Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00310 * 2 1 4 4 H 1.08998 * 109.46630 * 16.40831 * 3 2 1 5 5 C 1.50697 * 109.47138 * 256.40804 * 3 2 1 6 6 O 1.21280 * 119.99896 * 355.00254 * 5 3 2 7 7 N 1.34774 * 119.99947 * 174.99765 * 5 3 2 8 8 C 1.46498 * 120.00080 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47148 * 179.97438 * 8 7 5 10 10 H 1.09003 * 112.90215 * 43.75318 * 9 8 7 11 11 C 1.53781 * 113.61266 * 174.99736 * 9 8 7 12 12 C 1.53780 * 87.17162 * 89.16367 * 11 9 8 13 13 H 1.09002 * 113.61297 * 270.75601 * 12 11 9 14 14 N 1.46894 * 113.61514 * 139.93668 * 12 11 9 15 15 C 1.46904 * 110.99997 * 154.99797 * 14 12 11 16 16 C 1.50695 * 109.47345 * 179.97438 * 15 14 12 17 17 O 1.21304 * 119.99963 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00310 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00312 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99861 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00121 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00243 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99949 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47148 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47463 * 120.00400 * 23 21 19 26 26 H 1.48504 * 109.46903 * 240.00221 * 23 21 19 27 27 C 1.53785 * 87.08302 * 25.38789 * 12 11 9 28 28 C 1.53001 * 109.47022 * 136.40921 * 3 2 1 29 29 C 1.52994 * 117.49829 * 2.73350 * 28 3 2 30 30 C 1.53005 * 117.49904 * 294.07315 * 28 3 2 31 31 H 1.08999 * 109.47364 * 178.57991 * 1 2 3 32 32 H 1.09001 * 109.47431 * 298.58245 * 1 2 3 33 33 H 1.08999 * 109.46997 * 58.57774 * 1 2 3 34 34 H 0.97003 * 120.00040 * 359.97438 * 7 5 3 35 35 H 1.08997 * 109.47057 * 60.00606 * 8 7 5 36 36 H 1.08999 * 109.47356 * 299.99969 * 8 7 5 37 37 H 1.09003 * 113.61939 * 334.57064 * 11 9 8 38 38 H 1.09002 * 113.61324 * 203.74975 * 11 9 8 39 39 H 1.00905 * 111.00367 * 278.95404 * 14 12 11 40 40 H 1.08997 * 109.47347 * 300.00100 * 15 14 12 41 41 H 1.09004 * 109.46617 * 60.00280 * 15 14 12 42 42 H 0.97000 * 120.00009 * 0.02562 * 18 16 15 43 43 H 0.96998 * 120.00113 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.61087 * 89.11187 * 27 12 11 45 45 H 1.08995 * 113.61423 * 219.93823 * 27 12 11 46 46 H 1.09000 * 115.54955 * 148.40852 * 28 3 2 47 47 H 1.09002 * 117.50289 * 359.97438 * 29 28 3 48 48 H 1.09001 * 117.49720 * 145.02220 * 29 28 3 49 49 H 1.09000 * 117.49580 * 214.98168 * 30 28 3 50 50 H 1.08997 * 117.49673 * 0.02562 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2575 2.0383 0.2903 5 6 2.5196 1.6285 -1.3810 6 8 2.4794 0.7878 -2.2542 7 7 3.0197 2.8517 -1.6457 8 6 3.5144 3.1660 -2.9884 9 6 4.0229 4.6087 -3.0198 10 1 4.6226 4.8662 -2.1468 11 6 4.6775 5.0022 -4.3546 12 6 3.2782 5.4310 -4.8269 13 1 2.7125 4.6289 -5.3008 14 7 3.2773 6.6716 -5.6136 15 6 2.1126 6.7274 -6.5071 16 6 2.1454 8.0113 -7.2955 17 8 3.0503 8.8019 -7.1297 18 7 1.1693 8.2812 -8.1848 19 6 1.1988 9.4495 -8.9016 20 1 2.0045 10.1534 -8.7540 21 6 0.1928 9.7274 -9.8189 22 7 -0.7873 8.8707 -9.9989 23 14 0.2334 11.3189 -10.7961 24 1 1.4320 12.1062 -10.4103 25 1 0.2909 11.0076 -12.2469 26 1 -0.9908 12.1084 -10.5074 27 6 2.9283 5.6415 -3.3442 28 6 3.1722 1.3463 0.9946 29 6 3.5284 0.0464 1.7185 30 6 2.8379 1.1816 2.4786 31 1 -0.3634 -1.0273 -0.0255 32 1 -0.3634 0.4917 0.9024 33 1 -0.3633 0.5358 -0.8770 34 1 3.0515 3.5243 -0.9474 35 1 2.7055 3.0505 -3.7098 36 1 4.3286 2.4878 -3.2436 37 1 5.0846 4.1557 -4.9076 38 1 5.3818 5.8296 -4.2683 39 1 3.3109 7.4812 -5.0122 40 1 2.1387 5.8796 -7.1916 41 1 1.1982 6.6884 -5.9150 42 1 0.4454 7.6491 -8.3171 43 1 -1.4898 9.0650 -10.6389 44 1 3.1541 6.6439 -2.9804 45 1 1.9229 5.3124 -3.0820 46 1 3.9902 2.0181 0.7346 47 1 2.9348 -0.8379 1.4865 48 1 4.5809 -0.1369 1.9350 49 1 3.4364 1.7447 3.1948 50 1 1.7903 1.0437 2.7462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316630458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -95.711118 kcal Electronic energy + Delta-G solvation = -28590.180315 eV Core-core repulsion = 24424.953278 eV Total energy + Delta-G solvation = -4165.227037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37352 -40.56769 -39.87155 -38.86030 -37.05551 -36.20744 -35.74725 -34.43061 -33.25012 -30.61678 -28.86181 -27.69613 -26.74771 -26.54753 -25.65548 -23.44146 -23.20559 -22.49742 -21.25591 -21.18288 -20.14438 -19.82326 -18.48983 -18.00290 -17.73637 -17.21158 -16.90714 -16.81669 -16.45668 -16.32962 -16.00739 -15.78068 -15.62703 -15.46967 -15.27646 -14.66959 -14.46817 -14.41489 -14.19122 -13.95993 -13.61132 -13.52937 -13.24799 -13.07090 -12.87458 -12.70448 -12.52774 -12.47097 -12.42109 -12.28610 -12.13584 -12.04747 -11.71588 -11.52796 -11.36892 -11.32758 -11.21809 -11.08999 -10.34769 -10.28431 -10.12357 -10.02960 -9.22219 -8.47914 -5.97014 1.36147 1.41474 1.50009 1.55951 1.94851 2.03500 2.28631 2.71491 2.95854 2.99441 3.19224 3.48175 3.54787 3.56133 3.70435 3.74988 3.86891 3.90008 4.03384 4.16197 4.20572 4.28830 4.31890 4.37039 4.44477 4.49166 4.50372 4.53187 4.60714 4.69076 4.80684 4.81839 4.85976 4.90633 5.01262 5.03204 5.12822 5.20916 5.21721 5.33833 5.35553 5.40198 5.45502 5.92738 5.98274 6.16607 6.45769 6.53063 6.58634 7.11195 7.20229 7.54643 8.09662 8.69704 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.001586 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.904964 B =17651.871413 C =18369.234577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.379 6.379 3 C 0.105 3.895 4 H 0.118 0.882 5 C 0.493 3.507 6 O -0.577 6.577 7 N -0.709 5.709 8 C 0.139 3.861 9 C -0.102 4.102 10 H 0.109 0.891 11 C -0.116 4.116 12 C 0.054 3.946 13 H 0.095 0.905 14 N -0.672 5.672 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.155 4.155 28 C -0.172 4.172 29 C -0.175 4.175 30 C -0.151 4.151 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.417 0.583 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.347 0.653 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.129 0.871 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.115 0.885 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -16.256 27.452 32.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.297 6.297 3 C 0.044 3.956 4 H 0.135 0.865 5 C 0.279 3.721 6 O -0.456 6.456 7 N -0.364 5.364 8 C 0.016 3.984 9 C -0.121 4.121 10 H 0.127 0.873 11 C -0.155 4.155 12 C -0.056 4.056 13 H 0.113 0.887 14 N -0.303 5.303 15 C -0.068 4.068 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.194 4.194 28 C -0.191 4.191 29 C -0.212 4.212 30 C -0.187 4.187 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.167 0.833 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.147 0.853 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.133 0.867 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.645 -16.743 26.307 31.528 hybrid contribution -1.390 0.992 -0.314 1.736 sum 3.256 -15.751 25.994 30.567 Atomic orbital electron populations 1.23071 0.79380 1.04148 1.00781 1.87987 1.21363 1.26017 1.94290 1.21554 0.96767 0.87319 0.90000 0.86488 1.21656 0.77377 0.81888 0.91150 1.90710 1.56722 1.48789 1.49344 1.45879 1.62835 1.13894 1.13765 1.21099 0.98512 0.95062 0.83763 1.22268 0.97982 0.92179 0.99668 0.87289 1.23045 0.96319 1.01209 0.94902 1.23313 0.98638 0.91930 0.91737 0.88694 1.60042 1.41050 1.05098 1.24108 1.21562 0.93795 0.95119 0.96281 1.20911 0.83182 0.89876 0.83564 1.90487 1.37975 1.52085 1.70427 1.41957 1.23547 1.19813 1.35769 1.19728 1.09720 0.98022 1.18963 0.90252 1.26066 0.94605 1.02427 0.98232 1.69680 1.12589 1.37337 1.36582 0.84847 0.78321 0.77221 0.77790 1.19728 1.19664 1.19503 1.23735 0.99295 1.00047 0.96300 1.22434 0.99482 1.03830 0.93352 1.22921 1.01793 0.93053 1.03416 1.23070 1.02282 1.01397 0.91982 0.88514 0.91378 0.94559 0.74531 0.92636 0.91817 0.91089 0.89271 0.83312 0.88348 0.91707 0.77027 0.91291 0.89041 0.90994 0.85284 0.89050 0.88168 0.86653 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.74 113.37 1.22 1.49 16 2 O -0.38 -6.87 8.24 -129.99 -1.07 -7.94 16 3 C 0.10 1.43 2.95 29.85 0.09 1.52 16 4 H 0.12 0.94 7.67 -2.39 -0.02 0.92 16 5 C 0.49 9.63 7.14 87.66 0.63 10.25 16 6 O -0.58 -17.55 16.51 15.96 0.26 -17.29 16 7 N -0.71 -9.45 5.43 -463.07 -2.52 -11.96 16 8 C 0.14 2.24 5.36 86.38 0.46 2.70 16 9 C -0.10 -1.34 3.95 -10.21 -0.04 -1.38 16 10 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 11 C -0.12 -2.13 7.46 31.12 0.23 -1.90 16 12 C 0.05 1.19 3.84 45.44 0.17 1.36 16 13 H 0.10 2.11 7.45 -2.39 -0.02 2.09 16 14 N -0.67 -20.77 6.24 -492.86 -3.08 -23.85 16 15 C 0.06 2.25 6.01 85.55 0.51 2.76 16 16 C 0.44 21.04 7.82 87.66 0.69 21.72 16 17 O -0.62 -34.80 15.78 -3.10 -0.05 -34.85 16 18 N -0.57 -29.82 5.29 -306.98 -1.62 -31.45 16 19 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 23 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 C -0.15 -2.48 7.23 31.18 0.23 -2.26 16 28 C -0.17 -1.75 5.70 -10.79 -0.06 -1.81 16 29 C -0.17 -2.04 9.87 30.62 0.30 -1.74 16 30 C -0.15 -1.06 10.25 30.62 0.31 -0.75 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.42 2.74 8.47 -92.71 -0.79 1.95 16 35 H 0.06 1.10 7.40 -2.39 -0.02 1.08 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.35 11.04 7.89 -89.69 -0.71 10.34 16 40 H 0.10 3.18 8.13 -2.39 -0.02 3.16 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 42 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 43 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.09 1.45 7.82 -2.38 -0.02 1.43 16 45 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 46 H 0.13 0.98 7.98 -2.39 -0.02 0.96 16 47 H 0.09 1.40 7.02 -2.39 -0.02 1.38 16 48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.45 415.75 -1.00 -78.44 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -1.26 Total: 40.23 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.02 Total: 13.30 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -6.93 Total: -117.05 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.86 Total: -60.08 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -77.45 -1.00 -78.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316630458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.267 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds