Wall clock time and date at job start Sat Apr 11 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00021 * 2 1 4 4 H 1.09006 * 109.47519 * 31.46675 * 3 2 1 5 5 C 1.50697 * 109.47123 * 151.46563 * 3 2 1 6 6 O 1.21284 * 120.00139 * 5.00002 * 5 3 2 7 7 N 1.34779 * 120.00191 * 184.72564 * 5 3 2 8 8 C 1.47427 * 125.64569 * 354.73987 * 7 5 3 9 9 C 1.55135 * 104.71841 * 155.81918 * 8 7 5 10 10 C 1.55150 * 101.48874 * 37.29330 * 9 8 7 11 11 C 1.47020 * 125.64763 * 175.04405 * 7 5 3 12 12 H 1.08995 * 109.88784 * 300.59724 * 11 7 5 13 13 C 1.53003 * 109.88142 * 61.60874 * 11 7 5 14 14 N 1.46905 * 109.47109 * 183.20277 * 13 11 7 15 15 C 1.46900 * 110.99644 * 185.05668 * 14 13 11 16 16 C 1.50703 * 109.46706 * 180.02562 * 15 14 13 17 17 O 1.21288 * 120.00173 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99861 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99981 * 180.02562 * 18 16 15 20 20 H 1.07990 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99888 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46978 * 60.00384 * 23 21 19 25 25 H 1.48496 * 109.46944 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46878 * 300.00245 * 23 21 19 27 27 C 1.52999 * 109.47461 * 271.46364 * 3 2 1 28 28 C 1.53000 * 117.49796 * 7.23078 * 27 3 2 29 29 C 1.52999 * 117.49968 * 298.57156 * 27 3 2 30 30 H 1.08998 * 109.47357 * 184.64735 * 1 2 3 31 31 H 1.08995 * 109.47197 * 304.64952 * 1 2 3 32 32 H 1.09008 * 109.47055 * 64.64933 * 1 2 3 33 33 H 1.08992 * 110.36596 * 274.74345 * 8 7 5 34 34 H 1.08999 * 110.36993 * 37.07265 * 8 7 5 35 35 H 1.09003 * 111.18918 * 279.18630 * 9 8 7 36 36 H 1.09001 * 110.90482 * 155.27912 * 9 8 7 37 37 H 1.08997 * 110.72271 * 205.96900 * 10 9 8 38 38 H 1.08997 * 110.71762 * 82.69996 * 10 9 8 39 39 H 1.08990 * 109.47154 * 303.20630 * 13 11 7 40 40 H 1.09010 * 109.46823 * 63.20638 * 13 11 7 41 41 H 1.00901 * 110.99904 * 61.10300 * 14 13 11 42 42 H 1.09003 * 109.47281 * 299.99706 * 15 14 13 43 43 H 1.09003 * 109.47353 * 60.00357 * 15 14 13 44 44 H 0.97005 * 120.00293 * 0.02562 * 18 16 15 45 45 H 0.97009 * 120.00004 * 180.02562 * 22 21 19 46 46 H 1.09006 * 115.55287 * 152.90057 * 27 3 2 47 47 H 1.09008 * 117.49690 * 0.02562 * 28 27 3 48 48 H 1.09003 * 117.49838 * 145.01654 * 28 27 3 49 49 H 1.08997 * 117.49783 * 214.97225 * 29 27 3 50 50 H 1.08997 * 117.49542 * 0.02562 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3572 1.9939 0.5365 5 6 3.3548 1.2566 0.6787 6 8 3.8145 0.1933 1.0380 7 7 4.0490 2.3939 0.8815 8 6 3.6661 3.7323 0.3963 9 6 4.3730 4.7190 1.3625 10 6 5.7213 3.9935 1.6130 11 6 5.3168 2.5041 1.6177 12 1 5.1820 2.1574 2.6422 13 6 6.3956 1.6698 0.9240 14 7 7.6367 1.7246 1.7081 15 6 8.7301 1.0334 1.0119 16 6 9.9836 1.1098 1.8450 17 8 9.9675 1.6832 2.9137 18 7 11.1222 0.5402 1.4029 19 6 12.2625 0.6092 2.1610 20 1 12.2482 1.1197 3.1126 21 6 13.4363 0.0215 1.7055 22 7 13.4535 -0.6001 0.5479 23 14 14.9897 0.1149 2.7387 24 1 14.7500 -0.5341 4.0527 25 1 16.0950 -0.5841 2.0352 26 1 15.3592 1.5377 2.9494 27 6 2.1840 1.7864 -1.4420 28 6 1.5815 0.9230 -2.5521 29 6 3.0988 0.9671 -2.3546 30 1 -0.3634 -1.0242 0.0833 31 1 -0.3633 0.5843 0.8454 32 1 -0.3633 0.4400 -0.9288 33 1 4.0173 3.8806 -0.6247 34 1 2.5848 3.8599 0.4488 35 1 3.8119 4.8320 2.2902 36 1 4.5322 5.6852 0.8839 37 1 6.1414 4.2820 2.5766 38 1 6.4256 4.1994 0.8070 39 1 6.0606 0.6356 0.8456 40 1 6.5783 2.0693 -0.0737 41 1 7.4979 1.3431 2.6319 42 1 8.4598 -0.0113 0.8578 43 1 8.9050 1.5096 0.0471 44 1 11.1350 0.0813 0.5484 45 1 14.2729 -1.0108 0.2300 46 1 2.1708 2.8673 -1.5819 47 1 1.0609 0.0125 -2.2551 48 1 1.1722 1.4358 -3.4225 49 1 3.6870 1.5089 -3.0951 50 1 3.5764 0.0852 -1.9277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267953553.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:21 Heat of formation + Delta-G solvation = -103.078021 kcal Electronic energy + Delta-G solvation = -30065.325350 eV Core-core repulsion = 25899.778860 eV Total energy + Delta-G solvation = -4165.546490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.64582 -40.22877 -39.70815 -38.28195 -36.85641 -36.58929 -35.80285 -33.30985 -32.83605 -31.45124 -29.73450 -28.26601 -27.01641 -26.41861 -24.95145 -23.69860 -23.24289 -22.06540 -21.80409 -21.19856 -20.15292 -19.82820 -18.40600 -18.08672 -17.74386 -17.46028 -17.01128 -16.90276 -16.51653 -16.18489 -15.97892 -15.57627 -15.37476 -15.30004 -15.11776 -14.89141 -14.58074 -14.21770 -14.02518 -13.82903 -13.63662 -13.50993 -13.25139 -13.22019 -12.96086 -12.86152 -12.63432 -12.45019 -12.36440 -12.24989 -12.13062 -12.02215 -11.85664 -11.70308 -11.54954 -11.51968 -11.35532 -10.78760 -10.49750 -10.40501 -10.04603 -9.73098 -9.42224 -8.48106 -5.97610 1.39104 1.40573 1.47546 1.52375 1.65327 2.01102 2.27990 2.69339 2.78961 3.03570 3.18263 3.43998 3.54075 3.59488 3.68492 3.83594 3.85319 3.91624 4.14599 4.20293 4.23799 4.27897 4.31035 4.31934 4.40189 4.47321 4.48887 4.50239 4.56237 4.66416 4.72169 4.77545 4.85178 4.85263 4.96747 5.05633 5.06445 5.14524 5.19664 5.26816 5.34438 5.38893 5.44480 5.78348 6.01720 6.06492 6.23870 6.49275 6.56848 7.09449 7.10425 7.52226 8.06954 8.69220 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002113 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.665086 B =13249.988170 C =13928.996338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.392 6.392 3 C 0.109 3.891 4 H 0.119 0.881 5 C 0.525 3.475 6 O -0.575 6.575 7 N -0.606 5.606 8 C 0.092 3.908 9 C -0.125 4.125 10 C -0.110 4.110 11 C 0.144 3.856 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.665 5.665 15 C 0.066 3.934 16 C 0.440 3.560 17 O -0.619 6.619 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.081 0.919 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.996 3.004 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.269 1.269 27 C -0.177 4.177 28 C -0.153 4.153 29 C -0.187 4.187 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.019 0.981 40 H 0.078 0.922 41 H 0.341 0.659 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.150 0.850 47 H 0.095 0.905 48 H 0.120 0.880 49 H 0.107 0.893 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.216 10.700 -8.342 33.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.310 6.310 3 C 0.048 3.952 4 H 0.137 0.863 5 C 0.314 3.686 6 O -0.453 6.453 7 N -0.341 5.341 8 C -0.029 4.029 9 C -0.163 4.163 10 C -0.148 4.148 11 C 0.040 3.960 12 H 0.074 0.926 13 C -0.071 4.071 14 N -0.297 5.297 15 C -0.067 4.067 16 C 0.228 3.772 17 O -0.506 6.506 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.099 0.901 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.820 3.180 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.194 1.194 27 C -0.195 4.195 28 C -0.190 4.190 29 C -0.224 4.224 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.097 0.903 41 H 0.159 0.841 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.229 0.771 45 H 0.088 0.912 46 H 0.168 0.832 47 H 0.113 0.887 48 H 0.138 0.862 49 H 0.125 0.875 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.613 10.784 -7.808 32.468 hybrid contribution 0.833 -1.647 0.309 1.871 sum -28.780 9.138 -7.499 31.112 Atomic orbital electron populations 1.23154 0.78553 1.04027 1.01851 1.88010 1.22006 1.26153 1.94867 1.21435 0.91577 0.86774 0.95426 0.86345 1.20651 0.87050 0.82390 0.78504 1.90715 1.70934 1.30896 1.52801 1.48508 1.22510 1.08515 1.54518 1.22816 1.01751 0.79386 0.98917 1.22891 0.94515 0.98788 1.00116 1.22507 0.98213 0.90458 1.03623 1.21423 0.82465 0.97809 0.94345 0.92573 1.22241 0.88832 0.98403 0.97641 1.60060 1.04415 1.59582 1.05597 1.21513 0.89462 0.98034 0.97677 1.20687 0.85697 0.82844 0.88003 1.90478 1.85920 1.48511 1.25670 1.41930 1.08542 1.49448 1.21030 1.19663 0.88191 1.35095 1.03535 0.90118 1.26112 1.02067 0.95559 0.97707 1.69679 1.30328 1.36070 1.20125 0.84942 0.76529 0.78739 0.77838 1.19708 1.19431 1.19447 1.22912 1.07235 0.99918 0.89438 1.23074 0.94948 1.01738 0.99192 1.22851 0.94437 1.01951 1.03130 0.88922 0.92539 0.91467 0.89482 0.87675 0.89965 0.87275 0.90381 0.90429 0.96290 0.90343 0.84105 0.92897 0.87583 0.77057 0.91237 0.83231 0.88694 0.86174 0.87451 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.13 113.37 1.15 1.38 16 2 O -0.39 -8.35 8.78 -129.99 -1.14 -9.49 16 3 C 0.11 1.83 2.27 29.85 0.07 1.90 16 4 H 0.12 1.20 7.35 -2.38 -0.02 1.18 16 5 C 0.53 13.21 6.68 87.66 0.59 13.79 16 6 O -0.57 -21.09 15.31 15.95 0.24 -20.85 16 7 N -0.61 -12.09 3.06 -787.61 -2.41 -14.50 16 8 C 0.09 0.91 5.37 86.93 0.47 1.38 16 9 C -0.13 -1.26 7.10 32.06 0.23 -1.04 16 10 C -0.11 -2.06 6.24 31.78 0.20 -1.86 16 11 C 0.14 3.50 3.14 45.34 0.14 3.64 16 12 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 13 C 0.06 1.76 5.05 86.30 0.44 2.19 16 14 N -0.66 -23.52 5.86 -517.90 -3.03 -26.55 16 15 C 0.07 2.54 6.16 85.56 0.53 3.06 16 16 C 0.44 22.19 7.82 87.66 0.69 22.88 16 17 O -0.62 -35.59 15.78 -3.05 -0.05 -35.64 16 18 N -0.57 -30.82 5.29 -306.99 -1.62 -32.45 16 19 C -0.34 -19.66 9.68 84.04 0.81 -18.84 16 20 H 0.08 4.99 7.16 -2.92 -0.02 4.97 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 22 N -0.92 -51.21 13.05 21.66 0.28 -50.93 16 23 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C -0.18 -2.12 4.94 -10.79 -0.05 -2.18 16 28 C -0.15 -1.82 9.11 30.62 0.28 -1.54 16 29 C -0.19 -3.18 9.79 30.62 0.30 -2.88 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.49 7.98 -2.39 -0.02 0.47 16 32 H 0.07 0.50 6.68 -2.38 -0.02 0.49 16 33 H 0.09 0.68 8.00 -2.39 -0.02 0.66 16 34 H 0.11 0.43 7.12 -2.39 -0.02 0.41 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.56 7.80 -2.39 -0.02 1.54 16 39 H 0.02 0.67 6.59 -2.39 -0.02 0.66 16 40 H 0.08 2.18 8.05 -2.38 -0.02 2.16 16 41 H 0.34 13.02 8.48 -89.69 -0.76 12.26 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.40 20.37 7.90 -92.70 -0.73 19.64 16 45 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 46 H 0.15 0.82 7.13 -2.38 -0.02 0.80 16 47 H 0.09 1.33 5.84 -2.38 -0.01 1.32 16 48 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 Total: -1.00 -80.35 402.75 0.06 -80.29 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -0.53 Total: 42.63 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 6.29 Total: 21.54 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -6.79 Total: -124.42 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: -0.95 Total: -65.98 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.35 0.06 -80.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267953553.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.787 kcal (2) G-P(sol) polarization free energy of solvation -80.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds