Wall clock time and date at job start Sat Apr 11 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 114.00101 * 2 1 4 4 H 1.09005 * 109.46910 * 29.99619 * 3 2 1 5 5 C 1.50700 * 109.46951 * 270.00494 * 3 2 1 6 6 O 1.21279 * 120.00137 * 354.99252 * 5 3 2 7 7 N 1.34782 * 119.99880 * 175.00137 * 5 3 2 8 8 C 1.46501 * 119.99857 * 179.97438 * 7 5 3 9 9 H 1.08997 * 110.27688 * 32.90418 * 8 7 5 10 10 C 1.54604 * 110.30632 * 270.71305 * 8 7 5 11 11 C 1.54936 * 102.92029 * 219.12682 * 10 8 7 12 12 N 1.48534 * 103.22679 * 37.41360 * 11 10 8 13 13 C 1.46896 * 110.99954 * 200.27540 * 12 11 10 14 14 C 1.50693 * 109.47648 * 287.39910 * 13 12 11 15 15 O 1.21297 * 119.99539 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00240 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99904 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00536 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99924 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00173 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99907 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47385 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99846 * 21 19 17 24 24 H 1.48501 * 109.46906 * 239.99855 * 21 19 17 25 25 C 1.47903 * 105.82292 * 320.79564 * 12 11 10 26 26 C 1.52995 * 109.47309 * 150.00059 * 3 2 1 27 27 C 1.53785 * 113.69093 * 200.93734 * 26 3 2 28 28 C 1.53779 * 87.08093 * 139.99088 * 27 26 3 29 29 C 1.53781 * 113.61293 * 298.47359 * 26 3 2 30 30 H 1.09002 * 109.46746 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46727 * 299.99897 * 1 2 3 32 32 H 1.09003 * 109.46880 * 60.00046 * 1 2 3 33 33 H 0.96995 * 120.00066 * 359.97438 * 7 5 3 34 34 H 1.09004 * 110.72183 * 337.48527 * 10 8 7 35 35 H 1.08999 * 110.72271 * 100.76925 * 10 8 7 36 36 H 1.09000 * 110.66519 * 278.98009 * 11 10 8 37 37 H 1.09000 * 110.66534 * 155.85046 * 11 10 8 38 38 H 1.09000 * 109.47290 * 47.40340 * 13 12 11 39 39 H 1.09000 * 109.46912 * 167.39902 * 13 12 11 40 40 H 0.97000 * 120.00616 * 359.97438 * 16 14 13 41 41 H 0.97001 * 120.00519 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.91199 * 265.97780 * 25 12 11 43 43 H 1.08992 * 110.08337 * 144.77665 * 25 12 11 44 44 H 1.09002 * 112.85043 * 69.66617 * 26 3 2 45 45 H 1.09003 * 113.60734 * 254.54208 * 27 26 3 46 46 H 1.08996 * 113.61146 * 25.43706 * 27 26 3 47 47 H 1.08994 * 113.61314 * 220.01752 * 28 27 26 48 48 H 1.09003 * 113.61186 * 89.11185 * 28 27 26 49 49 H 1.09005 * 113.61302 * 334.47929 * 29 26 3 50 50 H 1.08993 * 113.62030 * 105.38774 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6589 3.0125 -1.6686 8 6 2.8579 3.4584 -3.0498 9 1 2.1258 2.9897 -3.7073 10 6 4.2933 3.1270 -3.5190 11 6 4.6814 4.3734 -4.3536 12 7 4.0627 5.4935 -3.5994 13 6 3.9026 6.6781 -4.4532 14 6 5.2508 7.3035 -4.7026 15 8 6.2470 6.8111 -4.2164 16 7 5.3495 8.4105 -5.4649 17 6 6.5761 8.9792 -5.6922 18 1 7.4633 8.5403 -5.2600 19 6 6.6779 10.1202 -6.4786 20 7 5.5986 10.6540 -7.0049 21 14 8.3493 10.8946 -6.7888 22 1 9.3969 10.1078 -6.0899 23 1 8.6274 10.9041 -8.2476 24 1 8.3522 12.2880 -6.2753 25 6 2.7503 4.9920 -3.1370 26 6 3.3590 1.2633 0.7212 27 6 3.8313 2.6358 1.2291 28 6 4.3176 1.9121 2.4957 29 6 3.2558 0.8407 2.1962 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.8469 3.6154 -0.9324 34 1 4.9611 3.0112 -2.6653 35 1 4.2991 2.2306 -4.1391 36 1 4.2636 4.3090 -5.3583 37 1 5.7646 4.4880 -4.3928 38 1 3.4573 6.3836 -5.4035 39 1 3.2539 7.3993 -3.9560 40 1 4.5528 8.8046 -5.8534 41 1 5.6697 11.4503 -7.5542 42 1 1.9745 5.2698 -3.8505 43 1 2.5167 5.4044 -2.1555 44 1 4.1205 0.7184 0.1632 45 1 4.6376 3.0670 0.6357 46 1 3.0174 3.3373 1.4122 47 1 4.1306 2.4673 3.4148 48 1 5.3412 1.5446 2.4228 49 1 2.2845 1.0515 2.6439 50 1 3.5975 -0.1771 2.3838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266333330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:41 Heat of formation + Delta-G solvation = -111.551934 kcal Electronic energy + Delta-G solvation = -29898.088512 eV Core-core repulsion = 25732.174566 eV Total energy + Delta-G solvation = -4165.913946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59529 -40.56813 -39.61029 -38.88849 -37.93075 -35.99255 -35.34649 -33.29600 -32.41024 -30.73983 -29.41580 -28.08600 -27.11226 -26.39499 -25.97408 -24.67579 -22.56985 -21.98776 -21.48289 -20.99247 -20.40989 -19.87515 -18.73494 -17.96715 -17.77821 -17.10203 -17.00321 -16.76500 -16.45902 -16.08922 -16.04314 -15.75888 -15.54045 -15.45290 -15.09038 -14.72558 -14.54297 -14.21581 -14.03780 -13.65557 -13.38726 -13.32841 -13.29495 -13.08626 -12.99531 -12.86844 -12.78076 -12.65820 -12.39040 -12.22549 -12.16800 -12.11175 -11.90122 -11.65803 -11.60862 -11.47670 -11.31877 -11.17719 -10.36088 -10.24738 -10.09638 -9.98731 -9.33949 -8.45512 -5.93614 1.36854 1.42030 1.50419 1.55963 2.00330 2.08115 2.29350 2.69542 2.80542 3.21354 3.35388 3.46631 3.59935 3.67092 3.74168 3.84637 3.93494 4.00851 4.08374 4.12067 4.25506 4.27443 4.29454 4.38647 4.44105 4.49737 4.54065 4.55553 4.67887 4.75475 4.83330 4.85133 4.86259 4.86992 4.93309 5.02295 5.09507 5.13985 5.17511 5.28172 5.42442 5.46091 5.58071 5.82683 5.90662 6.00910 6.08710 6.52290 6.62622 7.15131 7.18686 7.59008 8.15182 8.72176 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.002021 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.466859 B =13849.842770 C =14600.446059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.380 6.380 3 C 0.089 3.911 4 H 0.116 0.884 5 C 0.489 3.511 6 O -0.574 6.574 7 N -0.702 5.702 8 C 0.143 3.857 9 H 0.089 0.911 10 C -0.122 4.122 11 C 0.043 3.957 12 N -0.507 5.507 13 C 0.048 3.952 14 C 0.443 3.557 15 O -0.615 6.615 16 N -0.577 5.577 17 C -0.329 4.329 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.991 3.009 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.271 1.271 25 C 0.034 3.966 26 C -0.110 4.110 27 C -0.136 4.136 28 C -0.138 4.138 29 C -0.119 4.119 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 -15.857 17.651 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.297 6.297 3 C 0.028 3.972 4 H 0.134 0.866 5 C 0.276 3.724 6 O -0.453 6.453 7 N -0.357 5.357 8 C 0.037 3.963 9 H 0.107 0.893 10 C -0.162 4.162 11 C -0.085 4.085 12 N -0.232 5.232 13 C -0.084 4.084 14 C 0.230 3.770 15 O -0.501 6.501 16 N -0.214 5.214 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.094 4.094 26 C -0.129 4.129 27 C -0.173 4.173 28 C -0.176 4.176 29 C -0.156 4.156 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.113 0.887 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.443 -16.567 17.651 27.218 hybrid contribution 0.018 0.866 -1.409 1.654 sum -12.425 -15.701 16.242 25.781 Atomic orbital electron populations 1.23023 0.79469 1.04120 1.00569 1.87969 1.21443 1.25970 1.94304 1.22249 0.97651 0.86897 0.90434 0.86649 1.21995 0.75905 0.81535 0.92970 1.90689 1.52252 1.54713 1.47651 1.46085 1.66735 1.14357 1.08499 1.21671 0.96688 0.94119 0.83846 0.89255 1.22812 0.96473 0.96817 1.00050 1.23141 1.00338 0.89810 0.95255 1.64415 1.19325 1.03612 1.35813 1.21956 0.94136 0.94556 0.97731 1.20762 0.91773 0.82448 0.82001 1.90488 1.40175 1.64826 1.54598 1.41938 1.09369 1.24815 1.45316 1.19664 0.86973 1.09124 1.30094 0.90423 1.26015 1.02531 0.96851 0.96021 1.69672 1.29635 1.22804 1.34131 0.84891 0.77408 0.78012 0.78154 1.19866 1.19744 1.19586 1.23196 0.90558 0.92563 1.03100 1.22635 0.93650 1.00145 0.96510 1.23095 1.01916 0.94782 0.97540 1.22786 0.98911 0.97616 0.98261 1.22814 1.00324 0.99390 0.93102 0.88432 0.91329 0.94946 0.74785 0.90743 0.90866 0.93632 0.91811 0.91117 0.86680 0.77034 0.91379 0.90992 0.87763 0.90297 0.91165 0.87533 0.89789 0.90434 0.88663 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.81 113.37 1.23 1.56 16 2 O -0.38 -7.61 9.71 -129.99 -1.26 -8.87 16 3 C 0.09 1.43 2.29 29.85 0.07 1.49 16 4 H 0.12 1.11 7.63 -2.38 -0.02 1.09 16 5 C 0.49 10.75 7.13 87.66 0.63 11.38 16 6 O -0.57 -17.99 16.16 15.96 0.26 -17.73 16 7 N -0.70 -12.75 4.95 -438.36 -2.17 -14.92 16 8 C 0.14 3.11 3.34 45.87 0.15 3.26 16 9 H 0.09 2.11 7.56 -2.39 -0.02 2.09 16 10 C -0.12 -3.18 6.78 31.80 0.22 -2.96 16 11 C 0.04 1.34 5.93 86.65 0.51 1.85 16 12 N -0.51 -15.43 4.90 -887.61 -4.35 -19.78 16 13 C 0.05 1.58 5.19 85.56 0.44 2.02 16 14 C 0.44 20.78 7.61 87.66 0.67 21.45 16 15 O -0.62 -33.74 14.64 -3.08 -0.05 -33.79 16 16 N -0.58 -29.32 5.29 -306.99 -1.62 -30.95 16 17 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 18 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 19 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 20 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 21 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C 0.03 0.71 6.43 86.44 0.56 1.26 16 26 C -0.11 -1.58 3.32 -10.27 -0.03 -1.61 16 27 C -0.14 -1.43 6.19 31.12 0.19 -1.24 16 28 C -0.14 -1.39 8.08 31.12 0.25 -1.14 16 29 C -0.12 -1.31 7.47 31.12 0.23 -1.08 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.41 5.49 6.94 -92.71 -0.64 4.84 16 34 H 0.07 1.99 8.06 -2.38 -0.02 1.97 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.37 7.81 -2.39 -0.02 1.35 16 37 H 0.06 2.48 7.10 -2.39 -0.02 2.46 16 38 H 0.07 2.10 7.83 -2.39 -0.02 2.08 16 39 H 0.12 3.23 8.08 -2.39 -0.02 3.21 16 40 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 41 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.07 1.32 7.77 -2.39 -0.02 1.30 16 43 H 0.10 1.78 7.65 -2.39 -0.02 1.76 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.11 0.67 7.98 -2.39 -0.02 0.65 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.09 0.80 8.10 -2.38 -0.02 0.78 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -75.25 404.45 -0.92 -76.16 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -0.43 Total: 36.00 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 6.39 Total: 18.12 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -7.86 Total: -114.90 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -1.05 Total: -60.39 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.25 -0.92 -76.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266333330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.388 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds