Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00111 * 2 1 4 4 H 1.08998 * 109.47270 * 30.00848 * 3 2 1 5 5 C 1.50698 * 109.47227 * 270.00495 * 3 2 1 6 6 O 1.21285 * 120.00148 * 354.99659 * 5 3 2 7 7 N 1.34784 * 119.99866 * 175.00469 * 5 3 2 8 8 C 1.46496 * 119.99758 * 179.97438 * 7 5 3 9 9 H 1.09001 * 112.85032 * 336.19438 * 8 7 5 10 10 C 1.53782 * 113.68971 * 107.45966 * 8 7 5 11 11 C 1.53962 * 87.11063 * 89.19569 * 10 8 7 12 12 H 1.08993 * 113.61598 * 270.84305 * 11 10 8 13 13 N 1.46900 * 113.66526 * 139.88647 * 11 10 8 14 14 C 1.46904 * 110.99843 * 107.55311 * 13 11 10 15 15 C 1.50700 * 109.47146 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00195 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99567 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99868 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99432 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00163 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99799 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00017 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46970 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47346 * 119.99773 * 22 20 18 25 25 H 1.48490 * 109.47214 * 240.00158 * 22 20 18 26 26 C 1.53781 * 113.61266 * 204.99541 * 8 7 5 27 27 C 1.53004 * 109.47063 * 150.00371 * 3 2 1 28 28 C 1.53787 * 113.61327 * 39.13559 * 27 3 2 29 29 C 1.53950 * 87.02132 * 220.04940 * 28 27 3 30 30 C 1.53776 * 113.61346 * 301.53251 * 27 3 2 31 31 H 1.09006 * 109.46853 * 299.99629 * 1 2 3 32 32 H 1.09002 * 109.47324 * 59.99286 * 1 2 3 33 33 H 1.08999 * 109.47437 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99554 * 359.97438 * 7 5 3 35 35 H 1.08997 * 113.61668 * 203.67120 * 10 8 7 36 36 H 1.08994 * 113.61387 * 334.57855 * 10 8 7 37 37 H 1.00904 * 111.00182 * 343.59801 * 13 11 10 38 38 H 1.09003 * 109.47079 * 300.00250 * 14 13 11 39 39 H 1.09005 * 109.46865 * 59.99631 * 14 13 11 40 40 H 0.97000 * 120.00490 * 0.02562 * 17 15 14 41 41 H 0.97004 * 119.99539 * 180.02562 * 21 20 18 42 42 H 1.09002 * 113.61445 * 25.35018 * 26 8 7 43 43 H 1.09002 * 113.61408 * 156.16749 * 26 8 7 44 44 H 1.08993 * 112.84985 * 170.33180 * 27 3 2 45 45 H 1.09002 * 113.61688 * 334.57459 * 28 27 3 46 46 H 1.09001 * 113.60825 * 105.47115 * 28 27 3 47 47 H 1.09004 * 113.53685 * 270.81606 * 29 28 27 48 48 H 1.08993 * 113.66623 * 139.93370 * 29 28 27 49 49 H 1.09003 * 113.61870 * 254.52683 * 30 27 3 50 50 H 1.09003 * 113.61837 * 25.42842 * 30 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9790 1.0107 -2.3414 7 7 2.6589 3.0125 -1.6685 8 6 2.8579 3.4585 -3.0497 9 1 3.0201 2.6324 -3.7420 10 6 1.8022 4.4676 -3.5313 11 6 2.7244 5.5739 -2.9872 12 1 2.5387 5.8224 -1.9424 13 7 2.7980 6.7587 -3.8525 14 6 2.0746 7.8906 -3.2579 15 6 2.1726 9.0851 -4.1714 16 8 2.7844 9.0017 -5.2154 17 7 1.5795 10.2458 -3.8289 18 6 1.6690 11.3327 -4.6597 19 1 2.2146 11.2586 -5.5889 20 6 1.0580 12.5296 -4.3063 21 7 0.3938 12.6195 -3.1760 22 14 1.1794 14.0103 -5.4387 23 1 1.9747 13.6506 -6.6403 24 1 -0.1834 14.4285 -5.8547 25 1 1.8431 15.1285 -4.7218 26 6 3.8894 4.5905 -3.1888 27 6 3.3590 1.2632 0.7212 28 6 4.1773 -0.0044 0.4234 29 6 4.5679 -0.0049 1.9125 30 6 3.2652 0.7692 2.1744 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.8469 3.6154 -0.9322 35 1 1.6845 4.4928 -4.6147 36 1 0.8519 4.3910 -3.0030 37 1 2.4507 6.5533 -4.7773 38 1 1.0271 7.6214 -3.1222 39 1 2.5148 8.1357 -2.2913 40 1 1.0898 10.3125 -2.9942 41 1 -0.0331 13.4550 -2.9295 42 1 4.6242 4.6132 -2.3840 43 1 4.3434 4.6484 -4.1781 44 1 3.9277 2.1863 0.6096 45 1 3.5673 -0.8594 0.1317 46 1 5.0176 0.1665 -0.2493 47 1 5.4684 0.5708 2.1265 48 1 4.5831 -0.9984 2.3605 49 1 3.3704 1.5636 2.9134 50 1 2.4054 0.1261 2.3624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317083605.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -74.673438 kcal Electronic energy + Delta-G solvation = -29149.372335 eV Core-core repulsion = 24985.057561 eV Total energy + Delta-G solvation = -4164.314774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90519 -39.65618 -38.42536 -37.94643 -37.09657 -34.60013 -33.85413 -32.57929 -31.21560 -29.95426 -26.99033 -26.58358 -25.94751 -25.81244 -24.69986 -24.02460 -22.76869 -21.08340 -19.90749 -19.64668 -19.13770 -17.95193 -17.84789 -17.06860 -16.66040 -16.26721 -15.91989 -15.59983 -15.38989 -14.97981 -14.86322 -14.67773 -14.49602 -14.14528 -13.99928 -13.76122 -13.53932 -13.10716 -12.82260 -12.78253 -12.63783 -12.54674 -12.27809 -12.19320 -11.91553 -11.76658 -11.61446 -11.44519 -11.09775 -11.01486 -10.94974 -10.85132 -10.74042 -10.58548 -10.48614 -10.35652 -10.23688 -9.54018 -9.53433 -9.28334 -8.47258 -8.04723 -7.97241 -6.43867 -3.84595 2.29129 2.69873 3.14963 3.25683 3.33049 3.35323 3.88622 4.03814 4.08114 4.24939 4.26172 4.28740 4.40170 4.45979 4.48532 4.58145 4.73864 4.78707 4.82629 4.92255 4.99475 5.09914 5.14569 5.22407 5.24902 5.33928 5.39504 5.44594 5.50126 5.55274 5.62849 5.67478 5.68785 5.74005 5.76726 5.81736 5.83778 5.95085 5.99125 6.14896 6.23148 6.36645 6.59887 7.20151 7.23500 7.53618 7.63103 7.94555 8.04667 8.59083 9.16058 9.52220 10.03554 10.73939 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021470 B = 0.001705 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.859421 B =16419.867846 C =16553.091891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.083 3.917 4 H 0.088 0.912 5 C 0.494 3.506 6 O -0.523 6.523 7 N -0.710 5.710 8 C 0.119 3.881 9 H 0.103 0.897 10 C -0.180 4.180 11 C 0.068 3.932 12 H 0.093 0.907 13 N -0.656 5.656 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.132 4.132 27 C -0.111 4.111 28 C -0.128 4.128 29 C -0.142 4.142 30 C -0.129 4.129 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.353 0.647 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -24.407 13.697 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.021 3.979 4 H 0.105 0.895 5 C 0.280 3.720 6 O -0.398 6.398 7 N -0.363 5.363 8 C 0.013 3.987 9 H 0.121 0.879 10 C -0.221 4.221 11 C -0.043 4.043 12 H 0.111 0.889 13 N -0.288 5.288 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.171 4.171 27 C -0.130 4.130 28 C -0.165 4.165 29 C -0.180 4.180 30 C -0.167 4.167 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.234 0.766 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.173 0.827 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.235 -24.819 12.626 28.033 hybrid contribution -1.475 1.274 0.227 1.962 sum 1.760 -23.545 12.854 26.883 Atomic orbital electron populations 1.22881 0.80567 1.03300 1.00097 1.87962 1.19958 1.24690 1.94323 1.21874 0.97074 0.86921 0.92019 0.89479 1.21366 0.76889 0.81582 0.92190 1.90716 1.49362 1.53680 1.46052 1.45749 1.67914 1.14316 1.08337 1.21757 0.97032 0.96563 0.83356 0.87909 1.24228 0.98529 0.97289 1.02053 1.23126 0.95194 0.88627 0.97358 0.88892 1.60021 1.59499 1.03819 1.05427 1.21716 0.96448 0.91583 0.98520 1.19833 0.84681 0.84502 0.88451 1.90526 1.45895 1.84039 1.26270 1.41877 1.47089 1.09456 1.21656 1.19765 1.31550 0.88307 1.03215 0.87848 1.25269 0.96522 0.99225 0.96996 1.69621 1.34701 1.27736 1.22289 0.85793 0.77983 0.80592 0.79944 1.19199 1.20777 1.20731 1.23459 0.96657 0.93129 1.03815 1.22737 0.93436 1.00207 0.96621 1.22869 0.99244 0.97962 0.96451 1.22826 0.97493 1.00795 0.96860 1.22894 0.98881 1.00045 0.94830 0.93889 0.93641 0.89155 0.76562 0.88805 0.91367 0.82660 0.93873 0.89683 0.77488 0.91930 0.90873 0.88063 0.87681 0.88638 0.91652 0.90235 0.91299 0.91301 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.81 101.05 1.09 1.29 16 2 O -0.35 -3.29 7.99 -55.09 -0.44 -3.73 16 3 C 0.08 0.65 2.53 -27.88 -0.07 0.58 16 4 H 0.09 0.50 7.79 -51.93 -0.40 0.10 16 5 C 0.49 5.12 7.11 -10.98 -0.08 5.04 16 6 O -0.52 -7.68 16.11 -14.31 -0.23 -7.91 16 7 N -0.71 -5.95 5.20 -53.02 -0.28 -6.23 16 8 C 0.12 1.17 4.32 -67.12 -0.29 0.88 16 9 H 0.10 1.17 7.46 -51.93 -0.39 0.79 16 10 C -0.18 -1.89 7.51 -25.82 -0.19 -2.08 16 11 C 0.07 0.76 4.08 -66.80 -0.27 0.49 16 12 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 13 N -0.66 -10.11 6.24 -107.02 -0.67 -10.78 16 14 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 15 C 0.44 10.28 7.82 -10.99 -0.09 10.20 16 16 O -0.58 -15.77 15.78 5.55 0.09 -15.69 16 17 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 22 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.13 -1.29 7.62 -25.92 -0.20 -1.49 16 27 C -0.11 -0.71 3.54 -89.81 -0.32 -1.03 16 28 C -0.13 -0.96 7.48 -25.83 -0.19 -1.16 16 29 C -0.14 -0.84 8.09 -25.83 -0.21 -1.05 16 30 C -0.13 -0.72 7.54 -25.92 -0.20 -0.92 16 31 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 2.35 8.57 -40.82 -0.35 2.00 16 35 H 0.09 1.01 7.82 -51.93 -0.41 0.61 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.35 5.69 7.90 -39.29 -0.31 5.38 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.33 8.13 -51.93 -0.42 0.90 16 40 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.11 0.54 7.97 -51.93 -0.41 0.12 16 45 H 0.10 0.88 7.03 -51.93 -0.36 0.51 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.09 0.53 7.72 -51.93 -0.40 0.13 16 LS Contribution 411.29 15.07 6.20 6.20 Total: -1.00 -33.97 411.29 -9.32 -43.29 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -8.35 Total: 13.24 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.28 Total: 3.59 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.28 Total: -54.93 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.58 Total: -27.33 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.97 -9.32 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317083605.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.385 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds