Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 114.00237 * 2 1 4 4 H 1.09008 * 109.47285 * 23.32091 * 3 2 1 5 5 C 1.50703 * 109.47427 * 143.32206 * 3 2 1 6 6 O 1.21281 * 119.99676 * 5.00353 * 5 3 2 7 7 N 1.34769 * 120.00159 * 184.99802 * 5 3 2 8 8 C 1.46504 * 120.00125 * 179.97438 * 7 5 3 9 9 H 1.09002 * 109.52975 * 325.10280 * 8 7 5 10 10 C 1.53122 * 109.50039 * 85.19674 * 8 7 5 11 11 C 1.53116 * 109.15713 * 177.59597 * 10 8 7 12 12 C 1.53039 * 109.28085 * 302.34870 * 11 10 8 13 13 N 1.46838 * 109.52281 * 59.18053 * 12 11 10 14 14 C 1.46902 * 110.99850 * 174.16649 * 13 12 11 15 15 C 1.50703 * 109.46731 * 294.20614 * 14 13 12 16 16 O 1.21293 * 120.00152 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00030 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00106 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00620 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99969 * 179.72221 * 18 17 15 21 21 N 1.31411 * 120.00254 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47169 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47173 * 119.99956 * 22 20 18 25 25 H 1.48499 * 109.47408 * 240.00076 * 22 20 18 26 26 C 1.46848 * 111.19763 * 298.25511 * 13 12 11 27 27 C 1.53008 * 109.47157 * 263.32501 * 3 2 1 28 28 C 1.52997 * 117.49679 * 11.62832 * 27 3 2 29 29 C 1.53002 * 117.49442 * 302.97024 * 27 3 2 30 30 H 1.09000 * 109.47530 * 174.69494 * 1 2 3 31 31 H 1.09002 * 109.47366 * 294.69612 * 1 2 3 32 32 H 1.09006 * 109.47345 * 54.69459 * 1 2 3 33 33 H 0.97004 * 120.00002 * 0.02562 * 7 5 3 34 34 H 1.09002 * 109.52356 * 297.50377 * 10 8 7 35 35 H 1.08995 * 109.52287 * 57.69484 * 10 8 7 36 36 H 1.09005 * 109.50484 * 62.29011 * 11 10 8 37 37 H 1.09003 * 109.50147 * 182.36519 * 11 10 8 38 38 H 1.08999 * 109.45740 * 299.16172 * 12 11 10 39 39 H 1.09007 * 109.46135 * 179.19937 * 12 11 10 40 40 H 1.09001 * 109.47287 * 174.21261 * 14 13 12 41 41 H 1.08999 * 109.47378 * 54.20310 * 14 13 12 42 42 H 0.96998 * 120.00192 * 359.97438 * 17 15 14 43 43 H 0.97005 * 120.00071 * 180.02562 * 21 20 18 44 44 H 1.08994 * 109.46259 * 181.76105 * 26 13 12 45 45 H 1.09002 * 109.46715 * 301.74132 * 26 13 12 46 46 H 1.08999 * 115.55175 * 157.30171 * 27 3 2 47 47 H 1.09002 * 117.50078 * 0.02562 * 28 27 3 48 48 H 1.09004 * 117.49736 * 145.02145 * 28 27 3 49 49 H 1.09002 * 117.49500 * 214.97764 * 29 27 3 50 50 H 1.09004 * 117.49852 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.2959 2.0212 0.4069 5 6 3.2556 1.3008 0.8487 6 8 3.6609 0.2617 1.3250 7 7 3.9189 2.4513 1.0782 8 6 5.1292 2.4470 1.9037 9 1 5.0265 1.7066 2.6970 10 6 6.3401 2.0992 1.0335 11 6 7.6076 2.1557 1.8906 12 6 7.7383 3.5498 2.5083 13 7 6.5562 3.8345 3.3315 14 6 6.7094 5.1064 4.0505 15 6 7.8294 4.9856 5.0515 16 8 8.4396 3.9426 5.1560 17 7 8.1524 6.0363 5.8314 18 6 9.1716 5.9266 6.7417 19 1 9.7155 4.9982 6.8343 20 6 9.5084 7.0116 7.5417 21 7 8.8502 8.1431 7.4254 22 14 10.8967 6.8620 8.7826 23 1 11.4739 5.4953 8.7171 24 1 11.9510 7.8597 8.4685 25 1 10.3694 7.1122 10.1480 26 6 5.3317 3.8326 2.5208 27 6 2.3709 1.7031 -1.4328 28 6 1.8264 0.8314 -2.5662 29 6 3.3134 0.7789 -2.2064 30 1 -0.3634 -1.0232 -0.0950 31 1 -0.3634 0.4294 0.9337 32 1 -0.3634 0.5939 -0.8387 33 1 3.5945 3.2824 0.6974 34 1 6.2200 1.0952 0.6265 35 1 6.4202 2.8170 0.2171 36 1 7.5441 1.4107 2.6839 37 1 8.4779 1.9501 1.2673 38 1 7.8158 4.2927 1.7145 39 1 8.6324 3.5889 3.1307 40 1 5.7813 5.3438 4.5706 41 1 6.9411 5.8998 3.3400 42 1 7.6642 6.8703 5.7482 43 1 9.0856 8.9007 7.9837 44 1 4.4777 4.0772 3.1524 45 1 5.4205 4.5742 1.7269 46 1 2.4532 2.7743 -1.6168 47 1 1.2110 -0.0252 -2.2911 48 1 1.5509 1.3291 -3.4960 49 1 4.0155 1.2421 -2.8997 50 1 3.6768 -0.1122 -1.6945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317968706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -82.774988 kcal Electronic energy + Delta-G solvation = -29902.991197 eV Core-core repulsion = 25738.325113 eV Total energy + Delta-G solvation = -4164.666084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60145 -39.32684 -38.32069 -37.37739 -36.26446 -34.75795 -33.83361 -32.65192 -31.20032 -30.39192 -28.64061 -27.41254 -26.40299 -24.68568 -23.15368 -22.82598 -22.64015 -21.68470 -20.32270 -19.82384 -19.17048 -17.88623 -17.59753 -17.37681 -16.79446 -16.06144 -15.83749 -15.36766 -15.09895 -14.89241 -14.78409 -14.65901 -14.44821 -14.02518 -13.85853 -13.75753 -13.42550 -13.28678 -13.13386 -13.03395 -12.45863 -12.27112 -12.06743 -11.79217 -11.74482 -11.53578 -11.45000 -11.29815 -11.07384 -11.01487 -10.82668 -10.78342 -10.56727 -10.41219 -10.33008 -10.23807 -10.21994 -9.59927 -9.46682 -9.16282 -8.44154 -7.97879 -7.86196 -6.41671 -3.82187 2.42104 2.58580 3.16600 3.27326 3.29022 3.34675 3.61082 3.90309 4.04653 4.17476 4.26170 4.40950 4.44378 4.71897 4.74706 4.80553 4.83292 4.88611 4.98854 5.02413 5.06188 5.15605 5.25231 5.27455 5.32641 5.32708 5.39168 5.48421 5.59017 5.64406 5.71380 5.73373 5.81214 5.85336 5.91565 6.00727 6.10295 6.13525 6.25535 6.32804 6.49383 6.57988 6.62678 7.24671 7.34204 7.39439 7.55910 8.07052 8.07602 8.62077 9.18700 9.54741 10.06535 10.76157 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028716 B = 0.001908 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.816114 B =14672.685767 C =14918.005127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.102 3.898 4 H 0.091 0.909 5 C 0.519 3.481 6 O -0.515 6.515 7 N -0.722 5.722 8 C 0.150 3.850 9 H 0.099 0.901 10 C -0.127 4.127 11 C -0.111 4.111 12 C 0.050 3.950 13 N -0.511 5.511 14 C 0.048 3.952 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.051 3.949 27 C -0.186 4.186 28 C -0.165 4.165 29 C -0.164 4.164 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.397 0.603 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.117 0.883 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.148 -7.418 -20.405 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.272 6.272 3 C 0.040 3.960 4 H 0.108 0.892 5 C 0.303 3.697 6 O -0.389 6.389 7 N -0.374 5.374 8 C 0.046 3.954 9 H 0.117 0.883 10 C -0.166 4.166 11 C -0.149 4.149 12 C -0.077 4.077 13 N -0.235 5.235 14 C -0.083 4.083 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.202 5.202 18 C -0.426 4.426 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.078 4.078 27 C -0.204 4.204 28 C -0.202 4.202 29 C -0.201 4.201 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.135 0.865 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.345 -9.278 -19.513 27.092 hybrid contribution -0.043 2.062 -0.218 2.074 sum -16.388 -7.216 -19.731 26.645 Atomic orbital electron populations 1.22947 0.80559 1.03276 1.00298 1.88034 1.19722 1.24865 1.94565 1.21394 0.94155 0.87016 0.93437 0.89155 1.20267 0.84731 0.83991 0.80714 1.90746 1.67287 1.31249 1.49604 1.45915 1.28233 1.09869 1.53426 1.20959 0.83004 0.98356 0.93063 0.88258 1.21961 0.94734 1.01791 0.98074 1.21509 0.96377 0.98045 0.99004 1.22322 0.95064 0.95215 0.95105 1.61380 1.01646 1.32541 1.27980 1.21835 0.99950 0.89965 0.96570 1.19713 0.87034 0.85244 0.85096 1.90496 1.55393 1.28860 1.71133 1.41868 1.32137 1.12635 1.33520 1.19750 1.10043 0.99803 1.13041 0.87826 1.25261 0.99019 0.94889 0.98867 1.69620 1.41367 1.02587 1.40827 0.85805 0.80297 0.78535 0.79737 1.19199 1.20818 1.20767 1.22249 0.94399 0.95054 0.96069 1.22711 1.07997 0.98061 0.91659 1.22960 0.97509 1.02105 0.97605 1.22935 0.92875 1.01722 1.02581 0.89109 0.93723 0.93509 0.76961 0.91519 0.92369 0.90591 0.91446 0.96002 0.87580 0.89317 0.93428 0.77528 0.91963 0.90360 0.94823 0.86523 0.87891 0.88745 0.88665 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.98 101.05 1.01 1.17 16 2 O -0.35 -3.61 8.59 -55.09 -0.47 -4.08 16 3 C 0.10 0.86 2.97 -27.88 -0.08 0.78 16 4 H 0.09 0.54 7.74 -51.92 -0.40 0.14 16 5 C 0.52 6.02 6.87 -10.99 -0.08 5.95 16 6 O -0.52 -8.47 16.17 -14.30 -0.23 -8.71 16 7 N -0.72 -6.90 5.04 -53.72 -0.27 -7.17 16 8 C 0.15 1.84 2.62 -67.85 -0.18 1.66 16 9 H 0.10 1.53 7.58 -51.93 -0.39 1.13 16 10 C -0.13 -1.55 5.58 -26.61 -0.15 -1.70 16 11 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 12 C 0.05 0.81 5.10 -3.84 -0.02 0.79 16 13 N -0.51 -8.35 4.40 -236.12 -1.04 -9.39 16 14 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 15 C 0.44 10.32 7.46 -10.99 -0.08 10.24 16 16 O -0.57 -15.29 13.90 5.55 0.08 -15.22 16 17 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 18 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 22 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.05 0.63 4.93 -3.83 -0.02 0.61 16 27 C -0.19 -1.26 5.77 -90.62 -0.52 -1.78 16 28 C -0.16 -1.07 9.54 -26.69 -0.25 -1.33 16 29 C -0.16 -1.31 9.85 -26.69 -0.26 -1.57 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.21 7.58 -51.93 -0.39 -0.18 16 33 H 0.40 2.54 8.60 -40.82 -0.35 2.18 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 2.10 5.78 -51.93 -0.30 1.80 16 40 H 0.09 1.39 7.99 -51.93 -0.41 0.97 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 45 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.72 6.25 -51.93 -0.32 0.40 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -34.06 403.44 -9.61 -43.66 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -8.32 Total: 10.69 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.07 Total: 6.02 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.64 Total: -54.45 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.63 Total: -28.00 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.06 -9.61 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317968706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.113 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds