Wall clock time and date at job start Sat Apr 11 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00128 * 2 1 4 4 H 1.09002 * 109.47021 * 30.00502 * 3 2 1 5 5 C 1.50699 * 109.47380 * 270.00092 * 3 2 1 6 6 O 1.21280 * 119.99966 * 355.00454 * 5 3 2 7 7 N 1.34775 * 119.99968 * 174.99706 * 5 3 2 8 8 C 1.46494 * 120.00226 * 180.02562 * 7 5 3 9 9 H 1.09003 * 109.53217 * 35.10257 * 8 7 5 10 10 C 1.53122 * 109.50368 * 275.00570 * 8 7 5 11 11 C 1.53119 * 109.15843 * 182.40107 * 10 8 7 12 12 C 1.53045 * 109.27942 * 57.65498 * 11 10 8 13 13 N 1.46843 * 109.51801 * 300.81823 * 12 11 10 14 14 C 1.46902 * 110.99758 * 185.83903 * 13 12 11 15 15 C 1.50702 * 109.47027 * 66.04468 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99593 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48498 * 109.47011 * 329.99735 * 22 20 18 26 26 C 1.46845 * 111.20143 * 61.74309 * 13 12 11 27 27 C 1.53005 * 109.47003 * 150.00125 * 3 2 1 28 28 C 1.53004 * 117.49890 * 8.74900 * 27 3 2 29 29 C 1.52998 * 117.49919 * 300.08953 * 27 3 2 30 30 H 1.08996 * 109.47517 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46953 * 299.99485 * 1 2 3 32 32 H 1.09002 * 109.47202 * 59.99286 * 1 2 3 33 33 H 0.96998 * 119.99864 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.52375 * 62.50170 * 10 8 7 35 35 H 1.08998 * 109.57623 * 302.33714 * 10 8 7 36 36 H 1.08996 * 109.50539 * 297.71239 * 11 10 8 37 37 H 1.09000 * 109.50615 * 177.59509 * 11 10 8 38 38 H 1.08998 * 109.46085 * 180.80300 * 12 11 10 39 39 H 1.08994 * 109.45072 * 60.82559 * 12 11 10 40 40 H 1.09004 * 109.47131 * 306.04712 * 14 13 12 41 41 H 1.09000 * 109.47732 * 186.04822 * 14 13 12 42 42 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 43 43 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 44 44 H 1.09009 * 109.46022 * 58.27123 * 26 13 12 45 45 H 1.09002 * 109.46467 * 178.23340 * 26 13 12 46 46 H 1.08999 * 115.54720 * 154.42100 * 27 3 2 47 47 H 1.09003 * 117.49647 * 0.02562 * 28 27 3 48 48 H 1.08998 * 117.49936 * 145.01765 * 28 27 3 49 49 H 1.08999 * 117.50153 * 214.97958 * 29 27 3 50 50 H 1.09003 * 117.50113 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.8570 3.4589 -3.0496 9 1 2.0946 3.0141 -3.6893 10 6 4.2446 3.0274 -3.5323 11 6 4.4667 3.5494 -4.9545 12 6 4.3145 5.0722 -4.9634 13 7 2.9708 5.4337 -4.4944 14 6 2.7404 6.8791 -4.6203 15 6 2.7260 7.2603 -6.0782 16 8 2.8909 6.4114 -6.9288 17 7 2.5238 8.5435 -6.4373 18 6 2.5050 8.8895 -7.7638 19 1 2.6518 8.1336 -8.5210 20 6 2.2971 10.2125 -8.1339 21 7 2.2786 10.5439 -9.4054 22 14 2.0439 11.5200 -6.8241 23 1 3.3576 12.0944 -6.4376 24 1 1.1718 12.5956 -7.3604 25 1 1.4009 10.9094 -5.6329 26 6 2.7514 4.9842 -3.1138 27 6 3.3590 1.2632 0.7213 28 6 3.9153 -0.1112 1.0990 29 6 3.3639 0.8165 2.1846 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 2.8475 3.6152 -0.9322 34 1 4.3092 1.9393 -3.5294 35 1 5.0061 3.4393 -2.8700 36 1 3.7298 3.1061 -5.6241 37 1 5.4695 3.2820 -5.2879 38 1 4.4580 5.4456 -5.9773 39 1 5.0607 5.5154 -4.3041 40 1 3.5383 7.4199 -4.1112 41 1 1.7822 7.1351 -4.1683 42 1 2.3917 9.2224 -5.7572 43 1 2.1338 11.4677 -9.6638 44 1 3.5050 5.4281 -2.4632 45 1 1.7596 5.2938 -2.7842 46 1 4.0735 2.0320 0.4273 47 1 3.3207 -0.9852 0.8333 48 1 4.9959 -0.2464 1.0539 49 1 4.0819 1.2912 2.8533 50 1 2.4062 0.5532 2.6337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267924291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:04 Heat of formation + Delta-G solvation = -104.834537 kcal Electronic energy + Delta-G solvation = -29893.624977 eV Core-core repulsion = 25728.002319 eV Total energy + Delta-G solvation = -4165.622658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.48419 -40.66091 -39.52634 -38.56884 -37.07615 -36.14002 -35.59526 -33.94316 -33.62208 -31.33068 -29.47076 -28.92118 -27.08749 -26.38246 -24.10909 -23.95370 -23.19167 -22.39923 -21.28098 -21.21164 -20.90938 -20.17274 -18.72571 -17.91672 -17.69765 -17.30758 -16.84665 -16.69414 -16.40744 -16.29426 -15.93762 -15.66688 -15.39867 -15.32593 -15.16792 -14.81385 -14.71135 -14.48941 -14.43865 -14.11241 -13.93492 -13.78151 -13.50235 -13.04725 -12.69740 -12.55013 -12.43333 -12.40784 -12.37452 -12.24614 -11.97571 -11.94065 -11.85288 -11.72314 -11.58466 -11.39971 -11.34160 -11.09025 -10.37229 -10.23888 -10.19637 -10.11150 -9.19391 -8.39458 -6.00280 1.31085 1.37032 1.46046 1.51797 1.87424 1.98818 2.24768 2.62124 2.78697 2.95691 3.16848 3.23132 3.55533 3.71423 3.79811 3.87222 3.95131 4.02543 4.09271 4.17623 4.24699 4.28758 4.32298 4.38827 4.40729 4.49137 4.49942 4.53899 4.59999 4.61482 4.70810 4.81764 4.87802 4.88962 4.99427 5.02014 5.04141 5.23885 5.24593 5.33766 5.37306 5.42986 5.55468 5.91339 5.98371 6.04104 6.21191 6.55455 6.62130 6.91073 7.23940 7.42432 8.00799 8.78332 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.002008 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.341711 B =13941.657869 C =14157.126151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.107 3.893 4 H 0.120 0.880 5 C 0.492 3.508 6 O -0.575 6.575 7 N -0.704 5.704 8 C 0.154 3.846 9 H 0.059 0.941 10 C -0.116 4.116 11 C -0.108 4.108 12 C 0.055 3.945 13 N -0.541 5.541 14 C 0.058 3.942 15 C 0.449 3.551 16 O -0.606 6.606 17 N -0.592 5.592 18 C -0.326 4.326 19 H 0.053 0.947 20 C -0.019 4.019 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.228 1.228 26 C 0.058 3.942 27 C -0.166 4.166 28 C -0.179 4.179 29 C -0.147 4.147 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.418 0.582 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.390 0.610 43 H 0.278 0.722 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.134 0.866 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.116 0.884 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -12.815 32.716 35.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.046 3.954 4 H 0.137 0.863 5 C 0.279 3.721 6 O -0.453 6.453 7 N -0.358 5.358 8 C 0.049 3.951 9 H 0.077 0.923 10 C -0.155 4.155 11 C -0.146 4.146 12 C -0.072 4.072 13 N -0.267 5.267 14 C -0.072 4.072 15 C 0.237 3.763 16 O -0.490 6.490 17 N -0.234 5.234 18 C -0.455 4.455 19 H 0.071 0.929 20 C -0.217 4.217 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.203 1.203 25 H -0.152 1.152 26 C -0.070 4.070 27 C -0.184 4.184 28 C -0.216 4.216 29 C -0.184 4.184 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.256 0.744 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.225 0.775 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.152 0.848 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.135 0.865 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.346 -14.210 31.048 34.171 hybrid contribution 0.146 1.520 -0.141 1.533 sum 1.492 -12.690 30.907 33.444 Atomic orbital electron populations 1.23003 0.79541 1.04081 1.00536 1.87965 1.21285 1.25974 1.94270 1.21586 0.96825 0.86892 0.90130 0.86273 1.21869 0.75886 0.81656 0.92708 1.90725 1.51811 1.54982 1.47788 1.45812 1.67162 1.14287 1.08569 1.20688 0.97222 0.94393 0.82837 0.92280 1.21853 0.96963 1.00352 0.96343 1.21446 1.01724 0.94524 0.96910 1.22151 0.88085 0.96263 1.00733 1.61224 1.29677 1.13669 1.22112 1.21796 1.04798 0.88925 0.91724 1.20965 0.81150 0.81904 0.92264 1.90537 1.54043 1.50132 1.54302 1.42023 1.66418 1.08426 1.06568 1.18973 1.48647 0.94712 0.83156 0.92918 1.26159 0.96339 0.99812 0.99411 1.69818 1.49896 1.20053 1.18007 0.85335 0.79667 0.77658 0.78653 1.18089 1.20274 1.15158 1.22267 1.03342 0.93132 0.88218 1.22348 0.95889 1.01189 0.99014 1.22906 1.00986 0.93842 1.03845 1.23045 1.03580 1.01974 0.89799 0.88510 0.91197 0.95196 0.74376 0.93002 0.89645 0.93752 0.90212 0.92267 0.93295 0.89631 0.85925 0.77455 0.91237 0.91227 0.88696 0.84807 0.89393 0.88190 0.86548 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.81 113.37 1.23 1.57 16 2 O -0.38 -7.11 8.24 -129.99 -1.07 -8.18 16 3 C 0.11 1.51 2.87 29.85 0.09 1.60 16 4 H 0.12 0.94 7.79 -2.39 -0.02 0.92 16 5 C 0.49 10.26 7.09 87.66 0.62 10.88 16 6 O -0.57 -18.60 16.17 15.96 0.26 -18.34 16 7 N -0.70 -10.70 4.97 -442.30 -2.20 -12.89 16 8 C 0.15 3.33 2.61 45.04 0.12 3.44 16 9 H 0.06 1.79 7.58 -2.39 -0.02 1.77 16 10 C -0.12 -2.59 5.58 30.67 0.17 -2.42 16 11 C -0.11 -2.95 6.09 30.65 0.19 -2.77 16 12 C 0.06 1.66 5.11 86.33 0.44 2.10 16 13 N -0.54 -15.71 4.39 -900.92 -3.96 -19.67 16 14 C 0.06 1.69 5.45 85.56 0.47 2.15 16 15 C 0.45 19.97 7.46 87.66 0.65 20.62 16 16 O -0.61 -33.54 13.92 -3.07 -0.04 -33.58 16 17 N -0.59 -27.47 5.09 -306.98 -1.56 -29.04 16 18 C -0.33 -19.04 10.16 84.04 0.85 -18.18 16 19 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 20 C -0.02 -1.06 5.50 84.92 0.47 -0.59 16 21 N -0.94 -56.73 13.96 21.66 0.30 -56.43 16 22 Si 0.97 38.23 27.74 68.60 1.90 40.13 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 26 C 0.06 1.10 4.93 86.32 0.43 1.53 16 27 C -0.17 -1.76 5.67 -10.79 -0.06 -1.82 16 28 C -0.18 -2.29 9.88 30.62 0.30 -1.99 16 29 C -0.15 -1.14 10.19 30.62 0.31 -0.83 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.42 2.88 8.60 -92.71 -0.80 2.08 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.36 5.80 -2.39 -0.01 2.35 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.93 8.12 -2.38 -0.02 1.91 16 41 H 0.12 2.81 7.98 -2.39 -0.02 2.79 16 42 H 0.39 14.71 5.76 -92.71 -0.53 14.18 16 43 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 44 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 46 H 0.13 0.99 8.03 -2.39 -0.02 0.97 16 47 H 0.09 1.50 7.06 -2.39 -0.02 1.48 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -87.12 402.71 -0.54 -87.66 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.44 Total: 35.04 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.27 Total: 15.31 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -7.42 Total: -118.02 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -0.86 Total: -60.11 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -87.12 -0.54 -87.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267924291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.179 kcal (2) G-P(sol) polarization free energy of solvation -87.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds