Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99889 * 2 1 4 4 H 1.08997 * 110.67658 * 31.77923 * 3 2 1 5 5 C 1.54889 * 110.75322 * 268.54284 * 3 2 1 6 6 C 1.54271 * 104.19733 * 203.74515 * 5 3 2 7 7 C 1.53873 * 106.59562 * 23.61057 * 6 5 3 8 8 H 1.09002 * 110.02817 * 119.33691 * 7 6 5 9 9 N 1.46499 * 110.03297 * 240.71547 * 7 6 5 10 10 C 1.34779 * 119.99725 * 273.55120 * 9 7 6 11 11 O 1.21341 * 120.00646 * 359.97438 * 10 9 7 12 12 C 1.49456 * 119.99668 * 179.97438 * 10 9 7 13 13 O 1.21351 * 120.00180 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00063 * 179.97438 * 12 10 9 15 15 C 1.46503 * 120.00181 * 180.27503 * 14 12 10 16 16 C 1.53040 * 109.45552 * 274.74915 * 15 14 12 17 17 C 1.53198 * 109.30692 * 178.59867 * 16 15 14 18 18 N 1.46930 * 108.76464 * 54.65794 * 17 16 15 19 19 C 1.36941 * 120.62839 * 126.35632 * 18 17 16 20 20 H 1.07998 * 119.99625 * 207.69878 * 19 18 17 21 21 C 1.38811 * 119.99851 * 27.70419 * 19 18 17 22 22 N 1.31610 * 120.00327 * 17.34610 * 21 19 18 23 23 Si 1.86798 * 119.99523 * 197.34678 * 21 19 18 24 24 H 1.48500 * 109.47344 * 59.99870 * 23 21 19 25 25 H 1.48504 * 109.47201 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47307 * 299.99722 * 23 21 19 27 27 C 1.46919 * 118.73907 * 306.38411 * 18 17 16 28 28 C 1.53036 * 109.46074 * 154.69712 * 15 14 12 29 29 C 1.54262 * 106.60120 * 359.97438 * 7 6 5 30 30 H 1.08999 * 109.47014 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47601 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46955 * 300.00361 * 1 2 3 33 33 H 1.09001 * 110.48942 * 85.06561 * 5 3 2 34 34 H 1.08995 * 110.60176 * 322.47915 * 5 3 2 35 35 H 1.08996 * 110.02989 * 264.32622 * 6 5 3 36 36 H 1.08996 * 110.07301 * 142.91858 * 6 5 3 37 37 H 0.96995 * 120.00167 * 93.54059 * 9 7 6 38 38 H 0.97005 * 120.00135 * 359.97438 * 14 12 10 39 39 H 1.08995 * 109.45499 * 34.72354 * 15 14 12 40 40 H 1.09003 * 109.50273 * 298.56056 * 16 15 14 41 41 H 1.08999 * 109.49849 * 58.66765 * 16 15 14 42 42 H 1.08999 * 109.60070 * 294.86881 * 17 16 15 43 43 H 1.09004 * 109.58303 * 174.43689 * 17 16 15 44 44 H 0.96998 * 120.00013 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.58278 * 293.82157 * 27 18 17 46 46 H 1.08998 * 109.70884 * 173.46865 * 27 18 17 47 47 H 1.09003 * 109.49884 * 301.33489 * 28 15 14 48 48 H 1.08999 * 109.50143 * 61.39862 * 28 15 14 49 49 H 1.09006 * 110.48424 * 95.06525 * 29 7 6 50 50 H 1.08995 * 110.48783 * 217.71132 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3748 2.0096 0.5371 5 6 2.2671 1.7918 -1.4479 6 6 3.3892 2.8403 -1.3014 7 6 4.1316 2.5098 0.0052 8 1 5.1770 2.2848 -0.2060 9 7 4.0394 3.6388 0.9342 10 6 4.9387 4.6406 0.8685 11 8 5.8249 4.6072 0.0404 12 6 4.8443 5.7927 1.8159 13 8 3.9578 5.8264 2.6439 14 7 5.7438 6.7943 1.7506 15 6 5.6549 7.9206 2.6832 16 6 4.6803 8.9636 2.1313 17 6 4.5632 10.1234 3.1253 18 7 5.9086 10.6435 3.4054 19 6 6.1881 11.9751 3.2500 20 1 7.1934 12.2918 3.0146 21 6 5.1794 12.9176 3.3953 22 7 4.0585 12.5934 4.0040 23 14 5.4131 14.6460 2.7266 24 1 5.6371 14.5834 1.2600 25 1 4.1994 15.4541 3.0084 26 1 6.5887 15.2751 3.3805 27 6 6.9483 9.7078 3.8548 28 6 7.0383 8.5525 2.8529 29 6 3.4344 1.2725 0.6074 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.3686 2.2499 -1.8616 34 1 2.5970 0.9654 -2.0773 35 1 2.9603 3.8407 -1.2443 36 1 4.0742 2.7757 -2.1467 37 1 3.3312 3.6655 1.5964 38 1 6.4527 6.7672 1.0890 39 1 5.2972 7.5647 3.6493 40 1 5.0503 9.3383 1.1769 41 1 3.7010 8.5069 1.9885 42 1 4.1091 9.7679 4.0502 43 1 3.9485 10.9136 2.6941 44 1 3.3538 13.2521 4.1058 45 1 6.6885 9.3183 4.8392 46 1 7.9079 10.2220 3.9069 47 1 7.7376 7.8031 3.2237 48 1 7.3862 8.9304 1.8915 49 1 3.9534 0.3606 0.3119 50 1 3.3882 1.3515 1.6935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327287753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -101.290309 kcal Electronic energy + Delta-G solvation = -29702.828835 eV Core-core repulsion = 25537.359867 eV Total energy + Delta-G solvation = -4165.468968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85996 -39.59899 -38.57771 -37.33524 -36.76656 -34.65932 -33.42507 -32.14652 -30.15242 -29.58298 -29.29716 -28.26012 -26.46782 -25.58062 -24.08378 -22.29872 -21.86390 -21.24510 -20.67349 -20.34149 -19.57896 -18.32574 -17.41374 -16.89533 -16.73964 -16.43695 -15.94183 -15.56994 -15.40331 -15.28762 -14.76757 -14.23508 -14.17690 -13.94787 -13.72472 -13.65676 -13.54468 -13.25119 -13.03337 -12.64630 -12.46422 -12.37665 -12.13648 -11.83174 -11.75201 -11.68402 -11.53171 -11.27818 -11.13366 -11.03986 -10.96640 -10.73083 -10.44622 -10.29669 -10.11741 -10.01312 -9.80568 -9.79488 -9.50792 -9.44003 -8.86376 -8.45800 -6.71858 -5.80587 -3.23131 1.41352 2.31558 3.19544 3.28455 3.37817 3.43906 3.44959 3.61884 4.02491 4.09863 4.46540 4.48223 4.57291 4.79053 4.83086 4.87763 4.96970 5.03120 5.08112 5.13786 5.22484 5.26682 5.34672 5.36787 5.41393 5.54591 5.55738 5.60592 5.68182 5.75867 5.76222 6.01475 6.09053 6.17182 6.22203 6.35966 6.51933 6.61222 6.69255 6.73447 6.75345 6.89340 6.93151 7.32433 7.41426 7.64114 7.71957 7.77836 8.06659 8.42778 9.18769 9.82039 10.38238 11.28122 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.001949 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.883110 B =14363.471552 C =14810.119659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.079 3.921 4 H 0.072 0.928 5 C -0.146 4.146 6 C -0.134 4.134 7 C 0.141 3.859 8 H 0.101 0.899 9 N -0.700 5.700 10 C 0.510 3.490 11 O -0.520 6.520 12 C 0.502 3.498 13 O -0.522 6.522 14 N -0.690 5.690 15 C 0.148 3.852 16 C -0.147 4.147 17 C 0.174 3.826 18 N -0.592 5.592 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.149 3.851 28 C -0.140 4.140 29 C -0.126 4.126 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.407 0.593 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.091 0.909 44 H 0.255 0.745 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.095 0.905 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -24.511 -8.925 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.021 3.979 4 H 0.090 0.910 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.037 3.963 8 H 0.119 0.881 9 N -0.354 5.354 10 C 0.291 3.709 11 O -0.395 6.395 12 C 0.281 3.719 13 O -0.399 6.399 14 N -0.341 5.341 15 C 0.045 3.955 16 C -0.188 4.188 17 C 0.047 3.953 18 N -0.315 5.315 19 C -0.385 4.385 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.180 4.180 29 C -0.164 4.164 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.243 0.757 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.531 -24.531 -8.870 26.324 hybrid contribution -0.257 1.120 -0.427 1.225 sum -3.789 -23.412 -9.297 25.473 Atomic orbital electron populations 1.22795 0.80889 1.02816 1.00157 1.87892 1.19811 1.27328 1.94947 1.23212 0.94367 0.84647 0.95702 0.90975 1.22858 0.98927 0.99143 0.97433 1.22542 0.97544 0.99618 0.97530 1.21624 1.01470 0.84550 0.88705 0.88138 1.45964 1.31507 1.20970 1.36941 1.20411 0.82127 0.83833 0.84562 1.90748 1.33935 1.77989 1.36877 1.20006 0.83348 0.83734 0.84791 1.90772 1.33663 1.78543 1.36893 1.46202 1.30242 1.20999 1.36691 1.21241 0.97492 0.84358 0.92364 1.22597 0.97537 0.97393 1.01245 1.20775 0.87390 0.92910 0.94196 1.44097 1.06816 1.03981 1.76589 1.19136 0.95800 0.81715 1.41821 0.91617 1.25050 0.97700 0.97871 0.98997 1.70018 1.07258 1.34435 1.42862 0.86362 0.76997 0.84258 0.79096 1.21029 1.21643 1.20858 1.20835 0.93703 0.89846 0.93437 1.22369 0.94459 0.99014 1.02175 1.22675 0.94611 0.98070 1.01034 0.93976 0.89591 0.93850 0.91289 0.90260 0.90726 0.90303 0.75120 0.75721 0.89568 0.92372 0.92784 0.96021 0.89080 0.93502 0.96101 0.92151 0.92375 0.91553 0.88676 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.88 101.05 1.10 1.27 16 2 O -0.38 -3.05 10.49 -35.23 -0.37 -3.42 16 3 C 0.08 0.54 3.35 -24.75 -0.08 0.46 16 4 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 5 C -0.15 -0.97 6.55 -25.07 -0.16 -1.13 16 6 C -0.13 -1.02 6.59 -25.61 -0.17 -1.19 16 7 C 0.14 1.13 3.23 -66.82 -0.22 0.91 16 8 H 0.10 0.88 7.61 -51.93 -0.39 0.48 16 9 N -0.70 -6.78 4.94 -53.15 -0.26 -7.04 16 10 C 0.51 6.44 7.88 -11.58 -0.09 6.35 16 11 O -0.52 -7.43 16.15 5.50 0.09 -7.34 16 12 C 0.50 7.36 7.86 -11.58 -0.09 7.26 16 13 O -0.52 -8.83 16.14 5.50 0.09 -8.74 16 14 N -0.69 -10.06 5.07 -54.20 -0.27 -10.34 16 15 C 0.15 2.52 2.42 -67.89 -0.16 2.36 16 16 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 17 C 0.17 4.14 5.31 -3.71 -0.02 4.12 16 18 N -0.59 -14.54 2.99 -172.32 -0.52 -15.06 16 19 C -0.26 -6.89 9.59 -15.06 -0.14 -7.03 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 22 N -0.90 -26.04 11.19 55.49 0.62 -25.41 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.15 3.00 6.51 -3.72 -0.02 2.98 16 28 C -0.14 -2.30 5.55 -26.62 -0.15 -2.45 16 29 C -0.13 -0.83 6.15 -25.09 -0.15 -0.99 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.22 8.11 -51.93 -0.42 -0.20 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 7.92 -51.93 -0.41 0.24 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.41 3.65 8.03 -40.82 -0.33 3.32 16 38 H 0.41 5.33 8.07 -40.82 -0.33 5.00 16 39 H 0.09 1.60 7.57 -51.93 -0.39 1.20 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.52 7.97 -51.93 -0.41 0.11 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -31.47 401.33 -8.66 -40.13 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.45 Total: 4.80 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.60 Total: 9.88 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.43 Total: -57.85 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.19 Total: -19.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.47 -8.66 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327287753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.164 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds