Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99405 * 2 1 4 4 C 1.46891 * 111.00365 * 123.95318 * 2 1 3 5 5 C 1.52999 * 109.47246 * 66.04946 * 4 2 1 6 6 N 1.46500 * 109.47284 * 180.02562 * 5 4 2 7 7 C 1.35031 * 124.89056 * 125.00000 * 6 5 4 8 8 C 1.35362 * 107.23390 * 180.02562 * 7 6 5 9 9 C 1.41505 * 105.50240 * 0.26209 * 8 7 6 10 10 C 1.47702 * 126.52071 * 179.69965 * 9 8 7 11 11 O 1.21573 * 120.00038 * 353.46242 * 10 9 8 12 12 N 1.34774 * 120.00286 * 173.46084 * 10 9 8 13 13 C 1.46503 * 119.99784 * 3.52994 * 12 10 9 14 14 C 1.46502 * 120.00253 * 183.53476 * 12 10 9 15 15 C 1.52999 * 109.47299 * 89.99900 * 14 12 10 16 16 H 1.08994 * 109.47348 * 59.99716 * 15 14 12 17 17 O 1.42902 * 109.46816 * 299.99781 * 15 14 12 18 18 C 1.52996 * 109.46907 * 180.02562 * 15 14 12 19 19 N 1.46507 * 109.47185 * 185.00073 * 18 15 14 20 20 C 1.36936 * 120.00118 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00186 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99944 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00119 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47052 * 90.00022 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99914 * 24 22 20 27 27 H 1.48492 * 109.47048 * 330.00199 * 24 22 20 28 28 N 1.28477 * 124.88248 * 305.01976 * 6 5 4 29 29 H 1.09002 * 109.47090 * 296.04218 * 1 2 3 30 30 H 1.08996 * 109.47392 * 56.04850 * 1 2 3 31 31 H 1.09007 * 109.46726 * 176.04638 * 1 2 3 32 32 H 1.09005 * 109.46731 * 183.95551 * 3 2 1 33 33 H 1.09001 * 109.46987 * 303.95472 * 3 2 1 34 34 H 1.08999 * 109.47293 * 63.95326 * 3 2 1 35 35 H 1.09001 * 109.47016 * 306.05046 * 4 2 1 36 36 H 1.09003 * 109.47440 * 186.04957 * 4 2 1 37 37 H 1.08997 * 109.47673 * 59.99805 * 5 4 2 38 38 H 1.09005 * 109.47188 * 299.99882 * 5 4 2 39 39 H 1.08003 * 126.38369 * 359.97438 * 7 6 5 40 40 H 1.07994 * 127.25167 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.46940 * 84.09723 * 13 12 10 42 42 H 1.09005 * 109.47155 * 204.09356 * 13 12 10 43 43 H 1.09000 * 109.47053 * 324.09258 * 13 12 10 44 44 H 1.09006 * 109.46687 * 209.99873 * 14 12 10 45 45 H 1.08994 * 109.47152 * 329.99496 * 14 12 10 46 46 H 0.96692 * 113.99969 * 299.99912 * 17 15 14 47 47 H 1.09005 * 109.47289 * 304.99733 * 18 15 14 48 48 H 1.09000 * 109.47269 * 64.99847 * 18 15 14 49 49 H 0.97001 * 119.99512 * 359.97438 * 19 18 15 50 50 H 0.97000 * 120.00264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6317 -2.2426 0.9703 6 7 2.1562 -3.0063 2.1050 7 6 1.4179 -3.8026 2.9076 8 6 2.2558 -4.3287 3.8313 9 6 3.5314 -3.7934 3.5333 10 6 4.7883 -4.0593 4.2620 11 8 4.7694 -4.7076 5.2902 12 7 5.9563 -3.5833 3.7869 13 6 5.9703 -2.7375 2.5908 14 6 7.2119 -3.9118 4.4665 15 6 7.7903 -5.1990 3.8753 16 1 7.9794 -5.0573 2.8113 17 8 6.8578 -6.2668 4.0553 18 6 9.1012 -5.5424 4.5855 19 7 9.7155 -6.7059 3.9412 20 6 10.9043 -7.1993 4.4087 21 1 11.3892 -6.7304 5.2521 22 6 11.4860 -8.3021 3.7986 23 7 10.8947 -8.8738 2.7710 24 14 13.1080 -8.9747 4.4358 25 1 12.8437 -10.0011 5.4760 26 1 13.8637 -9.5892 3.3149 27 1 13.9059 -7.8687 5.0233 28 7 3.3850 -3.0146 2.4801 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3434 -0.0709 33 1 1.5896 1.9164 -0.8524 34 1 1.7042 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6610 1.1756 37 1 2.0660 -2.6213 0.0451 38 1 0.5474 -2.3476 0.9323 39 1 0.3564 -3.9851 2.8278 40 1 2.0032 -5.0096 4.6306 41 1 5.7685 -1.7044 2.8740 42 1 6.9485 -2.7990 2.1137 43 1 5.2045 -3.0798 1.8948 44 1 7.9232 -3.0973 4.3293 45 1 7.0228 -4.0536 5.5305 46 1 6.6424 -6.4492 4.9801 47 1 9.7809 -4.6924 4.5246 48 1 8.8985 -5.7712 5.6318 49 1 9.2797 -7.1273 3.1839 50 1 11.3010 -9.6447 2.3449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278757084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = 35.810822 kcal Electronic energy + Delta-G solvation = -29558.830043 eV Core-core repulsion = 25431.598977 eV Total energy + Delta-G solvation = -4127.231066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.87424 -39.59931 -38.27618 -37.11293 -35.15118 -34.00647 -33.86009 -31.32796 -30.94264 -29.92675 -29.00410 -28.22027 -26.76232 -26.06225 -24.84259 -23.20264 -22.18106 -21.78173 -21.28980 -20.94918 -19.37448 -17.71216 -17.07357 -16.89882 -16.65707 -16.30123 -16.08137 -15.79007 -15.37758 -15.21258 -14.91388 -14.56888 -14.34948 -14.23925 -13.76864 -13.62106 -13.49902 -13.16982 -13.04386 -12.86731 -12.79175 -12.59703 -12.55619 -12.33365 -12.30111 -12.17989 -11.98530 -11.68456 -11.37458 -10.87330 -10.76339 -10.72739 -10.52241 -10.09840 -9.99731 -9.69484 -9.51915 -9.40279 -9.24426 -9.07055 -8.82258 -8.35112 -6.83928 -5.67668 -2.96749 1.48589 1.99952 2.07317 3.04207 3.36942 3.48951 3.50669 3.53359 3.55411 3.90954 4.26522 4.39257 4.49242 4.57237 4.64171 4.66169 4.71127 4.82329 4.93243 4.96844 5.02847 5.15546 5.18574 5.24235 5.28651 5.31549 5.34384 5.40166 5.50602 5.57764 5.60858 5.64060 5.78741 5.86435 5.88393 6.12703 6.21127 6.26727 6.30001 6.34880 6.52293 6.61590 6.67966 6.85000 7.43013 7.71663 7.75691 8.28610 8.33132 8.50780 9.61739 10.20733 10.56488 11.54837 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.001939 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.293393 B =14435.707914 C =14943.719398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.124 3.876 6 N -0.288 5.288 7 C -0.019 4.019 8 C -0.176 4.176 9 C -0.005 4.005 10 C 0.607 3.393 11 O -0.531 6.531 12 N -0.596 5.596 13 C 0.076 3.924 14 C 0.085 3.915 15 C 0.086 3.914 16 H 0.095 0.905 17 O -0.548 6.548 18 C 0.126 3.874 19 N -0.725 5.725 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 N -0.258 5.258 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.180 0.820 40 H 0.162 0.838 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.374 0.626 47 H 0.025 0.975 48 H 0.022 0.978 49 H 0.388 0.612 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.987 22.329 -5.290 34.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.004 3.996 6 N -0.076 5.076 7 C -0.162 4.162 8 C -0.204 4.204 9 C -0.165 4.165 10 C 0.393 3.607 11 O -0.406 6.406 12 N -0.328 5.328 13 C -0.067 4.067 14 C -0.038 4.038 15 C 0.025 3.975 16 H 0.113 0.887 17 O -0.353 6.353 18 C -0.003 4.003 19 N -0.370 5.370 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.579 5.579 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 N -0.094 5.094 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.197 0.803 40 H 0.180 0.820 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.221 0.779 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.222 0.778 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -25.111 22.501 -6.565 34.350 hybrid contribution 0.004 -0.560 1.773 1.860 sum -25.107 21.941 -4.792 33.685 Atomic orbital electron populations 1.22534 0.87162 1.02503 1.01090 1.61893 1.08169 1.14634 1.42147 1.22400 1.01261 0.87798 1.00822 1.22350 1.02370 0.91729 0.92129 1.21944 0.99813 0.91073 0.86815 1.45591 1.04863 1.33459 1.23665 1.22839 0.99406 0.98960 0.94964 1.21780 0.91108 1.05022 1.02533 1.21991 0.95796 1.01899 0.96824 1.16844 0.81393 0.78781 0.83634 1.90752 1.86048 1.39981 1.23831 1.47496 1.06038 1.50166 1.29100 1.22096 1.03470 0.93782 0.87356 1.22302 0.84621 0.98570 0.98353 1.22491 0.88783 0.85468 1.00709 0.88673 1.86549 1.63542 1.53588 1.31606 1.21244 0.91877 0.91710 0.95424 1.42257 1.24364 1.32370 1.38003 1.19232 0.97351 1.09236 1.11358 0.91262 1.24762 0.99174 0.98711 0.98421 1.69688 1.39869 1.24255 1.24080 0.86179 0.83466 0.78832 0.77636 1.21739 1.21806 1.20815 1.73676 1.00343 1.21441 1.13911 0.95277 0.90812 0.91120 0.90811 0.90860 0.95371 0.93948 0.88731 0.87848 0.88042 0.80327 0.82014 0.93011 0.91333 0.88781 0.89532 0.89305 0.77887 0.95777 0.96053 0.77752 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.32 60.07 0.56 0.61 16 2 N -0.54 -2.81 5.02 -251.25 -1.26 -4.07 16 3 C 0.03 0.11 9.57 60.07 0.57 0.69 16 4 C 0.04 0.24 5.06 -3.83 -0.02 0.23 16 5 C 0.12 0.67 6.32 -4.04 -0.03 0.65 16 6 N -0.29 -2.50 3.41 -61.33 -0.21 -2.71 16 7 C -0.02 -0.16 11.40 -17.17 -0.20 -0.36 16 8 C -0.18 -2.02 10.81 -39.36 -0.43 -2.45 16 9 C -0.01 -0.07 6.82 -82.77 -0.56 -0.63 16 10 C 0.61 9.61 7.13 -12.40 -0.09 9.52 16 11 O -0.53 -9.70 15.52 1.48 0.02 -9.68 16 12 N -0.60 -8.47 2.83 -182.74 -0.52 -8.98 16 13 C 0.08 0.87 9.63 59.85 0.58 1.45 16 14 C 0.08 1.22 5.14 -4.04 -0.02 1.20 16 15 C 0.09 1.55 3.27 -26.73 -0.09 1.46 16 16 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 17 O -0.55 -11.04 12.17 -39.05 -0.48 -11.51 16 18 C 0.13 2.64 5.90 -4.04 -0.02 2.62 16 19 N -0.73 -19.51 5.55 -59.91 -0.33 -19.84 16 20 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -29.45 13.06 55.49 0.72 -28.73 16 24 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 N -0.26 -2.94 8.19 33.42 0.27 -2.67 16 29 H 0.03 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.07 0.22 8.12 -51.93 -0.42 -0.20 16 31 H 0.07 0.18 6.47 -51.92 -0.34 -0.16 16 32 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 36 H 0.09 0.65 8.01 -51.93 -0.42 0.24 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.30 6.45 -51.93 -0.34 -0.04 16 39 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 43 H 0.09 1.12 5.35 -51.93 -0.28 0.85 16 44 H 0.09 1.04 8.07 -51.93 -0.42 0.63 16 45 H 0.09 1.33 7.37 -51.93 -0.38 0.94 16 46 H 0.37 7.04 8.56 45.56 0.39 7.43 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.39 11.26 7.67 -40.82 -0.31 10.95 16 50 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 410.20 15.07 6.18 6.18 Total: -1.00 -36.84 410.20 -8.15 -44.98 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.54 Total: 11.63 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 0.01 Total: 7.27 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.32 Total: -67.00 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.45 Total: -21.19 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.84 -8.15 -44.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278757084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.795 kcal (2) G-P(sol) polarization free energy of solvation -36.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds