Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00310 * 2 1 4 4 H 1.08998 * 109.46630 * 16.40831 * 3 2 1 5 5 C 1.50697 * 109.47138 * 256.40804 * 3 2 1 6 6 O 1.21280 * 119.99896 * 355.00254 * 5 3 2 7 7 N 1.34774 * 119.99947 * 174.99765 * 5 3 2 8 8 C 1.46498 * 120.00080 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47148 * 179.97438 * 8 7 5 10 10 H 1.09003 * 112.90215 * 43.75318 * 9 8 7 11 11 C 1.53781 * 113.61266 * 174.99736 * 9 8 7 12 12 C 1.53780 * 87.17162 * 89.16367 * 11 9 8 13 13 H 1.09002 * 113.61297 * 270.75601 * 12 11 9 14 14 N 1.46894 * 113.61514 * 139.93668 * 12 11 9 15 15 C 1.46904 * 110.99997 * 154.99797 * 14 12 11 16 16 C 1.50695 * 109.47345 * 179.97438 * 15 14 12 17 17 O 1.21304 * 119.99963 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00310 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00312 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99861 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00121 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00243 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99949 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47148 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47463 * 120.00400 * 23 21 19 26 26 H 1.48504 * 109.46903 * 240.00221 * 23 21 19 27 27 C 1.53785 * 87.08302 * 25.38789 * 12 11 9 28 28 C 1.53001 * 109.47022 * 136.40921 * 3 2 1 29 29 C 1.52994 * 117.49829 * 2.73350 * 28 3 2 30 30 C 1.53005 * 117.49904 * 294.07315 * 28 3 2 31 31 H 1.08999 * 109.47364 * 178.57991 * 1 2 3 32 32 H 1.09001 * 109.47431 * 298.58245 * 1 2 3 33 33 H 1.08999 * 109.46997 * 58.57774 * 1 2 3 34 34 H 0.97003 * 120.00040 * 359.97438 * 7 5 3 35 35 H 1.08997 * 109.47057 * 60.00606 * 8 7 5 36 36 H 1.08999 * 109.47356 * 299.99969 * 8 7 5 37 37 H 1.09003 * 113.61939 * 334.57064 * 11 9 8 38 38 H 1.09002 * 113.61324 * 203.74975 * 11 9 8 39 39 H 1.00905 * 111.00367 * 278.95404 * 14 12 11 40 40 H 1.08997 * 109.47347 * 300.00100 * 15 14 12 41 41 H 1.09004 * 109.46617 * 60.00280 * 15 14 12 42 42 H 0.97000 * 120.00009 * 0.02562 * 18 16 15 43 43 H 0.96998 * 120.00113 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.61087 * 89.11187 * 27 12 11 45 45 H 1.08995 * 113.61423 * 219.93823 * 27 12 11 46 46 H 1.09000 * 115.54955 * 148.40852 * 28 3 2 47 47 H 1.09002 * 117.50289 * 359.97438 * 29 28 3 48 48 H 1.09001 * 117.49720 * 145.02220 * 29 28 3 49 49 H 1.09000 * 117.49580 * 214.98168 * 30 28 3 50 50 H 1.08997 * 117.49673 * 0.02562 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2575 2.0383 0.2903 5 6 2.5196 1.6285 -1.3810 6 8 2.4794 0.7878 -2.2542 7 7 3.0197 2.8517 -1.6457 8 6 3.5144 3.1660 -2.9884 9 6 4.0229 4.6087 -3.0198 10 1 4.6226 4.8662 -2.1468 11 6 4.6775 5.0022 -4.3546 12 6 3.2782 5.4310 -4.8269 13 1 2.7125 4.6289 -5.3008 14 7 3.2773 6.6716 -5.6136 15 6 2.1126 6.7274 -6.5071 16 6 2.1454 8.0113 -7.2955 17 8 3.0503 8.8019 -7.1297 18 7 1.1693 8.2812 -8.1848 19 6 1.1988 9.4495 -8.9016 20 1 2.0045 10.1534 -8.7540 21 6 0.1928 9.7274 -9.8189 22 7 -0.7873 8.8707 -9.9989 23 14 0.2334 11.3189 -10.7961 24 1 1.4320 12.1062 -10.4103 25 1 0.2909 11.0076 -12.2469 26 1 -0.9908 12.1084 -10.5074 27 6 2.9283 5.6415 -3.3442 28 6 3.1722 1.3463 0.9946 29 6 3.5284 0.0464 1.7185 30 6 2.8379 1.1816 2.4786 31 1 -0.3634 -1.0273 -0.0255 32 1 -0.3634 0.4917 0.9024 33 1 -0.3633 0.5358 -0.8770 34 1 3.0515 3.5243 -0.9474 35 1 2.7055 3.0505 -3.7098 36 1 4.3286 2.4878 -3.2436 37 1 5.0846 4.1557 -4.9076 38 1 5.3818 5.8296 -4.2683 39 1 3.3109 7.4812 -5.0122 40 1 2.1387 5.8796 -7.1916 41 1 1.1982 6.6884 -5.9150 42 1 0.4454 7.6491 -8.3171 43 1 -1.4898 9.0650 -10.6389 44 1 3.1541 6.6439 -2.9804 45 1 1.9229 5.3124 -3.0820 46 1 3.9902 2.0181 0.7346 47 1 2.9348 -0.8379 1.4865 48 1 4.5809 -0.1369 1.9350 49 1 3.4364 1.7447 3.1948 50 1 1.7903 1.0437 2.7462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316630458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -69.969292 kcal Electronic energy + Delta-G solvation = -28589.064065 eV Core-core repulsion = 24424.953278 eV Total energy + Delta-G solvation = -4164.110787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64313 -39.64737 -38.29775 -37.96982 -36.55356 -35.02432 -34.03581 -33.19017 -31.20409 -29.93693 -27.81631 -26.67099 -25.83742 -25.68629 -24.06102 -22.80829 -22.48513 -21.90428 -20.59832 -19.59469 -19.00767 -17.90811 -17.76715 -17.26196 -16.66171 -16.41014 -15.84270 -15.75063 -15.37486 -15.11841 -15.00647 -14.61454 -14.51619 -14.31258 -14.00116 -13.80335 -13.59282 -13.26801 -13.20743 -12.71996 -12.55724 -12.32468 -12.06188 -12.04697 -11.84330 -11.76527 -11.58754 -11.54304 -11.20423 -11.07242 -11.03950 -10.83507 -10.63802 -10.55966 -10.41364 -10.34201 -10.21645 -9.60354 -9.52016 -9.37007 -8.44254 -8.01394 -7.94683 -6.41717 -3.82582 2.24015 2.59163 3.16323 3.23117 3.26854 3.34188 3.45668 3.91104 4.08337 4.10592 4.24252 4.31056 4.35120 4.37297 4.43351 4.54593 4.65241 4.67440 4.81716 4.85160 4.93597 5.02053 5.07098 5.18220 5.20458 5.27120 5.27384 5.29544 5.41668 5.43382 5.57868 5.60118 5.66864 5.75802 5.80592 5.80667 5.88209 5.98009 6.02971 6.13146 6.18532 6.31124 6.51712 7.14729 7.27814 7.55414 7.68129 7.89848 8.06779 8.61350 9.18015 9.54593 10.05953 10.76097 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.001586 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.904964 B =17651.871413 C =18369.234577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.104 3.896 4 H 0.092 0.908 5 C 0.497 3.503 6 O -0.521 6.521 7 N -0.726 5.726 8 C 0.137 3.863 9 C -0.126 4.126 10 H 0.084 0.916 11 C -0.116 4.116 12 C 0.067 3.933 13 H 0.095 0.905 14 N -0.657 5.657 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.165 4.165 28 C -0.168 4.168 29 C -0.157 4.157 30 C -0.171 4.171 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.400 0.600 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.351 0.649 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.118 0.882 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -16.669 25.611 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.042 3.958 4 H 0.109 0.891 5 C 0.281 3.719 6 O -0.395 6.395 7 N -0.381 5.381 8 C 0.014 3.986 9 C -0.145 4.145 10 H 0.102 0.898 11 C -0.155 4.155 12 C -0.045 4.045 13 H 0.113 0.887 14 N -0.288 5.288 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.205 4.205 28 C -0.187 4.187 29 C -0.194 4.194 30 C -0.208 4.208 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.235 0.765 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.171 0.829 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.127 0.873 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.914 -17.156 24.426 30.251 hybrid contribution -1.492 1.167 0.246 1.910 sum 3.422 -15.988 24.672 29.598 Atomic orbital electron populations 1.22932 0.80444 1.03510 1.00061 1.88008 1.19994 1.24776 1.94300 1.21415 0.95689 0.87265 0.91422 0.89081 1.21061 0.78158 0.82052 0.90582 1.90736 1.54234 1.47023 1.47516 1.46023 1.64154 1.14145 1.13745 1.21208 0.99272 0.94645 0.83489 1.22468 0.98823 0.93383 0.99854 0.89785 1.23059 0.97314 1.01353 0.93744 1.23100 0.96974 0.93722 0.90654 0.88674 1.60014 1.41818 1.03660 1.23325 1.21717 0.91863 0.98580 0.96133 1.19846 0.84683 0.88519 0.84372 1.90522 1.36705 1.50179 1.69439 1.41880 1.22805 1.20183 1.35213 1.19763 1.09301 0.96898 1.16920 0.87858 1.25268 0.95418 0.99334 0.97969 1.69620 1.12345 1.36059 1.36292 0.85796 0.78291 0.81165 0.79061 1.19213 1.20730 1.20795 1.23826 0.98565 0.99412 0.98674 1.22380 0.99596 1.03866 0.92827 1.22914 1.01449 0.93133 1.01877 1.23000 1.01943 1.03071 0.92753 0.88990 0.93805 0.93637 0.76544 0.91080 0.90991 0.91063 0.88952 0.82862 0.89628 0.93909 0.77465 0.91927 0.89504 0.91518 0.86409 0.87289 0.88713 0.88330 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.74 101.05 1.09 1.26 16 2 O -0.35 -3.29 8.24 -55.09 -0.45 -3.74 16 3 C 0.10 0.79 2.95 -27.88 -0.08 0.70 16 4 H 0.09 0.49 7.67 -51.93 -0.40 0.09 16 5 C 0.50 5.06 7.14 -10.99 -0.08 4.98 16 6 O -0.52 -7.77 16.51 -14.30 -0.24 -8.00 16 7 N -0.73 -5.53 5.43 -60.30 -0.33 -5.86 16 8 C 0.14 1.20 5.36 -4.04 -0.02 1.18 16 9 C -0.13 -0.99 3.95 -89.71 -0.35 -1.34 16 10 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 11 C -0.12 -1.15 7.46 -25.92 -0.19 -1.35 16 12 C 0.07 0.78 3.84 -66.90 -0.26 0.52 16 13 H 0.10 1.11 7.45 -51.93 -0.39 0.72 16 14 N -0.66 -10.41 6.24 -107.13 -0.67 -11.07 16 15 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 16 C 0.44 10.46 7.82 -10.99 -0.09 10.38 16 17 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 18 N -0.56 -14.42 5.29 -10.96 -0.06 -14.47 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.17 -1.52 7.23 -25.83 -0.19 -1.71 16 28 C -0.17 -1.02 5.70 -90.62 -0.52 -1.54 16 29 C -0.16 -1.00 9.87 -26.70 -0.26 -1.26 16 30 C -0.17 -0.82 10.25 -26.69 -0.27 -1.10 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.40 1.95 8.47 -40.82 -0.35 1.60 16 35 H 0.07 0.73 7.40 -51.93 -0.38 0.34 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.35 5.68 7.89 -39.29 -0.31 5.37 16 40 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.09 0.80 7.82 -51.93 -0.41 0.40 16 45 H 0.07 0.61 8.10 -51.93 -0.42 0.18 16 46 H 0.12 0.61 7.98 -51.93 -0.41 0.19 16 47 H 0.11 0.83 7.02 -51.93 -0.36 0.46 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 415.75 15.07 6.27 6.27 Total: -1.00 -34.81 415.75 -9.53 -44.34 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -8.34 Total: 12.76 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.50 Total: 3.50 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.33 Total: -55.36 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.60 Total: -27.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.81 -9.53 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316630458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.631 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds