Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00128 * 2 1 4 4 H 1.09002 * 109.47021 * 30.00502 * 3 2 1 5 5 C 1.50699 * 109.47380 * 270.00092 * 3 2 1 6 6 O 1.21280 * 119.99966 * 355.00454 * 5 3 2 7 7 N 1.34775 * 119.99968 * 174.99706 * 5 3 2 8 8 C 1.46494 * 120.00226 * 180.02562 * 7 5 3 9 9 H 1.09003 * 109.53217 * 35.10257 * 8 7 5 10 10 C 1.53122 * 109.50368 * 275.00570 * 8 7 5 11 11 C 1.53119 * 109.15843 * 182.40107 * 10 8 7 12 12 C 1.53045 * 109.27942 * 57.65498 * 11 10 8 13 13 N 1.46843 * 109.51801 * 300.81823 * 12 11 10 14 14 C 1.46902 * 110.99758 * 185.83903 * 13 12 11 15 15 C 1.50702 * 109.47027 * 66.04468 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99593 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48498 * 109.47011 * 329.99735 * 22 20 18 26 26 C 1.46845 * 111.20143 * 61.74309 * 13 12 11 27 27 C 1.53005 * 109.47003 * 150.00125 * 3 2 1 28 28 C 1.53004 * 117.49890 * 8.74900 * 27 3 2 29 29 C 1.52998 * 117.49919 * 300.08953 * 27 3 2 30 30 H 1.08996 * 109.47517 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46953 * 299.99485 * 1 2 3 32 32 H 1.09002 * 109.47202 * 59.99286 * 1 2 3 33 33 H 0.96998 * 119.99864 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.52375 * 62.50170 * 10 8 7 35 35 H 1.08998 * 109.57623 * 302.33714 * 10 8 7 36 36 H 1.08996 * 109.50539 * 297.71239 * 11 10 8 37 37 H 1.09000 * 109.50615 * 177.59509 * 11 10 8 38 38 H 1.08998 * 109.46085 * 180.80300 * 12 11 10 39 39 H 1.08994 * 109.45072 * 60.82559 * 12 11 10 40 40 H 1.09004 * 109.47131 * 306.04712 * 14 13 12 41 41 H 1.09000 * 109.47732 * 186.04822 * 14 13 12 42 42 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 43 43 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 44 44 H 1.09009 * 109.46022 * 58.27123 * 26 13 12 45 45 H 1.09002 * 109.46467 * 178.23340 * 26 13 12 46 46 H 1.08999 * 115.54720 * 154.42100 * 27 3 2 47 47 H 1.09003 * 117.49647 * 0.02562 * 28 27 3 48 48 H 1.08998 * 117.49936 * 145.01765 * 28 27 3 49 49 H 1.08999 * 117.50153 * 214.97958 * 29 27 3 50 50 H 1.09003 * 117.50113 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.8570 3.4589 -3.0496 9 1 2.0946 3.0141 -3.6893 10 6 4.2446 3.0274 -3.5323 11 6 4.4667 3.5494 -4.9545 12 6 4.3145 5.0722 -4.9634 13 7 2.9708 5.4337 -4.4944 14 6 2.7404 6.8791 -4.6203 15 6 2.7260 7.2603 -6.0782 16 8 2.8909 6.4114 -6.9288 17 7 2.5238 8.5435 -6.4373 18 6 2.5050 8.8895 -7.7638 19 1 2.6518 8.1336 -8.5210 20 6 2.2971 10.2125 -8.1339 21 7 2.2786 10.5439 -9.4054 22 14 2.0439 11.5200 -6.8241 23 1 3.3576 12.0944 -6.4376 24 1 1.1718 12.5956 -7.3604 25 1 1.4009 10.9094 -5.6329 26 6 2.7514 4.9842 -3.1138 27 6 3.3590 1.2632 0.7213 28 6 3.9153 -0.1112 1.0990 29 6 3.3639 0.8165 2.1846 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.8475 3.6152 -0.9322 34 1 4.3092 1.9393 -3.5294 35 1 5.0061 3.4393 -2.8700 36 1 3.7298 3.1061 -5.6241 37 1 5.4695 3.2820 -5.2879 38 1 4.4580 5.4456 -5.9773 39 1 5.0607 5.5154 -4.3041 40 1 3.5383 7.4199 -4.1112 41 1 1.7822 7.1351 -4.1683 42 1 2.3917 9.2224 -5.7572 43 1 2.1338 11.4677 -9.6638 44 1 3.5050 5.4281 -2.4632 45 1 1.7596 5.2938 -2.7842 46 1 4.0735 2.0320 0.4273 47 1 3.3207 -0.9852 0.8333 48 1 4.9959 -0.2464 1.0539 49 1 4.0819 1.2912 2.8533 50 1 2.4062 0.5532 2.6337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267924291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -77.401296 kcal Electronic energy + Delta-G solvation = -29892.435383 eV Core-core repulsion = 25728.002319 eV Total energy + Delta-G solvation = -4164.433063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.63646 -39.38393 -38.33560 -37.48201 -36.51092 -34.83085 -33.89771 -32.74459 -31.65071 -30.43077 -28.61970 -27.60958 -26.45056 -24.62801 -23.03236 -22.83425 -22.72043 -21.68085 -20.43845 -19.95225 -19.36800 -18.33269 -17.91428 -17.16312 -16.57992 -16.14149 -15.84255 -15.51206 -15.23431 -14.99891 -14.92539 -14.69391 -14.58195 -14.03012 -13.90198 -13.65943 -13.53096 -13.38955 -13.17102 -13.07637 -12.59896 -12.33180 -12.02008 -11.97249 -11.93866 -11.75119 -11.60956 -11.38090 -11.19086 -11.04766 -10.86240 -10.80715 -10.65616 -10.60278 -10.59491 -10.46507 -9.98298 -9.54879 -9.47183 -9.23098 -8.58186 -8.19128 -7.99454 -6.31595 -3.83017 2.32734 2.67765 3.01088 3.05078 3.13805 3.27371 3.45372 3.72243 3.94286 4.09263 4.16390 4.36491 4.43873 4.62722 4.65479 4.74144 4.76840 4.86000 4.88702 5.00895 5.08824 5.11213 5.19507 5.24982 5.26874 5.28434 5.36423 5.46543 5.49322 5.53067 5.62804 5.67463 5.68791 5.78293 5.87487 5.90900 5.93270 6.04669 6.07157 6.25035 6.42360 6.51308 6.58930 7.12537 7.26462 7.28682 7.57771 8.00433 8.14063 8.59509 8.94804 9.41734 9.82575 10.81496 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.002008 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.341711 B =13941.657869 C =14157.126151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.105 3.895 4 H 0.089 0.911 5 C 0.495 3.505 6 O -0.518 6.518 7 N -0.724 5.724 8 C 0.149 3.851 9 H 0.099 0.901 10 C -0.127 4.127 11 C -0.111 4.111 12 C 0.050 3.950 13 N -0.511 5.511 14 C 0.045 3.955 15 C 0.452 3.548 16 O -0.557 6.557 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.051 3.949 27 C -0.163 4.163 28 C -0.158 4.158 29 C -0.169 4.169 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.397 0.603 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.023 0.977 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.034 0.966 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -14.844 26.920 30.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.043 3.957 4 H 0.107 0.893 5 C 0.280 3.720 6 O -0.392 6.392 7 N -0.378 5.378 8 C 0.044 3.956 9 H 0.117 0.883 10 C -0.166 4.166 11 C -0.149 4.149 12 C -0.078 4.078 13 N -0.236 5.236 14 C -0.086 4.086 15 C 0.238 3.762 16 O -0.438 6.438 17 N -0.231 5.231 18 C -0.432 4.432 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.078 4.078 27 C -0.182 4.182 28 C -0.195 4.195 29 C -0.206 4.206 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.231 0.769 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.096 0.904 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.146 -16.243 25.183 29.989 hybrid contribution 0.191 2.323 1.780 2.932 sum 1.338 -13.921 26.963 30.374 Atomic orbital electron populations 1.22888 0.80401 1.03402 1.00150 1.87977 1.20146 1.24715 1.94358 1.21421 0.95346 0.86926 0.92008 0.89316 1.21194 0.77081 0.81819 0.91907 1.90742 1.49297 1.53325 1.45863 1.46068 1.68186 1.14504 1.09027 1.20955 0.98631 0.93951 0.82021 0.88291 1.21966 0.96005 1.01319 0.97334 1.21509 1.02053 0.95397 0.95987 1.22335 0.87043 0.95617 1.02759 1.61368 1.29520 1.13770 1.18917 1.21868 1.01700 0.88122 0.96925 1.19610 0.84085 0.83013 0.89508 1.90540 1.52817 1.48706 1.51747 1.42211 1.65536 1.07226 1.08113 1.19424 1.46584 0.95332 0.81887 0.86241 1.25040 0.97716 0.97212 0.96261 1.69622 1.48754 1.18986 1.14758 0.86671 0.78913 0.82328 0.81462 1.19696 1.20193 1.19515 1.22253 1.01263 0.94004 0.90233 1.22263 0.96535 1.01300 0.98080 1.22905 1.00831 0.94001 1.01718 1.22979 1.03285 1.03854 0.90464 0.89088 0.93936 0.93428 0.76922 0.91470 0.92382 0.90517 0.91323 0.87558 0.95878 0.93297 0.89197 0.79764 0.91627 0.94771 0.90365 0.86310 0.87313 0.88752 0.88446 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.30 16 2 O -0.36 -3.50 8.24 -55.09 -0.45 -3.95 16 3 C 0.10 0.86 2.87 -27.88 -0.08 0.78 16 4 H 0.09 0.52 7.79 -51.93 -0.40 0.12 16 5 C 0.50 5.47 7.09 -10.99 -0.08 5.40 16 6 O -0.52 -8.16 16.17 -14.30 -0.23 -8.39 16 7 N -0.72 -6.53 4.97 -53.73 -0.27 -6.80 16 8 C 0.15 1.74 2.61 -67.85 -0.18 1.56 16 9 H 0.10 1.46 7.58 -51.93 -0.39 1.07 16 10 C -0.13 -1.51 5.58 -26.61 -0.15 -1.65 16 11 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 12 C 0.05 0.77 5.11 -3.83 -0.02 0.75 16 13 N -0.51 -7.94 4.39 -236.11 -1.04 -8.97 16 14 C 0.05 0.73 5.45 -4.97 -0.03 0.71 16 15 C 0.45 10.06 7.46 -10.98 -0.08 9.98 16 16 O -0.56 -14.59 13.92 5.55 0.08 -14.51 16 17 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 18 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 22 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 26 C 0.05 0.59 4.93 -3.84 -0.02 0.57 16 27 C -0.16 -1.10 5.67 -90.62 -0.51 -1.62 16 28 C -0.16 -1.13 9.88 -26.69 -0.26 -1.39 16 29 C -0.17 -0.93 10.19 -26.69 -0.27 -1.21 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.11 2.03 5.80 -51.93 -0.30 1.73 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.09 1.27 7.98 -51.93 -0.41 0.85 16 42 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.03 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 46 H 0.12 0.68 8.03 -51.93 -0.42 0.26 16 47 H 0.11 0.93 7.06 -51.93 -0.37 0.56 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 402.71 15.07 6.07 6.07 Total: -1.00 -35.01 402.71 -9.19 -44.19 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.35 Total: 10.84 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.00 Total: 5.86 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.59 Total: -54.54 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.61 Total: -26.86 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.01 -9.19 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267924291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.209 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds