0.89784 0.83544 0.83892 1.90510 1.37915 1.64037 1.53536 1.41868 1.09994 1.23999 1.44475 1.19739 0.86518 1.07832 1.28539 0.87879 1.25260 0.99008 0.96987 0.96803 1.69616 1.28184 1.22496 1.34121 0.85806 0.81766 0.78788 0.78022 1.19226 1.20797 1.20776 1.23145 0.92325 0.92935 1.01698 1.22638 0.94699 0.99044 0.96035 1.23052 1.01597 0.95286 0.97841 1.22796 0.99311 0.97782 0.97869 1.22811 0.99485 0.99556 0.94339 0.89200 0.94011 0.93718 0.76273 0.90261 0.90790 0.94051 0.88083 0.93075 0.89347 0.77541 0.91960 0.92812 0.89924 0.88020 0.90159 0.89693 0.91048 0.89834 0.90082 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.35 -3.75 9.71 -55.09 -0.53 -4.29 16 3 C 0.08 0.75 2.29 -27.89 -0.06 0.69 16 4 H 0.08 0.55 7.63 -51.93 -0.40 0.16 16 5 C 0.49 5.65 7.13 -10.98 -0.08 5.58 16 6 O -0.53 -8.28 16.16 -14.30 -0.23 -8.51 16 7 N -0.72 -7.14 4.95 -52.49 -0.26 -7.40 16 8 C 0.13 1.58 3.34 -66.57 -0.22 1.36 16 9 H 0.09 1.17 7.56 -51.93 -0.39 0.78 16 10 C -0.13 -1.71 6.78 -24.87 -0.17 -1.88 16 11 C 0.04 0.64 5.93 -1.90 -0.01 0.63 16 12 N -0.49 -7.77 4.90 -231.90 -1.14 -8.91 16 13 C 0.04 0.62 5.19 -4.98 -0.03 0.59 16 14 C 0.45 10.38 7.61 -10.99 -0.08 10.29 16 15 O -0.58 -15.36 14.64 5.54 0.08 -15.28 16 16 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 17 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 20 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 21 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.03 0.33 6.43 -2.76 -0.02 0.31 16 26 C -0.11 -0.82 3.32 -89.81 -0.30 -1.11 16 27 C -0.14 -0.88 6.19 -25.92 -0.16 -1.04 16 28 C -0.14 -0.84 8.08 -25.92 -0.21 -1.05 16 29 C -0.12 -0.80 7.47 -25.92 -0.19 -1.00 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 3.20 6.94 -40.82 -0.28 2.92 16 34 H 0.08 1.05 8.06 -51.93 -0.42 0.64 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.62 7.81 -51.93 -0.41 0.22 16 37 H 0.10 1.87 7.10 -51.93 -0.37 1.50 16 38 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16 39 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 40 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.05 0.59 7.77 -51.93 -0.40 0.19 16 43 H 0.08 0.87 7.65 -51.93 -0.40 0.47 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.42 7.98 -51.93 -0.41 0.01 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 404.45 15.07 6.09 6.09 Total: -1.00 -33.79 404.45 -9.39 -43.18 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -8.36 Total: 10.40 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.68 Total: 6.78 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.73 Total: -54.35 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.68 Total: -28.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.79 -9.39 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266333330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.608 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds