Wall clock time and date at job start Sat Apr 11 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42900 * 114.00333 * 2 1 4 4 H 1.09001 * 109.47178 * 29.99512 * 3 2 1 5 5 C 1.50698 * 109.47742 * 149.99897 * 3 2 1 6 6 O 1.21281 * 119.99683 * 5.00077 * 5 3 2 7 7 N 1.34771 * 120.00196 * 184.99919 * 5 3 2 8 8 C 1.46503 * 120.00010 * 179.97438 * 7 5 3 9 9 H 1.09008 * 110.76355 * 31.80219 * 8 7 5 10 10 C 1.55139 * 110.70811 * 268.60375 * 8 7 5 11 11 C 1.54908 * 101.65097 * 205.96406 * 10 8 7 12 12 N 1.47839 * 104.79608 * 37.06740 * 11 10 8 13 13 C 1.46902 * 110.99738 * 213.63728 * 12 11 10 14 14 C 1.50702 * 109.47027 * 290.84191 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31414 * 120.00152 * 0.27554 * 19 17 16 21 21 Si 1.86803 * 119.99914 * 180.27723 * 19 17 16 22 22 H 1.48496 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99961 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00007 * 21 19 17 25 25 C 1.47437 * 108.57063 * 335.90335 * 12 11 10 26 26 C 1.53002 * 109.46934 * 270.00109 * 3 2 1 27 27 C 1.53781 * 113.61575 * 157.49610 * 26 3 2 28 28 C 1.53785 * 87.07911 * 220.01892 * 27 26 3 29 29 C 1.53779 * 87.08246 * 25.42988 * 28 27 26 30 30 H 1.09006 * 109.47300 * 300.00235 * 1 2 3 31 31 H 1.09007 * 109.47410 * 60.00115 * 1 2 3 32 32 H 1.09003 * 109.47531 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99854 * 0.02562 * 7 5 3 34 34 H 1.09004 * 110.98671 * 324.05336 * 10 8 7 35 35 H 1.09001 * 110.98895 * 87.83331 * 10 8 7 36 36 H 1.09004 * 110.36924 * 278.23644 * 11 10 8 37 37 H 1.08996 * 110.37376 * 155.90235 * 11 10 8 38 38 H 1.09004 * 109.47131 * 170.84435 * 13 12 11 39 39 H 1.08994 * 109.47471 * 50.84184 * 13 12 11 40 40 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 41 41 H 0.96991 * 119.99827 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.89060 * 120.39340 * 25 12 11 43 43 H 1.09001 * 109.89404 * 241.58655 * 25 12 11 44 44 H 1.08996 * 112.84800 * 288.80061 * 26 3 2 45 45 H 1.09009 * 113.61109 * 334.56496 * 27 26 3 46 46 H 1.08993 * 113.61815 * 105.46978 * 27 26 3 47 47 H 1.08993 * 113.61286 * 270.87878 * 28 27 26 48 48 H 1.09007 * 113.68812 * 139.99216 * 28 27 26 49 49 H 1.08990 * 113.61249 * 220.01576 * 29 28 27 50 50 H 1.09004 * 113.61024 * 89.11699 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2639 0.7104 6 8 3.7896 0.2045 1.0914 7 7 4.0254 2.4040 0.9223 8 6 5.3165 2.3637 1.6134 9 1 5.8383 1.4300 1.4033 10 6 5.1271 2.5543 3.1414 11 6 6.4974 3.1465 3.5550 12 7 6.8792 4.0328 2.4351 13 6 8.3354 4.0383 2.2411 14 6 8.9943 4.7358 3.4031 15 8 8.3176 5.1838 4.3045 16 7 10.3357 4.8618 3.4408 17 6 10.9352 5.4959 4.4982 18 1 10.3326 5.8941 5.3012 19 6 12.3185 5.6207 4.5399 20 7 13.0517 5.1357 3.5631 21 14 13.1358 6.4778 5.9844 22 1 12.0967 6.9312 6.9435 23 1 14.0582 5.5327 6.6634 24 1 13.9023 7.6515 5.4944 25 6 6.1857 3.5756 1.2170 26 6 2.2176 1.7713 -1.4425 27 6 2.3078 3.2994 -1.5895 28 6 1.4686 3.1470 -2.8691 29 6 0.9163 1.8484 -2.2582 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.6644 3.2513 0.6179 34 1 4.3194 3.2559 3.3501 35 1 4.9489 1.5989 3.6349 36 1 7.2329 2.3514 3.6776 37 1 6.4002 3.7201 4.4768 38 1 8.5769 4.5642 1.3173 39 1 8.6978 3.0122 2.1804 40 1 10.8770 4.5032 2.7201 41 1 14.0172 5.2232 3.5920 42 1 5.5534 4.3741 0.8284 43 1 6.9156 3.2780 0.4641 44 1 3.0195 1.2346 -1.9495 45 1 1.7980 3.8452 -0.7954 46 1 3.3195 3.6617 -1.7714 47 1 2.0661 2.9877 -3.7667 48 1 0.7157 3.9253 -2.9945 49 1 0.8047 1.0393 -2.9799 50 1 0.0261 1.9975 -1.6470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266333331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:46 Heat of formation + Delta-G solvation = -82.502586 kcal Electronic energy + Delta-G solvation = -29731.290175 eV Core-core repulsion = 25566.635903 eV Total energy + Delta-G solvation = -4164.654272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84075 -39.50442 -38.56470 -37.56873 -37.13046 -34.50231 -33.79225 -31.48824 -31.05375 -29.95016 -28.36421 -26.91025 -26.48112 -25.99732 -24.31659 -23.87639 -21.34580 -21.00896 -20.66627 -20.00700 -19.19596 -17.93110 -17.80805 -17.20510 -16.65551 -16.39966 -15.85313 -15.56449 -15.51025 -14.97157 -14.67495 -14.46725 -14.41445 -14.12727 -13.79881 -13.67607 -13.51070 -13.03465 -12.98854 -12.89792 -12.56970 -12.44839 -12.30697 -11.98262 -11.91749 -11.67479 -11.52426 -11.46826 -11.38979 -11.12662 -10.99127 -10.96629 -10.82516 -10.72140 -10.33059 -10.22337 -10.20634 -9.57620 -9.49137 -9.21472 -8.45388 -7.96425 -7.89420 -6.39922 -3.80507 2.37610 2.56771 3.17541 3.27947 3.35148 3.51175 3.92550 3.96109 4.05414 4.14005 4.19850 4.26459 4.37334 4.45371 4.51569 4.64404 4.79314 4.81984 4.92707 4.96304 4.98300 5.14977 5.17846 5.21693 5.27070 5.32381 5.34826 5.37516 5.40117 5.43607 5.48135 5.60821 5.65544 5.74071 5.81235 5.88264 5.92602 5.97653 6.11392 6.29676 6.32661 6.47140 6.64198 7.19339 7.19905 7.29314 7.57180 8.01488 8.08391 8.63995 9.20350 9.56737 10.08661 10.78020 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.001869 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.387761 B =14973.877980 C =15464.181887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.355 6.355 3 C 0.083 3.917 4 H 0.086 0.914 5 C 0.515 3.485 6 O -0.519 6.519 7 N -0.715 5.715 8 C 0.123 3.877 9 H 0.098 0.902 10 C -0.140 4.140 11 C 0.054 3.946 12 N -0.501 5.501 13 C 0.039 3.961 14 C 0.445 3.555 15 O -0.577 6.577 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.038 3.962 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.138 4.138 29 C -0.136 4.136 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.392 0.608 41 H 0.270 0.730 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.695 -6.338 -14.024 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.272 6.272 3 C 0.022 3.978 4 H 0.103 0.897 5 C 0.300 3.700 6 O -0.393 6.393 7 N -0.369 5.369 8 C 0.017 3.983 9 H 0.116 0.884 10 C -0.179 4.179 11 C -0.074 4.074 12 N -0.225 5.225 13 C -0.093 4.093 14 C 0.230 3.770 15 O -0.461 6.461 16 N -0.203 5.203 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.091 4.091 26 C -0.148 4.148 27 C -0.180 4.180 28 C -0.176 4.176 29 C -0.173 4.173 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.120 0.880 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.640 -6.479 -13.039 28.620 hybrid contribution 0.819 -0.022 -0.160 0.835 sum -23.821 -6.501 -13.198 27.998 Atomic orbital electron populations 1.23091 0.80756 1.03401 1.00396 1.88039 1.19581 1.24798 1.94830 1.21972 0.93458 0.86960 0.95433 0.89660 1.20367 0.86179 0.84155 0.79300 1.90736 1.68922 1.29779 1.49845 1.45911 1.21582 1.09365 1.60012 1.22294 0.83639 1.00061 0.92260 0.88445 1.23157 0.98740 1.01436 0.94602 1.23012 0.93987 0.94279 0.96105 1.63291 1.06102 1.50282 1.02849 1.22150 0.87996 0.99710 0.99427 1.19710 0.82951 0.85721 0.88596 1.90508 1.63151 1.52812 1.39597 1.41867 1.04748 1.51316 1.22392 1.19742 0.90013 1.32277 1.00603 0.87877 1.25263 0.96347 0.97965 0.98494 1.69619 1.06373 1.46213 1.32201 0.85804 0.79070 0.78712 0.80779 1.19236 1.20808 1.20785 1.23080 0.97251 0.95211 0.93580 1.23063 1.00224 0.97050 0.94465 1.23042 1.01493 0.94623 0.98793 1.22780 0.99601 0.97793 0.97408 1.23003 0.96587 0.98479 0.99225 0.93942 0.92985 0.89206 0.76430 0.90419 0.90561 0.93641 0.88427 0.89306 0.93148 0.77528 0.91966 0.90166 0.91932 0.87990 0.89622 0.90458 0.89875 0.91059 0.90909 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.57 101.05 1.07 1.20 16 2 O -0.36 -3.74 9.83 -55.09 -0.54 -4.28 16 3 C 0.08 0.71 2.46 -27.88 -0.07 0.64 16 4 H 0.09 0.54 7.59 -51.93 -0.39 0.14 16 5 C 0.52 5.97 7.18 -10.99 -0.08 5.89 16 6 O -0.52 -8.48 16.15 -14.30 -0.23 -8.71 16 7 N -0.71 -6.82 5.09 -52.04 -0.26 -7.08 16 8 C 0.12 1.44 3.31 -66.11 -0.22 1.22 16 9 H 0.10 1.30 7.55 -51.92 -0.39 0.91 16 10 C -0.14 -1.80 6.76 -24.59 -0.17 -1.97 16 11 C 0.05 0.86 5.74 -2.30 -0.01 0.85 16 12 N -0.50 -8.11 4.86 -232.70 -1.13 -9.24 16 13 C 0.04 0.69 5.05 -4.97 -0.03 0.66 16 14 C 0.45 10.48 7.58 -10.98 -0.08 10.40 16 15 O -0.58 -15.52 14.61 5.55 0.08 -15.44 16 16 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 20 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 21 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.04 0.45 6.61 -2.84 -0.02 0.43 16 26 C -0.13 -0.85 3.33 -89.81 -0.30 -1.15 16 27 C -0.14 -0.68 6.28 -25.92 -0.16 -0.84 16 28 C -0.14 -0.63 8.08 -25.92 -0.21 -0.84 16 29 C -0.14 -0.69 6.18 -25.92 -0.16 -0.85 16 30 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 31 H 0.05 0.24 4.95 -51.93 -0.26 -0.02 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.40 2.76 7.04 -40.82 -0.29 2.47 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.75 7.62 -51.93 -0.40 0.35 16 37 H 0.10 1.80 7.37 -51.93 -0.38 1.42 16 38 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 39 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 40 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.08 0.83 7.72 -51.93 -0.40 0.43 16 43 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.32 7.96 -51.92 -0.41 -0.10 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 0.35 6.33 -51.93 -0.33 0.02 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -34.71 398.23 -9.22 -43.94 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.10 Total: 9.37 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.68 Total: 7.68 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.73 Total: -54.68 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.69 Total: -28.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.71 -9.22 -43.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266333331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.564 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds