Wall clock time and date at job start Sat Apr 11 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.52997 * 109.47060 * 65.00157 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47401 * 185.00162 * 7 5 4 9 9 C 1.36938 * 120.00199 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99998 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00221 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00035 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47413 * 89.99789 * 13 11 9 15 15 H 1.48502 * 109.46829 * 210.00106 * 13 11 9 16 16 H 1.48503 * 109.47131 * 329.99620 * 13 11 9 17 17 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 18 18 C 1.34777 * 120.00660 * 275.00187 * 17 5 4 19 19 O 1.21281 * 119.99633 * 0.02562 * 18 17 5 20 20 C 1.50700 * 120.00373 * 179.97438 * 18 17 5 21 21 C 1.52999 * 109.47089 * 180.02562 * 20 18 17 22 22 N 1.46502 * 109.47093 * 180.02562 * 21 20 18 23 23 N 1.40166 * 126.35083 * 269.68657 * 22 21 20 24 24 C 1.29398 * 108.14185 * 179.87726 * 23 22 21 25 25 N 1.37359 * 108.82659 * 0.39061 * 24 23 22 26 26 C 1.46501 * 125.83044 * 179.77340 * 25 24 23 27 27 C 1.34819 * 108.33735 * 359.74587 * 25 24 23 28 28 O 1.21809 * 126.30390 * 179.97438 * 27 25 24 29 29 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 30 30 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 31 31 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 33 33 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 35 35 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 36 36 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 37 37 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 38 38 H 1.08997 * 109.46769 * 305.00015 * 7 5 4 39 39 H 1.09001 * 109.47207 * 64.99588 * 7 5 4 40 40 H 0.97000 * 120.00370 * 359.97438 * 8 7 5 41 41 H 0.96998 * 120.00455 * 180.02562 * 12 11 9 42 42 H 0.97010 * 119.99804 * 95.00047 * 17 5 4 43 43 H 1.09000 * 109.47081 * 300.00278 * 20 18 17 44 44 H 1.09005 * 109.46697 * 60.00148 * 20 18 17 45 45 H 1.09000 * 109.47016 * 300.00494 * 21 20 18 46 46 H 1.09005 * 109.47248 * 60.00463 * 21 20 18 47 47 H 1.07994 * 125.58737 * 180.13883 * 24 23 22 48 48 H 1.09003 * 109.47025 * 269.97281 * 26 25 24 49 49 H 1.08996 * 109.47092 * 29.97182 * 26 25 24 50 50 H 1.09001 * 109.46943 * 149.97119 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0527 7 6 2.0353 -2.8888 2.4918 8 7 1.7570 -4.3233 2.3875 9 6 2.0360 -5.1533 3.4403 10 1 2.4608 -4.7503 4.3478 11 6 1.7717 -6.5124 3.3416 12 7 1.2535 -7.0035 2.2359 13 14 2.1516 -7.6445 4.7782 14 1 0.9654 -7.7312 5.6673 15 1 2.4869 -8.9977 4.2666 16 1 3.3047 -7.1046 5.5424 17 7 2.3147 -2.8420 0.0626 18 6 1.7815 -2.7779 -1.1735 19 8 0.7394 -2.1844 -1.3543 20 6 2.4808 -3.4425 -2.3312 21 6 1.6723 -3.2203 -3.6110 22 7 2.3518 -3.8670 -4.7364 23 7 3.3083 -3.2812 -5.5770 24 6 3.6757 -4.1657 -6.4470 25 7 2.9825 -5.3289 -6.2165 26 6 3.1070 -6.5686 -6.9872 27 6 2.1684 -5.1351 -5.1595 28 8 1.4072 -5.9539 -4.6758 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.1263 -0.6442 1.2952 37 1 1.6053 -0.2617 2.1370 38 1 3.0996 -2.7374 2.6721 39 1 1.4633 -2.4668 3.3182 40 1 1.3751 -4.6852 1.5726 41 1 1.0685 -7.9532 2.1671 42 1 3.1485 -3.3163 0.2072 43 1 3.4751 -3.0122 -2.4507 44 1 2.5685 -4.5116 -2.1374 45 1 0.6778 -3.6503 -3.4918 46 1 1.5851 -2.1511 -3.8047 47 1 4.4047 -4.0131 -7.2291 48 1 2.3928 -6.5578 -7.8106 49 1 4.1186 -6.6492 -7.3848 50 1 2.9021 -7.4211 -6.3397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268110799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:27 Heat of formation + Delta-G solvation = 11.927628 kcal Electronic energy + Delta-G solvation = -30362.914586 eV Core-core repulsion = 26234.647867 eV Total energy + Delta-G solvation = -4128.266719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53812 -39.92064 -37.33518 -36.92673 -35.66518 -34.92835 -33.41061 -32.83665 -31.22105 -30.01462 -28.94435 -27.61836 -26.85829 -25.55058 -24.85226 -22.88785 -22.47873 -21.35230 -20.71903 -20.00508 -19.62829 -17.90400 -17.26992 -16.93367 -16.63104 -16.25447 -15.75438 -15.71142 -15.54319 -14.84377 -14.61054 -14.45358 -14.03595 -13.80437 -13.67089 -13.37966 -13.05727 -13.01579 -12.99698 -12.78501 -12.74990 -12.36164 -12.08895 -12.03026 -12.00821 -11.88193 -11.48690 -11.25476 -11.01324 -10.94596 -10.80826 -10.50632 -10.34472 -10.27332 -10.22186 -10.20313 -9.97124 -9.70503 -9.44560 -8.90579 -8.68599 -8.56865 -6.94766 -5.76279 -3.06520 1.60481 1.75654 2.57758 2.91045 2.95056 3.43334 3.48266 3.50293 3.59024 4.24657 4.48967 4.57332 4.77092 4.81502 4.90612 4.96349 5.07507 5.14359 5.20179 5.20903 5.22391 5.44397 5.54943 5.58195 5.62660 5.68086 5.72558 5.75869 5.86990 5.90500 5.99636 6.06575 6.09027 6.13192 6.14687 6.23900 6.32225 6.37178 6.47448 6.51538 6.69058 6.69720 6.87620 6.99669 7.46205 7.69043 7.89316 7.94740 8.41162 8.56716 9.52963 10.09114 10.44344 11.45776 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.007445 B = 0.003497 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.254686 B = 8004.090018 C =11207.140405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.091 0.909 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.244 4.244 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.707 5.707 18 C 0.522 3.478 19 O -0.539 6.539 20 C -0.162 4.162 21 C 0.180 3.820 22 N -0.450 5.450 23 N -0.281 5.281 24 C 0.249 3.751 25 N -0.564 5.564 26 C 0.099 3.901 27 C 0.640 3.360 28 O -0.544 6.544 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.023 0.977 39 H 0.032 0.968 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.404 0.596 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.229 0.771 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 10.590 -19.447 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.031 3.969 6 H 0.109 0.891 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.375 4.375 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.577 5.577 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.357 5.357 18 C 0.308 3.692 19 O -0.418 6.418 20 C -0.203 4.203 21 C 0.059 3.941 22 N -0.271 5.271 23 N -0.102 5.102 24 C -0.050 4.050 25 N -0.294 5.294 26 C -0.043 4.043 27 C 0.340 3.660 28 O -0.417 6.417 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.238 0.762 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.245 0.755 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.440 11.331 -18.650 22.752 hybrid contribution 0.604 -1.853 0.330 1.977 sum 7.044 9.478 -18.319 21.795 Atomic orbital electron populations 1.21830 0.94936 1.03146 0.99600 1.21134 0.96584 0.94738 0.98575 1.21872 1.00291 0.97074 1.01116 1.22017 1.00783 0.94899 0.98381 1.21376 0.98498 0.90985 0.86002 0.89072 1.20962 0.97767 0.86499 0.93191 1.42347 1.76613 1.00909 1.17729 1.19200 1.35114 0.88934 0.94286 0.91202 1.24752 1.01670 0.96947 0.97369 1.69664 1.49256 1.12836 1.25963 0.86205 0.77856 0.80436 0.81746 1.21703 1.21797 1.20785 1.45949 1.27299 1.55265 1.07195 1.20091 0.85340 0.79845 0.83960 1.90693 1.23121 1.43384 1.84576 1.22036 1.00968 1.03751 0.93539 1.21192 0.94447 0.98901 0.79562 1.49059 1.38158 1.10590 1.29318 1.76968 1.07286 1.21745 1.04186 1.25889 0.97749 0.81898 0.99487 1.45965 1.38807 1.14117 1.30506 1.21813 1.03143 0.83615 0.95761 1.16854 0.83290 0.84065 0.81829 1.91150 1.40566 1.47660 1.62280 0.94379 0.93869 0.90453 0.90680 0.93372 0.93251 0.93176 0.92047 0.91218 0.95940 0.95011 0.77970 0.93442 0.76171 0.88565 0.88092 0.87727 0.87986 0.75481 0.90964 0.89402 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.04 37.15 0.30 -1.66 16 2 C -0.09 -1.23 2.38 -90.62 -0.22 -1.44 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.12 -1.66 4.36 -26.73 -0.12 -1.77 16 5 C 0.14 2.23 2.33 -67.93 -0.16 2.07 16 6 H 0.09 1.69 5.92 -51.93 -0.31 1.39 16 7 C 0.14 2.80 5.82 -4.04 -0.02 2.77 16 8 N -0.73 -18.19 5.43 -59.91 -0.33 -18.51 16 9 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 13 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 N -0.71 -10.93 4.47 -53.81 -0.24 -11.17 16 18 C 0.52 7.96 6.39 -10.99 -0.07 7.89 16 19 O -0.54 -9.13 10.94 5.56 0.06 -9.07 16 20 C -0.16 -2.13 6.02 -27.88 -0.17 -2.30 16 21 C 0.18 2.37 5.68 -4.04 -0.02 2.35 16 22 N -0.45 -5.88 3.63 -65.12 -0.24 -6.12 16 23 N -0.28 -2.97 12.53 29.87 0.37 -2.60 16 24 C 0.25 1.74 12.66 -89.12 -1.13 0.61 16 25 N -0.56 -5.27 3.14 -130.11 -0.41 -5.68 16 26 C 0.10 0.54 11.05 59.85 0.66 1.20 16 27 C 0.64 9.16 8.60 -86.73 -0.75 8.42 16 28 O -0.54 -10.08 17.71 5.09 0.09 -9.99 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.28 4.76 -51.93 -0.25 1.03 16 32 H 0.07 1.09 5.19 -51.93 -0.27 0.82 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.39 10.30 7.33 -40.82 -0.30 10.00 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.40 6.08 8.60 -40.82 -0.35 5.73 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.10 1.55 8.06 -51.93 -0.42 1.13 16 46 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 47 H 0.23 0.27 8.06 -52.49 -0.42 -0.15 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 50 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -36.43 405.88 -8.66 -45.09 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.20 Total: 12.65 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -1.59 Total: 9.47 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -0.11 Total: -71.74 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.15 Total: -19.06 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.43 -8.66 -45.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268110799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.015 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds