Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99405 * 2 1 4 4 C 1.46891 * 111.00365 * 123.95318 * 2 1 3 5 5 C 1.52999 * 109.47246 * 66.04946 * 4 2 1 6 6 N 1.46500 * 109.47284 * 180.02562 * 5 4 2 7 7 C 1.35031 * 124.89056 * 125.00000 * 6 5 4 8 8 C 1.35362 * 107.23390 * 180.02562 * 7 6 5 9 9 C 1.41505 * 105.50240 * 0.26209 * 8 7 6 10 10 C 1.47702 * 126.52071 * 179.69965 * 9 8 7 11 11 O 1.21573 * 120.00038 * 353.46242 * 10 9 8 12 12 N 1.34774 * 120.00286 * 173.46084 * 10 9 8 13 13 C 1.46503 * 119.99784 * 3.52994 * 12 10 9 14 14 C 1.46502 * 120.00253 * 183.53476 * 12 10 9 15 15 C 1.52999 * 109.47299 * 89.99900 * 14 12 10 16 16 H 1.08994 * 109.47348 * 59.99716 * 15 14 12 17 17 O 1.42902 * 109.46816 * 299.99781 * 15 14 12 18 18 C 1.52996 * 109.46907 * 180.02562 * 15 14 12 19 19 N 1.46507 * 109.47185 * 185.00073 * 18 15 14 20 20 C 1.36936 * 120.00118 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00186 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99944 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00119 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47052 * 90.00022 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99914 * 24 22 20 27 27 H 1.48492 * 109.47048 * 330.00199 * 24 22 20 28 28 N 1.28477 * 124.88248 * 305.01976 * 6 5 4 29 29 H 1.09002 * 109.47090 * 296.04218 * 1 2 3 30 30 H 1.08996 * 109.47392 * 56.04850 * 1 2 3 31 31 H 1.09007 * 109.46726 * 176.04638 * 1 2 3 32 32 H 1.09005 * 109.46731 * 183.95551 * 3 2 1 33 33 H 1.09001 * 109.46987 * 303.95472 * 3 2 1 34 34 H 1.08999 * 109.47293 * 63.95326 * 3 2 1 35 35 H 1.09001 * 109.47016 * 306.05046 * 4 2 1 36 36 H 1.09003 * 109.47440 * 186.04957 * 4 2 1 37 37 H 1.08997 * 109.47673 * 59.99805 * 5 4 2 38 38 H 1.09005 * 109.47188 * 299.99882 * 5 4 2 39 39 H 1.08003 * 126.38369 * 359.97438 * 7 6 5 40 40 H 1.07994 * 127.25167 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.46940 * 84.09723 * 13 12 10 42 42 H 1.09005 * 109.47155 * 204.09356 * 13 12 10 43 43 H 1.09000 * 109.47053 * 324.09258 * 13 12 10 44 44 H 1.09006 * 109.46687 * 209.99873 * 14 12 10 45 45 H 1.08994 * 109.47152 * 329.99496 * 14 12 10 46 46 H 0.96692 * 113.99969 * 299.99912 * 17 15 14 47 47 H 1.09005 * 109.47289 * 304.99733 * 18 15 14 48 48 H 1.09000 * 109.47269 * 64.99847 * 18 15 14 49 49 H 0.97001 * 119.99512 * 359.97438 * 19 18 15 50 50 H 0.97000 * 120.00264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6317 -2.2426 0.9703 6 7 2.1562 -3.0063 2.1050 7 6 1.4179 -3.8026 2.9076 8 6 2.2558 -4.3287 3.8313 9 6 3.5314 -3.7934 3.5333 10 6 4.7883 -4.0593 4.2620 11 8 4.7694 -4.7076 5.2902 12 7 5.9563 -3.5833 3.7869 13 6 5.9703 -2.7375 2.5908 14 6 7.2119 -3.9118 4.4665 15 6 7.7903 -5.1990 3.8753 16 1 7.9794 -5.0573 2.8113 17 8 6.8578 -6.2668 4.0553 18 6 9.1012 -5.5424 4.5855 19 7 9.7155 -6.7059 3.9412 20 6 10.9043 -7.1993 4.4087 21 1 11.3892 -6.7304 5.2521 22 6 11.4860 -8.3021 3.7986 23 7 10.8947 -8.8738 2.7710 24 14 13.1080 -8.9747 4.4358 25 1 12.8437 -10.0011 5.4760 26 1 13.8637 -9.5892 3.3149 27 1 13.9059 -7.8687 5.0233 28 7 3.3850 -3.0146 2.4801 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3434 -0.0709 33 1 1.5896 1.9164 -0.8524 34 1 1.7042 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6610 1.1756 37 1 2.0660 -2.6213 0.0451 38 1 0.5474 -2.3476 0.9323 39 1 0.3564 -3.9851 2.8278 40 1 2.0032 -5.0096 4.6306 41 1 5.7685 -1.7044 2.8740 42 1 6.9485 -2.7990 2.1137 43 1 5.2045 -3.0798 1.8948 44 1 7.9232 -3.0973 4.3293 45 1 7.0228 -4.0536 5.5305 46 1 6.6424 -6.4492 4.9801 47 1 9.7809 -4.6924 4.5246 48 1 8.8985 -5.7712 5.6318 49 1 9.2797 -7.1273 3.1839 50 1 11.3010 -9.6447 2.3449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278757084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = 6.406164 kcal Electronic energy + Delta-G solvation = -29560.105125 eV Core-core repulsion = 25431.598977 eV Total energy + Delta-G solvation = -4128.506148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.64872 -40.78049 -38.74330 -38.54538 -36.43442 -35.86561 -34.60403 -33.22006 -31.89824 -31.01997 -30.04948 -28.50350 -27.95542 -27.29280 -25.86035 -24.67283 -23.31072 -22.55074 -22.46497 -21.81257 -20.36977 -19.23125 -18.48008 -17.93478 -17.71599 -17.26452 -16.90457 -16.54929 -16.47862 -16.38418 -16.08347 -15.92992 -15.43882 -15.10633 -15.00188 -14.76366 -14.52060 -14.34505 -14.14103 -13.96081 -13.82957 -13.68904 -13.38241 -13.36037 -12.99995 -12.97038 -12.76765 -12.65222 -12.62476 -12.54389 -12.16654 -12.09881 -12.04689 -11.82361 -11.55029 -11.26405 -10.99980 -10.94997 -10.20879 -10.05238 -9.54162 -9.43807 -9.01661 -7.94446 -5.24778 0.56492 1.21408 1.43929 1.46359 1.49597 1.57852 1.99925 2.42746 2.56022 2.95561 3.31711 3.36718 3.50089 3.67435 3.76902 3.86024 3.98881 4.00819 4.10601 4.19505 4.24183 4.29650 4.35978 4.46771 4.49468 4.51743 4.60157 4.64105 4.66654 4.75005 4.78503 4.79088 4.80884 4.84189 4.92324 5.01124 5.01987 5.05891 5.23574 5.33001 5.46862 5.56147 5.84503 5.92702 6.00534 6.25964 6.33680 6.79889 6.86916 7.18481 7.32092 8.07981 8.31417 9.29149 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.001939 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.293393 B =14435.707914 C =14943.719398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.553 5.553 3 C 0.024 3.976 4 C 0.050 3.950 5 C 0.122 3.878 6 N -0.280 5.280 7 C 0.005 3.995 8 C -0.206 4.206 9 C -0.040 4.040 10 C 0.597 3.403 11 O -0.569 6.569 12 N -0.597 5.597 13 C 0.077 3.923 14 C 0.095 3.905 15 C 0.096 3.904 16 H 0.088 0.912 17 O -0.567 6.567 18 C 0.125 3.875 19 N -0.741 5.741 20 C -0.248 4.248 21 H 0.079 0.921 22 C -0.080 4.080 23 N -0.971 5.971 24 Si 0.980 3.020 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.266 1.266 28 N -0.261 5.261 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.027 0.973 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.226 0.774 40 H 0.159 0.841 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.377 0.623 47 H 0.043 0.957 48 H 0.024 0.976 49 H 0.373 0.627 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.131 23.982 -5.751 36.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.277 5.277 3 C -0.124 4.124 4 C -0.079 4.079 5 C 0.002 3.998 6 N -0.069 5.069 7 C -0.138 4.138 8 C -0.234 4.234 9 C -0.199 4.199 10 C 0.385 3.615 11 O -0.446 6.446 12 N -0.328 5.328 13 C -0.065 4.065 14 C -0.029 4.029 15 C 0.036 3.964 16 H 0.106 0.894 17 O -0.373 6.373 18 C -0.002 4.002 19 N -0.384 5.384 20 C -0.380 4.380 21 H 0.097 0.903 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.808 3.192 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.190 1.190 28 N -0.099 5.099 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.153 0.847 39 H 0.242 0.758 40 H 0.176 0.824 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.135 0.865 45 H 0.102 0.898 46 H 0.224 0.776 47 H 0.061 0.939 48 H 0.042 0.958 49 H 0.205 0.795 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -26.256 24.224 -7.019 36.407 hybrid contribution 0.236 -0.966 1.852 2.102 sum -26.020 23.258 -5.167 35.280 Atomic orbital electron populations 1.22615 0.85983 1.03552 1.01341 1.61923 1.09296 1.14820 1.41678 1.22425 1.01091 0.87723 1.01171 1.22210 1.01400 0.92065 0.92212 1.22240 1.01661 0.90318 0.85554 1.45963 1.04181 1.32894 1.23829 1.23418 1.00835 0.96692 0.92868 1.21969 0.91174 1.06259 1.03999 1.21850 0.95631 1.04099 0.98281 1.17298 0.82518 0.78227 0.83458 1.90708 1.86787 1.41698 1.25451 1.47599 1.05469 1.50039 1.29659 1.22211 1.03939 0.94072 0.86311 1.22145 0.85394 0.97566 0.97762 1.22415 0.87302 0.86587 1.00109 0.89437 1.86520 1.63981 1.54784 1.32013 1.21432 0.93317 0.90207 0.95259 1.42477 1.24123 1.33881 1.37916 1.19694 0.98008 1.09111 1.11139 0.90310 1.25679 1.03097 0.99441 0.99001 1.69865 1.41715 1.24854 1.25747 0.85053 0.79107 0.78272 0.76781 1.21507 1.22078 1.19030 1.73609 1.01892 1.21105 1.13258 0.95273 0.90299 0.89725 0.91274 0.89968 0.95473 0.94482 0.90354 0.87679 0.84667 0.75785 0.82379 0.91349 0.90278 0.89277 0.86459 0.89804 0.77556 0.93912 0.95806 0.79514 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.32 127.69 1.19 1.25 16 2 N -0.55 -4.66 5.02 -948.83 -4.76 -9.42 16 3 C 0.02 0.18 9.57 127.69 1.22 1.40 16 4 C 0.05 0.48 5.06 86.30 0.44 0.92 16 5 C 0.12 0.98 6.32 86.38 0.55 1.52 16 6 N -0.28 -4.28 3.41 -347.95 -1.19 -5.47 16 7 C 0.00 0.06 11.40 83.54 0.95 1.02 16 8 C -0.21 -4.65 10.81 22.41 0.24 -4.40 16 9 C -0.04 -1.10 6.82 42.45 0.29 -0.81 16 10 C 0.60 19.36 7.13 86.74 0.62 19.98 16 11 O -0.57 -21.62 15.52 -0.29 0.00 -21.63 16 12 N -0.60 -16.83 2.83 -850.33 -2.40 -19.24 16 13 C 0.08 1.69 9.63 127.77 1.23 2.92 16 14 C 0.09 2.68 5.14 86.38 0.44 3.12 16 15 C 0.10 3.46 3.27 30.59 0.10 3.56 16 16 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 17 O -0.57 -23.52 12.17 -145.32 -1.77 -25.29 16 18 C 0.13 5.20 5.90 86.38 0.51 5.71 16 19 N -0.74 -40.28 5.55 -343.44 -1.91 -42.18 16 20 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 21 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 22 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 23 N -0.97 -62.61 13.06 21.65 0.28 -62.33 16 24 Si 0.98 47.78 29.55 68.60 2.03 49.81 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 N -0.26 -5.75 8.19 -48.18 -0.39 -6.15 16 29 H 0.03 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.08 0.29 8.12 -2.39 -0.02 0.27 16 31 H 0.08 0.13 6.47 -2.38 -0.02 0.11 16 32 H 0.07 0.58 8.12 -2.38 -0.02 0.56 16 33 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 34 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.04 0.40 8.12 -2.39 -0.02 0.38 16 36 H 0.08 1.01 8.01 -2.39 -0.02 0.99 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.14 0.20 6.45 -2.38 -0.02 0.19 16 39 H 0.23 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.55 8.03 -2.38 -0.02 1.53 16 43 H 0.09 2.08 5.35 -2.39 -0.01 2.07 16 44 H 0.12 2.58 8.07 -2.38 -0.02 2.56 16 45 H 0.08 2.49 7.37 -2.39 -0.02 2.47 16 46 H 0.38 14.78 8.56 -74.06 -0.63 14.15 16 47 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.37 22.21 7.67 -92.71 -0.71 21.49 16 50 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -81.41 410.20 -1.42 -82.83 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.40 Total: 40.87 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 9.09 Total: 18.18 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -10.37 Total: -144.78 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -1.77 Total: -46.91 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -81.41 -1.42 -82.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278757084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.238 kcal (2) G-P(sol) polarization free energy of solvation -81.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds