Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00013 * 2 1 4 4 C 1.53007 * 109.47006 * 269.99922 * 3 2 1 5 5 C 1.52996 * 109.46839 * 299.99975 * 4 3 2 6 6 C 1.53003 * 109.46850 * 60.00014 * 4 3 2 7 7 C 1.52996 * 109.47210 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47347 * 179.97438 * 7 4 3 9 9 C 1.36934 * 120.00386 * 180.02562 * 8 7 4 10 10 H 1.08001 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.38809 * 120.00196 * 179.97438 * 9 8 7 12 12 N 1.31614 * 120.00265 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99940 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.46971 * 89.99995 * 13 11 9 15 15 H 1.48507 * 109.46880 * 210.00154 * 13 11 9 16 16 H 1.48498 * 109.46847 * 330.00154 * 13 11 9 17 17 C 1.34775 * 120.00019 * 179.97438 * 2 1 3 18 18 O 1.21280 * 119.99959 * 180.02562 * 17 2 1 19 19 C 1.50701 * 120.00198 * 0.02562 * 17 2 1 20 20 O 1.42891 * 109.47115 * 179.97438 * 19 17 2 21 21 C 1.42904 * 114.00067 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47302 * 180.02562 * 21 20 19 23 23 N 1.30517 * 126.34522 * 269.95645 * 22 21 20 24 24 N 1.28600 * 109.67250 * 180.02562 * 23 22 21 25 25 C 1.30526 * 109.67197 * 359.72320 * 24 23 22 26 26 N 1.35494 * 107.30545 * 0.43817 * 25 24 23 27 27 C 1.46499 * 126.97935 * 179.83284 * 26 25 24 28 28 H 1.09004 * 109.47012 * 270.00093 * 1 2 3 29 29 H 1.08993 * 109.46876 * 30.00156 * 1 2 3 30 30 H 1.09003 * 109.47009 * 150.00183 * 1 2 3 31 31 H 1.09001 * 109.46932 * 29.99511 * 3 2 1 32 32 H 1.08995 * 109.47488 * 149.99735 * 3 2 1 33 33 H 1.09001 * 109.47100 * 60.00403 * 5 4 3 34 34 H 1.09008 * 109.46532 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.46948 * 299.99754 * 5 4 3 36 36 H 1.09001 * 109.47700 * 60.00036 * 6 4 3 37 37 H 1.09003 * 109.47073 * 180.02562 * 6 4 3 38 38 H 1.09005 * 109.47211 * 299.99544 * 6 4 3 39 39 H 1.09004 * 109.47137 * 300.00329 * 7 4 3 40 40 H 1.09002 * 109.47128 * 59.99531 * 7 4 3 41 41 H 0.97003 * 120.00007 * 0.02562 * 8 7 4 42 42 H 0.96996 * 120.00581 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.47242 * 59.99715 * 19 17 2 44 44 H 1.09002 * 109.46655 * 299.99883 * 19 17 2 45 45 H 1.08995 * 109.46976 * 60.00094 * 21 20 19 46 46 H 1.09004 * 109.47058 * 300.00278 * 21 20 19 47 47 H 1.07996 * 126.34830 * 180.29376 * 25 24 23 48 48 H 1.09002 * 109.47391 * 269.68706 * 27 26 25 49 49 H 1.09001 * 109.46813 * 149.68762 * 27 26 25 50 50 H 1.09004 * 109.47041 * 29.68889 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8933 -2.1638 7 6 3.2170 3.0357 -1.4426 8 7 3.4617 3.4583 -2.8238 9 6 4.1350 4.6241 -3.0741 10 1 4.4859 5.2319 -2.2533 11 6 4.3673 5.0242 -4.3828 12 7 3.9400 4.2833 -5.3832 13 14 5.2851 6.6150 -4.7242 14 1 6.7411 6.3371 -4.8132 15 1 4.8122 7.1937 -6.0075 16 1 5.0315 7.5788 -3.6233 17 6 2.1390 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0010 19 6 1.3855 -2.4723 0.0005 20 8 2.3141 -3.5584 0.0005 21 6 1.6996 -4.8485 0.0011 22 6 2.7663 -5.9130 0.0017 23 7 3.3133 -6.4605 -1.0493 24 7 4.1851 -7.3307 -0.6798 25 6 4.2380 -7.3737 0.6236 26 7 3.3348 -6.4796 1.0934 27 6 3.0377 -6.1815 2.4966 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 2.7344 -0.2999 -2.1637 34 1 3.4607 0.9585 -3.1916 35 1 4.2318 0.5138 -1.6499 36 1 0.5265 2.6529 -1.6500 37 1 1.2973 2.2075 -3.1916 38 1 0.5707 0.9493 -2.1638 39 1 2.6276 3.7951 -0.9289 40 1 4.1694 2.9058 -0.9286 41 1 3.1468 2.9122 -3.5611 42 1 4.1027 4.5627 -6.2977 43 1 0.7591 -2.5303 -0.8897 44 1 0.7585 -2.5298 0.8903 45 1 1.0792 -4.9558 -0.8886 46 1 1.0797 -4.9553 0.8913 47 1 4.8807 -8.0065 1.2177 48 1 2.2378 -6.8347 2.8454 49 1 2.7238 -5.1417 2.5885 50 1 3.9305 -6.3462 3.0999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282330578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = 28.111079 kcal Electronic energy + Delta-G solvation = -29889.180283 eV Core-core repulsion = 25761.615331 eV Total energy + Delta-G solvation = -4127.564952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.46437 -40.34962 -38.34977 -37.05771 -35.44926 -35.13672 -33.10823 -32.03454 -30.29618 -29.04321 -28.17653 -27.85727 -26.90745 -26.33530 -25.70367 -24.77787 -22.76756 -22.43379 -21.41622 -19.65170 -18.36621 -17.88553 -17.47628 -17.24922 -16.97963 -16.77770 -16.43455 -15.79187 -15.64602 -15.10620 -15.07776 -14.47976 -14.06242 -13.91932 -13.80616 -13.72105 -13.36499 -13.28809 -13.14393 -12.76995 -12.70381 -12.54100 -12.32826 -12.19737 -12.05258 -11.82623 -11.21575 -11.09588 -10.93470 -10.77383 -10.73403 -10.68701 -10.60531 -10.26599 -10.24796 -10.19265 -9.95319 -9.74870 -9.64255 -9.56455 -8.80484 -8.59580 -6.83149 -5.69806 -2.97326 1.24753 2.01836 2.38291 2.54190 2.74526 3.46037 3.48188 3.53040 3.54573 3.98129 4.05862 4.18554 4.35356 4.40648 4.48437 4.61398 4.65491 4.69340 4.74934 4.80996 4.93803 5.09134 5.13546 5.17032 5.32686 5.42468 5.42999 5.46106 5.61363 5.71648 5.73275 5.94217 5.97869 6.12922 6.18123 6.30439 6.36623 6.42087 6.50146 6.57814 6.66005 6.78385 6.82630 6.98865 7.04806 7.28547 7.76220 8.14224 8.37667 8.49671 9.60663 10.20116 10.54810 11.53339 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.002063 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.746141 B =13566.172499 C =14438.708573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.129 3.871 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.728 5.728 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.283 1.283 17 C 0.512 3.488 18 O -0.506 6.506 19 C 0.046 3.954 20 O -0.355 6.355 21 C 0.150 3.850 22 C 0.174 3.826 23 N -0.268 5.268 24 N -0.295 5.295 25 C 0.156 3.844 26 N -0.469 5.469 27 C 0.070 3.930 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.017 0.983 40 H 0.019 0.981 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.222 0.778 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 -22.086 21.010 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C 0.007 3.993 4 C -0.088 4.088 5 C -0.180 4.180 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.367 4.367 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.209 1.209 17 C 0.298 3.702 18 O -0.379 6.379 19 C -0.034 4.034 20 O -0.272 6.272 21 C 0.071 3.929 22 C -0.093 4.093 23 N -0.111 5.111 24 N -0.135 5.135 25 C -0.132 4.132 26 N -0.161 5.161 27 C -0.073 4.073 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.238 0.762 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.428 -22.202 19.623 31.758 hybrid contribution -0.155 0.946 0.963 1.358 sum -11.583 -21.256 20.585 31.776 Atomic orbital electron populations 1.22004 0.79760 1.03956 1.01694 1.47693 1.06779 1.05915 1.73954 1.21577 0.97347 0.83074 0.97287 1.21121 0.96464 0.97035 0.94152 1.21711 0.99272 0.96129 1.00906 1.21891 0.95754 0.99762 1.01917 1.20580 0.95691 0.91132 0.88898 1.42387 1.68121 1.25797 1.00974 1.19233 1.27625 0.98153 0.91716 0.91294 1.24722 1.01822 0.98989 0.95600 1.69653 1.51602 1.38943 0.98117 0.86194 0.79583 0.83245 0.77202 1.21792 1.21859 1.20857 1.19987 0.88221 0.84556 0.77483 1.90784 1.13424 1.86693 1.47039 1.22324 0.92027 0.86352 1.02651 1.88105 1.31630 1.11997 1.95495 1.20487 0.89626 0.79874 1.02891 1.24254 1.01475 1.00424 0.83154 1.74302 1.06391 1.06622 1.23738 1.74325 1.14807 1.15352 1.09018 1.26527 0.96104 0.96878 0.93647 1.46182 1.30188 1.30748 1.08955 1.22179 1.03752 1.03880 0.77488 0.92605 0.89729 0.91397 0.90434 0.89755 0.94405 0.92117 0.92544 0.93225 0.91406 0.93641 0.96511 0.96312 0.77984 0.93584 0.89718 0.90220 0.89042 0.91112 0.76212 0.89748 0.88745 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.15 59.85 0.55 1.01 16 2 N -0.61 -6.72 2.40 -181.57 -0.44 -7.16 16 3 C 0.13 1.74 4.60 -4.04 -0.02 1.72 16 4 C -0.09 -1.44 0.60 -154.51 -0.09 -1.53 16 5 C -0.12 -2.33 6.97 37.16 0.26 -2.07 16 6 C -0.14 -2.10 7.05 37.16 0.26 -1.84 16 7 C 0.17 3.42 5.15 -4.05 -0.02 3.40 16 8 N -0.73 -18.81 5.00 -59.91 -0.30 -19.11 16 9 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 13 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 17 C 0.51 6.57 6.16 -10.99 -0.07 6.51 16 18 O -0.51 -9.03 14.27 -14.35 -0.20 -9.24 16 19 C 0.05 0.40 4.97 36.01 0.18 0.58 16 20 O -0.36 -4.02 9.86 -55.14 -0.54 -4.57 16 21 C 0.15 1.17 6.11 36.00 0.22 1.39 16 22 C 0.17 1.86 7.66 -154.99 -1.19 0.68 16 23 N -0.27 -3.85 12.21 32.80 0.40 -3.45 16 24 N -0.30 -3.94 12.21 29.69 0.36 -3.58 16 25 C 0.16 1.33 12.74 -89.94 -1.15 0.18 16 26 N -0.47 -3.64 3.15 -122.69 -0.39 -4.03 16 27 C 0.07 0.20 10.89 59.85 0.65 0.85 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.60 6.05 -51.93 -0.31 0.29 16 30 H 0.07 0.32 6.44 -51.93 -0.33 -0.01 16 31 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.08 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.04 0.67 6.15 -51.93 -0.32 0.35 16 34 H 0.06 1.30 6.86 -51.92 -0.36 0.94 16 35 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 36 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 38 H 0.04 0.58 5.99 -51.93 -0.31 0.27 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 10.44 5.36 -40.82 -0.22 10.22 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.08 0.56 7.40 -51.93 -0.38 0.18 16 44 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.27 7.85 -51.93 -0.41 -0.14 16 47 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 49 H 0.09 0.27 7.81 -51.93 -0.41 -0.13 16 50 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 399.82 15.07 6.03 6.03 Total: -1.00 -40.85 399.82 -8.00 -48.85 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.96 Total: 3.08 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.66 Total: 3.39 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: 0.37 Total: -65.50 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.75 Total: -13.81 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -40.85 -8.00 -48.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282330578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.964 kcal (2) G-P(sol) polarization free energy of solvation -40.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds