Wall clock time and date at job start Sat Apr 11 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34644 * 117.00188 * 2 1 4 4 O 1.21510 * 119.99662 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99861 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.46873 * 180.02562 * 6 5 3 8 8 O 1.21276 * 120.00263 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99448 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63623 * 359.72466 * 9 7 6 11 11 C 1.52761 * 109.00754 * 233.58047 * 10 9 7 12 12 C 1.53038 * 109.38451 * 305.58267 * 11 10 9 13 13 N 1.46494 * 109.46198 * 181.26057 * 12 11 10 14 14 C 1.36936 * 120.00094 * 299.93469 * 13 12 11 15 15 H 1.07999 * 120.00213 * 15.95306 * 14 13 12 16 16 C 1.38819 * 120.00252 * 195.95225 * 14 13 12 17 17 N 1.31613 * 119.99486 * 21.40692 * 16 14 13 18 18 Si 1.86801 * 120.00146 * 201.40153 * 16 14 13 19 19 H 1.48501 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46767 * 120.00174 * 18 16 14 21 21 H 1.48495 * 109.47171 * 240.00256 * 18 16 14 22 22 C 1.46502 * 119.99966 * 119.93303 * 13 12 11 23 23 C 1.52998 * 109.47214 * 84.12136 * 22 13 12 24 24 C 1.52998 * 117.50022 * 243.62497 * 23 22 13 25 25 C 1.53001 * 117.50097 * 175.00050 * 23 22 13 26 26 C 1.53047 * 109.53486 * 61.24016 * 12 11 10 27 27 C 1.46928 * 120.62825 * 179.97438 * 9 7 6 28 28 H 1.08999 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47408 * 300.00159 * 1 2 3 30 30 H 1.09000 * 109.47069 * 59.99941 * 1 2 3 31 31 H 0.96995 * 119.99973 * 0.02562 * 5 3 2 32 32 H 1.09008 * 109.47053 * 300.00163 * 6 5 3 33 33 H 1.08995 * 109.46813 * 59.99923 * 6 5 3 34 34 H 1.08998 * 109.58406 * 353.41533 * 10 9 7 35 35 H 1.09001 * 109.59036 * 113.83937 * 10 9 7 36 36 H 1.09006 * 109.56149 * 185.54557 * 11 10 9 37 37 H 1.09004 * 109.38582 * 65.51419 * 11 10 9 38 38 H 1.08997 * 109.46291 * 301.22428 * 12 11 10 39 39 H 0.97007 * 119.99696 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.46797 * 204.12106 * 22 13 12 41 41 H 1.08996 * 109.47087 * 324.11869 * 22 13 12 42 42 H 1.09004 * 115.54927 * 29.32788 * 23 22 13 43 43 H 1.09002 * 117.49289 * 359.97438 * 24 23 22 44 44 H 1.08991 * 117.50138 * 145.01924 * 24 23 22 45 45 H 1.08999 * 117.49651 * 214.97794 * 25 23 22 46 46 H 1.09003 * 117.49414 * 359.97438 * 25 23 22 47 47 H 1.09000 * 109.49471 * 178.68448 * 26 12 11 48 48 H 1.08999 * 109.52286 * 58.60366 * 26 12 11 49 49 H 1.09000 * 109.58914 * 246.16004 * 27 9 7 50 50 H 1.08997 * 109.58460 * 6.44152 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0742 2.5755 0.0011 7 6 5.5682 2.3780 0.0010 8 8 6.0318 1.2574 0.0009 9 7 6.3892 3.4469 0.0009 10 6 5.8426 4.8107 -0.0051 11 6 6.4578 5.5881 -1.1673 12 6 7.9838 5.5227 -1.0710 13 7 8.5755 6.2928 -2.1677 14 6 8.3119 5.9482 -3.4665 15 1 7.4846 5.2923 -3.6940 16 6 9.1080 6.4420 -4.4910 17 7 10.3240 6.8728 -4.2300 18 14 8.4536 6.4948 -6.2398 19 1 7.0696 5.9572 -6.2668 20 1 8.4484 7.8986 -6.7241 21 1 9.3223 5.6712 -7.1185 22 6 9.4493 7.4317 -1.8749 23 6 10.8738 6.9312 -1.6275 24 6 11.4680 7.1514 -0.2349 25 6 11.9658 7.9825 -1.4192 26 6 8.4405 4.0651 -1.1670 27 6 7.8478 3.2705 0.0013 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9374 0.4567 0.0005 32 1 3.7816 3.1328 -0.8889 33 1 3.7810 3.1323 0.8911 34 1 4.7602 4.7700 -0.1268 35 1 6.0884 5.3071 0.9337 36 1 6.1347 6.6282 -1.1224 37 1 6.1334 5.1468 -2.1098 38 1 8.3058 5.9421 -0.1179 39 1 10.8802 7.2182 -4.9458 40 1 9.4473 8.1182 -2.7216 41 1 9.0865 7.9491 -0.9869 42 1 11.1490 6.0171 -2.1536 43 1 10.8442 7.6533 0.5048 44 1 12.1342 6.3822 0.1554 45 1 12.9594 7.7598 -1.8080 46 1 11.6693 9.0307 -1.4589 47 1 9.5287 4.0212 -1.1218 48 1 8.0980 3.6373 -2.1092 49 1 8.2602 3.6389 0.9407 50 1 8.0880 2.2135 -0.1135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269616000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:34 Heat of formation + Delta-G solvation = -73.543991 kcal Electronic energy + Delta-G solvation = -30470.498728 eV Core-core repulsion = 26306.232930 eV Total energy + Delta-G solvation = -4164.265798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.76314 -41.08162 -39.28358 -38.01192 -37.64514 -36.13046 -35.76315 -33.85225 -32.26085 -31.50636 -29.67346 -28.00520 -27.74099 -26.17100 -24.04680 -23.72366 -22.96844 -22.49524 -21.56690 -21.06890 -20.54600 -19.73305 -18.31453 -18.14649 -17.75357 -17.62588 -17.08472 -16.94331 -16.61757 -16.12615 -15.62952 -15.46205 -15.18175 -15.12416 -15.04717 -14.97036 -14.59462 -14.37463 -14.00241 -13.73266 -13.46264 -13.31026 -13.16670 -13.07969 -12.95258 -12.68112 -12.44678 -12.28838 -12.21660 -12.08823 -11.99096 -11.87510 -11.80672 -11.77854 -11.47837 -11.26865 -10.98642 -10.78278 -10.49625 -10.45966 -10.10066 -9.67909 -8.64858 -7.71440 -5.06460 0.99959 1.41916 1.45286 1.51416 1.56657 1.64127 2.00123 2.57588 3.22267 3.30467 3.36011 3.39346 3.62201 3.98054 4.16488 4.22290 4.23378 4.26126 4.31629 4.36406 4.39318 4.40728 4.46964 4.50983 4.58055 4.69691 4.72585 4.83206 4.85048 4.88799 4.90142 4.95423 4.98262 5.10631 5.16312 5.22354 5.30053 5.43915 5.45535 5.52958 5.61124 5.67344 5.75786 5.85654 6.03274 6.22308 6.32328 6.45296 6.96133 7.16292 7.30288 8.04920 8.44243 9.29783 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002664 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.722589 B =10509.500147 C =11696.128955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.650 3.350 4 O -0.599 6.599 5 N -0.695 5.695 6 C 0.122 3.878 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.597 5.597 10 C 0.109 3.891 11 C -0.136 4.136 12 C 0.176 3.824 13 N -0.599 5.599 14 C -0.238 4.238 15 H 0.063 0.937 16 C -0.046 4.046 17 N -0.907 5.907 18 Si 0.938 3.062 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.304 1.304 22 C 0.212 3.788 23 C -0.100 4.100 24 C -0.191 4.191 25 C -0.185 4.185 26 C -0.125 4.125 27 C 0.123 3.877 28 H 0.135 0.865 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.419 0.581 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.241 0.759 40 H 0.044 0.956 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.034 0.966 49 H 0.090 0.910 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 -6.746 13.690 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.403 3.597 4 O -0.490 6.490 5 N -0.358 5.358 6 C -0.003 4.003 7 C 0.300 3.700 8 O -0.456 6.456 9 N -0.329 5.329 10 C -0.013 4.013 11 C -0.176 4.176 12 C 0.070 3.930 13 N -0.319 5.319 14 C -0.369 4.369 15 H 0.081 0.919 16 C -0.242 4.242 17 N -0.554 5.554 18 Si 0.770 3.230 19 H -0.202 1.202 20 H -0.224 1.224 21 H -0.233 1.233 22 C 0.087 3.913 23 C -0.121 4.121 24 C -0.228 4.228 25 C -0.223 4.223 26 C -0.165 4.165 27 C 0.000 4.000 28 H 0.153 0.847 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.258 0.742 32 H 0.128 0.872 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.108 0.892 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.917 -6.778 13.576 19.928 hybrid contribution 0.528 -0.202 -1.871 1.955 sum -12.390 -6.980 11.705 18.418 Atomic orbital electron populations 1.23543 0.72387 1.05731 1.02836 1.86267 1.26097 1.29862 1.86672 1.18058 0.83142 0.82457 0.76028 1.90991 1.65201 1.35695 1.57136 1.44274 1.03115 1.10843 1.77526 1.21155 0.87905 0.84661 1.06602 1.20584 0.89231 0.84374 0.75836 1.90676 1.77800 1.24709 1.52437 1.48125 1.06799 1.06789 1.71139 1.21985 0.99495 0.79970 0.99832 1.22198 0.96929 1.00632 0.97871 1.20443 0.92043 0.89771 0.90784 1.44323 1.54536 1.31610 1.01458 1.19191 1.08164 1.25889 0.83615 0.91914 1.25266 0.95669 1.03528 0.99721 1.70336 1.06542 1.47744 1.30777 0.85647 0.77790 0.76456 0.83136 1.20159 1.22360 1.23256 1.20110 0.86644 0.88482 0.96086 1.22594 0.95597 0.99114 0.94780 1.23125 1.04601 1.03142 0.91892 1.22643 0.99016 0.96941 1.03668 1.22189 0.99714 0.97555 0.97038 1.21608 0.78535 1.00875 0.98950 0.84673 0.91577 0.91960 0.74224 0.87173 0.85688 0.87512 0.88153 0.90275 0.93809 0.91026 0.94959 0.93792 0.95071 0.91409 0.88446 0.89667 0.90820 0.89857 0.92757 0.94701 0.89183 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 10.56 113.37 1.20 1.82 16 2 O -0.38 -7.52 10.62 -55.54 -0.59 -8.11 16 3 C 0.65 15.31 8.75 129.79 1.14 16.45 16 4 O -0.60 -16.79 16.13 19.81 0.32 -16.47 16 5 N -0.70 -15.01 5.53 -594.60 -3.29 -18.30 16 6 C 0.12 2.39 4.50 85.63 0.39 2.78 16 7 C 0.51 12.50 7.77 87.66 0.68 13.18 16 8 O -0.58 -17.74 15.08 -3.02 -0.05 -17.79 16 9 N -0.60 -13.96 2.98 -819.68 -2.44 -16.40 16 10 C 0.11 2.07 6.31 86.22 0.54 2.61 16 11 C -0.14 -3.79 5.29 30.53 0.16 -3.63 16 12 C 0.18 5.90 2.59 45.02 0.12 6.01 16 13 N -0.60 -26.00 2.47 -677.89 -1.67 -27.68 16 14 C -0.24 -11.92 8.42 84.04 0.71 -11.21 16 15 H 0.06 3.19 6.91 -2.91 -0.02 3.17 16 16 C -0.05 -2.42 4.89 84.86 0.41 -2.01 16 17 N -0.91 -49.43 9.05 21.65 0.20 -49.23 16 18 Si 0.94 44.15 29.61 68.60 2.03 46.18 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 22 C 0.21 9.16 5.09 86.38 0.44 9.60 16 23 C -0.10 -4.17 4.45 -10.79 -0.05 -4.22 16 24 C -0.19 -6.21 10.18 30.59 0.31 -5.90 16 25 C -0.18 -6.77 10.25 30.60 0.31 -6.46 16 26 C -0.12 -4.22 5.31 30.69 0.16 -4.06 16 27 C 0.12 3.25 6.44 86.37 0.56 3.80 16 28 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.42 9.06 7.55 -92.71 -0.70 8.36 16 32 H 0.11 2.08 7.68 -2.38 -0.02 2.06 16 33 H 0.13 1.91 7.95 -2.39 -0.02 1.89 16 34 H 0.11 1.51 5.93 -2.39 -0.01 1.50 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.04 1.45 7.08 -2.38 -0.02 1.43 16 38 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 39 H 0.24 13.17 8.31 -92.70 -0.77 12.40 16 40 H 0.04 2.21 6.32 -2.39 -0.02 2.20 16 41 H 0.03 1.18 7.78 -2.39 -0.02 1.17 16 42 H 0.07 3.42 7.49 -2.38 -0.02 3.41 16 43 H 0.10 2.79 8.03 -2.39 -0.02 2.77 16 44 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.03 1.39 7.67 -2.39 -0.02 1.37 16 49 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.08 2.19 7.00 -2.39 -0.02 2.18 16 Total: -1.00 -66.11 398.57 1.83 -64.28 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.24 Total: 24.74 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.08 Total: 18.78 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -7.21 Total: -111.62 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.32 Total: -42.36 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.11 1.83 -64.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269616000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.262 kcal (2) G-P(sol) polarization free energy of solvation -66.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds