Wall clock time and date at job start Sat Apr 11 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00013 * 2 1 4 4 C 1.53007 * 109.47006 * 269.99922 * 3 2 1 5 5 C 1.52996 * 109.46839 * 299.99975 * 4 3 2 6 6 C 1.53003 * 109.46850 * 60.00014 * 4 3 2 7 7 C 1.52996 * 109.47210 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47347 * 179.97438 * 7 4 3 9 9 C 1.36934 * 120.00386 * 180.02562 * 8 7 4 10 10 H 1.08001 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.38809 * 120.00196 * 179.97438 * 9 8 7 12 12 N 1.31614 * 120.00265 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99940 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.46971 * 89.99995 * 13 11 9 15 15 H 1.48507 * 109.46880 * 210.00154 * 13 11 9 16 16 H 1.48498 * 109.46847 * 330.00154 * 13 11 9 17 17 C 1.34775 * 120.00019 * 179.97438 * 2 1 3 18 18 O 1.21280 * 119.99959 * 180.02562 * 17 2 1 19 19 C 1.50701 * 120.00198 * 0.02562 * 17 2 1 20 20 O 1.42891 * 109.47115 * 179.97438 * 19 17 2 21 21 C 1.42904 * 114.00067 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47302 * 180.02562 * 21 20 19 23 23 N 1.30517 * 126.34522 * 269.95645 * 22 21 20 24 24 N 1.28600 * 109.67250 * 180.02562 * 23 22 21 25 25 C 1.30526 * 109.67197 * 359.72320 * 24 23 22 26 26 N 1.35494 * 107.30545 * 0.43817 * 25 24 23 27 27 C 1.46499 * 126.97935 * 179.83284 * 26 25 24 28 28 H 1.09004 * 109.47012 * 270.00093 * 1 2 3 29 29 H 1.08993 * 109.46876 * 30.00156 * 1 2 3 30 30 H 1.09003 * 109.47009 * 150.00183 * 1 2 3 31 31 H 1.09001 * 109.46932 * 29.99511 * 3 2 1 32 32 H 1.08995 * 109.47488 * 149.99735 * 3 2 1 33 33 H 1.09001 * 109.47100 * 60.00403 * 5 4 3 34 34 H 1.09008 * 109.46532 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.46948 * 299.99754 * 5 4 3 36 36 H 1.09001 * 109.47700 * 60.00036 * 6 4 3 37 37 H 1.09003 * 109.47073 * 180.02562 * 6 4 3 38 38 H 1.09005 * 109.47211 * 299.99544 * 6 4 3 39 39 H 1.09004 * 109.47137 * 300.00329 * 7 4 3 40 40 H 1.09002 * 109.47128 * 59.99531 * 7 4 3 41 41 H 0.97003 * 120.00007 * 0.02562 * 8 7 4 42 42 H 0.96996 * 120.00581 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.47242 * 59.99715 * 19 17 2 44 44 H 1.09002 * 109.46655 * 299.99883 * 19 17 2 45 45 H 1.08995 * 109.46976 * 60.00094 * 21 20 19 46 46 H 1.09004 * 109.47058 * 300.00278 * 21 20 19 47 47 H 1.07996 * 126.34830 * 180.29376 * 25 24 23 48 48 H 1.09002 * 109.47391 * 269.68706 * 27 26 25 49 49 H 1.09001 * 109.46813 * 149.68762 * 27 26 25 50 50 H 1.09004 * 109.47041 * 29.68889 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8933 -2.1638 7 6 3.2170 3.0357 -1.4426 8 7 3.4617 3.4583 -2.8238 9 6 4.1350 4.6241 -3.0741 10 1 4.4859 5.2319 -2.2533 11 6 4.3673 5.0242 -4.3828 12 7 3.9400 4.2833 -5.3832 13 14 5.2851 6.6150 -4.7242 14 1 6.7411 6.3371 -4.8132 15 1 4.8122 7.1937 -6.0075 16 1 5.0315 7.5788 -3.6233 17 6 2.1390 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0010 19 6 1.3855 -2.4723 0.0005 20 8 2.3141 -3.5584 0.0005 21 6 1.6996 -4.8485 0.0011 22 6 2.7663 -5.9130 0.0017 23 7 3.3133 -6.4605 -1.0493 24 7 4.1851 -7.3307 -0.6798 25 6 4.2380 -7.3737 0.6236 26 7 3.3348 -6.4796 1.0934 27 6 3.0377 -6.1815 2.4966 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 2.7344 -0.2999 -2.1637 34 1 3.4607 0.9585 -3.1916 35 1 4.2318 0.5138 -1.6499 36 1 0.5265 2.6529 -1.6500 37 1 1.2973 2.2075 -3.1916 38 1 0.5707 0.9493 -2.1638 39 1 2.6276 3.7951 -0.9289 40 1 4.1694 2.9058 -0.9286 41 1 3.1468 2.9122 -3.5611 42 1 4.1027 4.5627 -6.2977 43 1 0.7591 -2.5303 -0.8897 44 1 0.7585 -2.5298 0.8903 45 1 1.0792 -4.9558 -0.8886 46 1 1.0797 -4.9553 0.8913 47 1 4.8807 -8.0065 1.2177 48 1 2.2378 -6.8347 2.8454 49 1 2.7238 -5.1417 2.5885 50 1 3.9305 -6.3462 3.0999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282330578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:28 Heat of formation + Delta-G solvation = -0.259891 kcal Electronic energy + Delta-G solvation = -29890.410541 eV Core-core repulsion = 25761.615331 eV Total energy + Delta-G solvation = -4128.795210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.14433 -41.32230 -39.23693 -38.27110 -36.40408 -36.01818 -34.89811 -32.75461 -32.22843 -29.93038 -28.80194 -28.54908 -28.02808 -27.37963 -27.16611 -26.00981 -24.25139 -23.41965 -22.04936 -20.65300 -19.82071 -19.13153 -18.54412 -18.08341 -17.72059 -17.56527 -17.18731 -16.71414 -16.63821 -16.34650 -15.90651 -15.82959 -15.41459 -15.27944 -15.04652 -14.39850 -14.28507 -14.27396 -14.12235 -13.87614 -13.68461 -13.63133 -13.20904 -13.20277 -12.97646 -12.92866 -12.78250 -12.59826 -12.53750 -12.43349 -12.23908 -12.09976 -11.66584 -11.63630 -11.49185 -11.44376 -11.13920 -10.94419 -10.83659 -10.73399 -10.43542 -9.55971 -8.97811 -7.94719 -5.22730 0.61994 1.45115 1.48032 1.51411 1.56074 1.63226 1.69551 1.95305 2.55901 2.84441 3.37251 3.38475 3.61264 3.71632 3.84439 3.85244 3.92467 3.96733 3.97151 4.13884 4.22728 4.27016 4.27289 4.40102 4.44924 4.47983 4.56778 4.59315 4.68955 4.69596 4.81914 4.85399 4.86140 4.91431 4.93836 5.02439 5.09231 5.15204 5.17602 5.19550 5.43069 5.48402 5.53859 5.58077 5.85714 5.94059 6.27600 6.46030 7.24936 7.33849 7.64617 8.11466 8.34879 9.29129 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.002063 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.746141 B =13566.172499 C =14438.708573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.604 5.604 3 C 0.138 3.862 4 C -0.077 4.077 5 C -0.107 4.107 6 C -0.126 4.126 7 C 0.162 3.838 8 N -0.740 5.740 9 C -0.243 4.243 10 H 0.075 0.925 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.975 3.025 14 H -0.291 1.291 15 H -0.294 1.294 16 H -0.267 1.267 17 C 0.500 3.500 18 O -0.571 6.571 19 C 0.051 3.949 20 O -0.396 6.396 21 C 0.150 3.850 22 C 0.165 3.835 23 N -0.329 5.329 24 N -0.354 5.354 25 C 0.167 3.833 26 N -0.465 5.465 27 C 0.061 3.939 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.006 0.994 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.098 0.902 46 H 0.118 0.882 47 H 0.265 0.735 48 H 0.112 0.888 49 H 0.096 0.904 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 -22.317 24.220 36.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.337 5.337 3 C 0.014 3.986 4 C -0.078 4.078 5 C -0.164 4.164 6 C -0.184 4.184 7 C 0.035 3.965 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.093 0.907 11 C -0.271 4.271 12 N -0.622 5.622 13 Si 0.804 3.196 14 H -0.219 1.219 15 H -0.220 1.220 16 H -0.191 1.191 17 C 0.288 3.712 18 O -0.449 6.449 19 C -0.028 4.028 20 O -0.314 6.314 21 C 0.072 3.928 22 C -0.104 4.104 23 N -0.171 5.171 24 N -0.194 5.194 25 C -0.121 4.121 26 N -0.156 5.156 27 C -0.079 4.079 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.024 0.976 41 H 0.209 0.791 42 H 0.059 0.941 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.116 0.884 46 H 0.136 0.864 47 H 0.280 0.720 48 H 0.130 0.870 49 H 0.115 0.885 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.208 -22.428 22.899 35.061 hybrid contribution 0.686 0.967 0.095 1.190 sum -13.522 -21.461 22.994 34.237 Atomic orbital electron populations 1.22368 0.76461 1.05295 1.04157 1.47775 1.08638 1.04490 1.72817 1.21321 0.97672 0.85261 0.94331 1.21024 0.96168 0.93962 0.96649 1.21534 0.98749 0.97486 0.98662 1.21811 0.95232 1.01905 0.99414 1.20756 0.95885 0.93665 0.86221 1.42593 1.67838 1.25091 1.02807 1.19659 1.26990 0.98853 0.92011 0.90718 1.25582 1.03402 1.02564 0.95519 1.69823 1.53343 1.40828 0.98203 0.85116 0.77833 0.79520 0.77154 1.21851 1.22030 1.19131 1.20928 0.87832 0.86361 0.76054 1.90763 1.16384 1.87707 1.50079 1.22474 0.91147 0.83215 1.05964 1.88041 1.33860 1.13598 1.95951 1.20773 0.88810 0.77751 1.05443 1.24815 1.01633 1.00622 0.83367 1.74152 1.08174 1.08413 1.26399 1.74170 1.16341 1.16965 1.11878 1.27328 0.95627 0.96387 0.92779 1.46477 1.29153 1.29718 1.10230 1.22580 1.05764 1.04700 0.74866 0.89585 0.89760 0.88757 0.87355 0.92016 0.93293 0.95535 0.95179 0.91280 0.95280 0.90584 0.94926 0.97635 0.79128 0.94078 0.87385 0.85366 0.88424 0.86436 0.71973 0.86971 0.88544 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 9.15 127.77 1.17 1.66 16 2 N -0.60 -11.66 2.40 -846.74 -2.03 -13.69 16 3 C 0.14 3.48 4.60 86.38 0.40 3.88 16 4 C -0.08 -2.55 0.60 -52.18 -0.03 -2.58 16 5 C -0.11 -4.24 6.97 71.98 0.50 -3.74 16 6 C -0.13 -3.73 7.05 71.98 0.51 -3.23 16 7 C 0.16 6.78 5.15 86.38 0.44 7.22 16 8 N -0.74 -39.35 5.00 -343.47 -1.72 -41.07 16 9 C -0.24 -14.15 9.99 84.03 0.84 -13.31 16 10 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 11 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 12 N -0.97 -61.74 13.06 21.65 0.28 -61.46 16 13 Si 0.97 47.84 29.55 68.60 2.03 49.87 16 14 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 C 0.50 12.02 6.16 87.66 0.54 12.56 16 18 O -0.57 -20.86 14.27 16.01 0.23 -20.63 16 19 C 0.05 0.69 4.97 71.24 0.35 1.05 16 20 O -0.40 -8.33 9.86 -129.94 -1.28 -9.61 16 21 C 0.15 2.00 6.11 71.24 0.44 2.43 16 22 C 0.16 3.43 7.66 137.98 1.06 4.49 16 23 N -0.33 -9.87 12.21 -50.16 -0.61 -10.48 16 24 N -0.35 -9.83 12.21 -59.99 -0.73 -10.56 16 25 C 0.17 2.71 12.74 180.11 2.30 5.01 16 26 N -0.47 -6.46 3.15 -542.07 -1.71 -8.16 16 27 C 0.06 0.15 10.89 127.77 1.39 1.54 16 28 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.08 0.78 6.05 -2.39 -0.01 0.77 16 30 H 0.09 0.35 6.44 -2.39 -0.02 0.33 16 31 H 0.11 2.09 8.07 -2.39 -0.02 2.07 16 32 H 0.06 1.87 7.42 -2.39 -0.02 1.85 16 33 H 0.05 1.79 6.15 -2.39 -0.01 1.78 16 34 H 0.03 1.19 6.86 -2.38 -0.02 1.18 16 35 H 0.03 1.31 7.73 -2.39 -0.02 1.29 16 36 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.03 1.08 6.86 -2.39 -0.02 1.07 16 38 H 0.08 1.75 5.99 -2.38 -0.01 1.74 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.38 21.28 5.36 -92.71 -0.50 20.79 16 42 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.11 0.97 7.40 -2.39 -0.02 0.95 16 44 H 0.13 0.49 8.11 -2.39 -0.02 0.47 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.12 0.38 7.85 -2.39 -0.02 0.36 16 47 H 0.26 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 49 H 0.10 0.24 7.81 -2.39 -0.02 0.23 16 50 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 Total: -1.00 -98.02 399.82 5.27 -92.75 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.45 Total: 20.30 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 10.37 Total: 12.74 kcal Atomic # 7 Polarization: -138.90 SS G_CDS: -6.52 Total: -145.42 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.05 Total: -30.24 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -98.02 5.27 -92.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282330578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.491 kcal (2) G-P(sol) polarization free energy of solvation -98.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds