Wall clock time and date at job start Sat Apr 11 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34644 * 117.00188 * 2 1 4 4 O 1.21510 * 119.99662 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99861 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.46873 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00263 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99448 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63623 * 359.72466 * 9 7 6 11 11 C 1.52761 * 109.00754 * 233.58047 * 10 9 7 12 12 C 1.53038 * 109.38451 * 305.58267 * 11 10 9 13 13 N 1.46494 * 109.46198 * 181.26057 * 12 11 10 14 14 C 1.36936 * 120.00094 * 299.93469 * 13 12 11 15 15 H 1.07999 * 120.00213 * 15.95306 * 14 13 12 16 16 C 1.38819 * 120.00252 * 195.95225 * 14 13 12 17 17 N 1.31613 * 119.99486 * 21.40692 * 16 14 13 18 18 Si 1.86801 * 120.00146 * 201.40153 * 16 14 13 19 19 H 1.48501 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46767 * 120.00174 * 18 16 14 21 21 H 1.48495 * 109.47171 * 240.00256 * 18 16 14 22 22 C 1.46502 * 119.99966 * 119.93303 * 13 12 11 23 23 C 1.52998 * 109.47214 * 84.12136 * 22 13 12 24 24 C 1.52998 * 117.50022 * 243.62497 * 23 22 13 25 25 C 1.53001 * 117.50097 * 175.00050 * 23 22 13 26 26 C 1.53047 * 109.53486 * 61.24016 * 12 11 10 27 27 C 1.46928 * 120.62825 * 179.97438 * 9 7 6 28 28 H 1.08999 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47408 * 300.00159 * 1 2 3 30 30 H 1.09000 * 109.47069 * 59.99941 * 1 2 3 31 31 H 0.96995 * 119.99973 * 0.02562 * 5 3 2 32 32 H 1.09008 * 109.47053 * 300.00163 * 6 5 3 33 33 H 1.08995 * 109.46813 * 59.99923 * 6 5 3 34 34 H 1.08998 * 109.58406 * 353.41533 * 10 9 7 35 35 H 1.09001 * 109.59036 * 113.83937 * 10 9 7 36 36 H 1.09006 * 109.56149 * 185.54557 * 11 10 9 37 37 H 1.09004 * 109.38582 * 65.51419 * 11 10 9 38 38 H 1.08997 * 109.46291 * 301.22428 * 12 11 10 39 39 H 0.97007 * 119.99696 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.46797 * 204.12106 * 22 13 12 41 41 H 1.08996 * 109.47087 * 324.11869 * 22 13 12 42 42 H 1.09004 * 115.54927 * 29.32788 * 23 22 13 43 43 H 1.09002 * 117.49289 * 359.97438 * 24 23 22 44 44 H 1.08991 * 117.50138 * 145.01924 * 24 23 22 45 45 H 1.08999 * 117.49651 * 214.97794 * 25 23 22 46 46 H 1.09003 * 117.49414 * 359.97438 * 25 23 22 47 47 H 1.09000 * 109.49471 * 178.68448 * 26 12 11 48 48 H 1.08999 * 109.52286 * 58.60366 * 26 12 11 49 49 H 1.09000 * 109.58914 * 246.16004 * 27 9 7 50 50 H 1.08997 * 109.58460 * 6.44152 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5755 0.0011 7 6 5.5682 2.3780 0.0010 8 8 6.0318 1.2574 0.0009 9 7 6.3892 3.4469 0.0009 10 6 5.8426 4.8107 -0.0051 11 6 6.4578 5.5881 -1.1673 12 6 7.9838 5.5227 -1.0710 13 7 8.5755 6.2928 -2.1677 14 6 8.3119 5.9482 -3.4665 15 1 7.4846 5.2923 -3.6940 16 6 9.1080 6.4420 -4.4910 17 7 10.3240 6.8728 -4.2300 18 14 8.4536 6.4948 -6.2398 19 1 7.0696 5.9572 -6.2668 20 1 8.4484 7.8986 -6.7241 21 1 9.3223 5.6712 -7.1185 22 6 9.4493 7.4317 -1.8749 23 6 10.8738 6.9312 -1.6275 24 6 11.4680 7.1514 -0.2349 25 6 11.9658 7.9825 -1.4192 26 6 8.4405 4.0651 -1.1670 27 6 7.8478 3.2705 0.0013 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9374 0.4567 0.0005 32 1 3.7816 3.1328 -0.8889 33 1 3.7810 3.1323 0.8911 34 1 4.7602 4.7700 -0.1268 35 1 6.0884 5.3071 0.9337 36 1 6.1347 6.6282 -1.1224 37 1 6.1334 5.1468 -2.1098 38 1 8.3058 5.9421 -0.1179 39 1 10.8802 7.2182 -4.9458 40 1 9.4473 8.1182 -2.7216 41 1 9.0865 7.9491 -0.9869 42 1 11.1490 6.0171 -2.1536 43 1 10.8442 7.6533 0.5048 44 1 12.1342 6.3822 0.1554 45 1 12.9594 7.7598 -1.8080 46 1 11.6693 9.0307 -1.4589 47 1 9.5287 4.0212 -1.1218 48 1 8.0980 3.6373 -2.1092 49 1 8.2602 3.6389 0.9407 50 1 8.0880 2.2135 -0.1135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269616000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:36 Heat of formation + Delta-G solvation = -55.369066 kcal Electronic energy + Delta-G solvation = -30469.710604 eV Core-core repulsion = 26306.232930 eV Total energy + Delta-G solvation = -4163.477674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.80688 -40.04719 -37.92041 -36.86584 -36.47836 -34.80998 -34.60541 -32.26086 -31.04506 -29.99726 -28.77029 -27.08137 -26.12542 -24.78632 -22.87638 -22.28581 -21.53108 -21.50751 -20.29351 -19.58177 -19.33181 -18.62180 -17.30899 -16.88904 -16.77113 -16.27960 -16.07919 -15.62656 -15.30138 -14.66315 -14.40064 -14.24793 -14.11855 -13.82614 -13.68505 -13.64054 -13.30166 -13.25751 -12.88605 -12.60117 -12.32833 -12.24383 -11.99374 -11.64664 -11.33519 -11.03188 -10.93463 -10.90490 -10.86337 -10.79150 -10.68291 -10.66113 -10.32152 -10.12367 -9.95888 -9.85095 -9.70599 -9.55599 -9.18642 -8.80863 -8.56893 -8.36331 -6.86328 -5.77664 -3.14630 1.83367 2.44120 2.58952 2.99979 3.36319 3.46240 3.46577 4.04361 4.25710 4.46090 4.87085 4.90114 4.94377 4.96328 5.02068 5.10166 5.13142 5.21666 5.29930 5.39837 5.44802 5.57596 5.71940 5.75891 5.83930 5.89781 5.96533 5.97041 6.04783 6.09285 6.18268 6.30429 6.33431 6.37347 6.55073 6.55166 6.66333 6.67475 6.88658 6.96837 7.02840 7.14200 7.26127 7.35592 7.48382 7.72822 7.82346 7.99364 8.07793 8.34092 9.20179 9.84189 10.30291 11.26577 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002664 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.722589 B =10509.500147 C =11696.128955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.574 6.574 5 N -0.697 5.697 6 C 0.118 3.882 7 C 0.510 3.490 8 O -0.545 6.545 9 N -0.596 5.596 10 C 0.103 3.897 11 C -0.144 4.144 12 C 0.181 3.819 13 N -0.588 5.588 14 C -0.250 4.250 15 H 0.070 0.930 16 C 0.002 3.998 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.294 1.294 22 C 0.206 3.794 23 C -0.080 4.080 24 C -0.224 4.224 25 C -0.184 4.184 26 C -0.137 4.137 27 C 0.112 3.888 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.418 0.582 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.251 0.749 40 H 0.081 0.919 41 H 0.009 0.991 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 -6.816 11.152 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.463 6.463 5 N -0.359 5.359 6 C -0.008 4.008 7 C 0.297 3.703 8 O -0.424 6.424 9 N -0.328 5.328 10 C -0.020 4.020 11 C -0.184 4.184 12 C 0.073 3.927 13 N -0.307 5.307 14 C -0.380 4.380 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.221 1.221 22 C 0.080 3.920 23 C -0.101 4.101 24 C -0.262 4.262 25 C -0.222 4.222 26 C -0.177 4.177 27 C -0.010 4.010 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.257 0.743 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.027 0.973 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.326 -6.836 11.017 17.216 hybrid contribution 0.071 -0.120 -1.100 1.109 sum -11.255 -6.957 9.916 16.535 Atomic orbital electron populations 1.23213 0.74205 1.03527 1.02829 1.86252 1.24298 1.30815 1.87048 1.17963 0.83072 0.82288 0.76402 1.91014 1.64668 1.34794 1.55785 1.44235 1.03237 1.10532 1.77919 1.21097 0.89815 0.84595 1.05269 1.20246 0.88360 0.84938 0.76747 1.90684 1.77107 1.23471 1.51106 1.48079 1.07342 1.05989 1.71437 1.21876 0.98278 0.81452 1.00357 1.22344 0.98981 0.99787 0.97332 1.20189 0.90615 0.90356 0.91559 1.44153 1.54282 1.30949 1.01335 1.19101 1.09299 1.27497 0.82060 0.91175 1.24781 0.95140 1.02136 0.97529 1.70188 1.06029 1.46283 1.31046 0.86385 0.78408 0.77263 0.85690 1.20585 1.21770 1.22084 1.20272 0.85944 0.88928 0.96841 1.23021 0.95391 0.99885 0.91787 1.23104 1.05843 1.04008 0.93224 1.22602 0.99827 0.96926 1.02846 1.22392 1.00808 0.97289 0.97228 1.21805 0.77636 1.02059 0.99481 0.87912 0.91785 0.91729 0.74298 0.87757 0.87999 0.90259 0.91063 0.90807 0.91165 0.92815 0.93878 0.90092 0.97308 0.87189 0.90625 0.90892 0.90676 0.90530 0.90875 0.91267 0.91703 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.99 10.62 -40.34 -0.43 -4.42 16 3 C 0.65 8.16 8.75 54.05 0.47 8.63 16 4 O -0.57 -8.50 16.13 -19.28 -0.31 -8.81 16 5 N -0.70 -8.09 5.53 -66.46 -0.37 -8.46 16 6 C 0.12 1.30 4.50 -5.19 -0.02 1.28 16 7 C 0.51 6.73 7.77 -10.99 -0.09 6.65 16 8 O -0.55 -8.68 15.08 5.56 0.08 -8.60 16 9 N -0.60 -7.70 2.98 -173.01 -0.52 -8.21 16 10 C 0.10 1.17 6.31 -3.93 -0.02 1.14 16 11 C -0.14 -2.15 5.29 -26.83 -0.14 -2.29 16 12 C 0.18 3.14 2.59 -67.89 -0.18 2.96 16 13 N -0.59 -12.69 2.47 -165.62 -0.41 -13.10 16 14 C -0.25 -6.12 8.42 -15.06 -0.13 -6.24 16 15 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 16 C 0.00 0.06 4.89 -17.43 -0.09 -0.02 16 17 N -0.89 -23.34 9.05 55.49 0.50 -22.84 16 18 Si 0.89 20.81 29.61 -169.99 -5.03 15.78 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 C 0.21 4.45 5.09 -4.04 -0.02 4.43 16 23 C -0.08 -1.67 4.45 -90.62 -0.40 -2.07 16 24 C -0.22 -3.93 10.18 -26.73 -0.27 -4.21 16 25 C -0.18 -3.45 10.25 -26.73 -0.27 -3.73 16 26 C -0.14 -2.32 5.31 -26.59 -0.14 -2.46 16 27 C 0.11 1.57 6.44 -3.69 -0.02 1.55 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.42 4.77 7.55 -40.82 -0.31 4.46 16 32 H 0.10 1.12 7.68 -51.92 -0.40 0.72 16 33 H 0.10 0.97 7.95 -51.93 -0.41 0.56 16 34 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.19 7.08 -51.93 -0.37 0.82 16 38 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 39 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.08 2.00 6.32 -51.93 -0.33 1.67 16 41 H 0.01 0.18 7.78 -51.93 -0.40 -0.23 16 42 H 0.11 2.68 7.49 -51.93 -0.39 2.29 16 43 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.07 1.34 7.67 -51.93 -0.40 0.95 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -29.29 398.57 -8.96 -38.25 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.23 Total: 7.29 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.26 Total: 7.10 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.79 Total: -52.61 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.66 Total: -21.82 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.29 -8.96 -38.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269616000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.117 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds