Wall clock time and date at job start Sat Apr 11 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99889 * 2 1 4 4 H 1.08997 * 110.67658 * 31.77923 * 3 2 1 5 5 C 1.54889 * 110.75322 * 268.54284 * 3 2 1 6 6 C 1.54271 * 104.19733 * 203.74515 * 5 3 2 7 7 C 1.53873 * 106.59562 * 23.61057 * 6 5 3 8 8 H 1.09002 * 110.02817 * 119.33691 * 7 6 5 9 9 N 1.46499 * 110.03297 * 240.71547 * 7 6 5 10 10 C 1.34779 * 119.99725 * 273.55120 * 9 7 6 11 11 O 1.21341 * 120.00646 * 359.97438 * 10 9 7 12 12 C 1.49456 * 119.99668 * 179.97438 * 10 9 7 13 13 O 1.21351 * 120.00180 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00063 * 179.97438 * 12 10 9 15 15 C 1.46503 * 120.00181 * 180.27503 * 14 12 10 16 16 C 1.53040 * 109.45552 * 274.74915 * 15 14 12 17 17 C 1.53198 * 109.30692 * 178.59867 * 16 15 14 18 18 N 1.46930 * 108.76464 * 54.65794 * 17 16 15 19 19 C 1.36941 * 120.62839 * 126.35632 * 18 17 16 20 20 H 1.07998 * 119.99625 * 207.69878 * 19 18 17 21 21 C 1.38811 * 119.99851 * 27.70419 * 19 18 17 22 22 N 1.31610 * 120.00327 * 17.34610 * 21 19 18 23 23 Si 1.86798 * 119.99523 * 197.34678 * 21 19 18 24 24 H 1.48500 * 109.47344 * 59.99870 * 23 21 19 25 25 H 1.48504 * 109.47201 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47307 * 299.99722 * 23 21 19 27 27 C 1.46919 * 118.73907 * 306.38411 * 18 17 16 28 28 C 1.53036 * 109.46074 * 154.69712 * 15 14 12 29 29 C 1.54262 * 106.60120 * 359.97438 * 7 6 5 30 30 H 1.08999 * 109.47014 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47601 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46955 * 300.00361 * 1 2 3 33 33 H 1.09001 * 110.48942 * 85.06561 * 5 3 2 34 34 H 1.08995 * 110.60176 * 322.47915 * 5 3 2 35 35 H 1.08996 * 110.02989 * 264.32622 * 6 5 3 36 36 H 1.08996 * 110.07301 * 142.91858 * 6 5 3 37 37 H 0.96995 * 120.00167 * 93.54059 * 9 7 6 38 38 H 0.97005 * 120.00135 * 359.97438 * 14 12 10 39 39 H 1.08995 * 109.45499 * 34.72354 * 15 14 12 40 40 H 1.09003 * 109.50273 * 298.56056 * 16 15 14 41 41 H 1.08999 * 109.49849 * 58.66765 * 16 15 14 42 42 H 1.08999 * 109.60070 * 294.86881 * 17 16 15 43 43 H 1.09004 * 109.58303 * 174.43689 * 17 16 15 44 44 H 0.96998 * 120.00013 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.58278 * 293.82157 * 27 18 17 46 46 H 1.08998 * 109.70884 * 173.46865 * 27 18 17 47 47 H 1.09003 * 109.49884 * 301.33489 * 28 15 14 48 48 H 1.08999 * 109.50143 * 61.39862 * 28 15 14 49 49 H 1.09006 * 110.48424 * 95.06525 * 29 7 6 50 50 H 1.08995 * 110.48783 * 217.71132 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3748 2.0096 0.5371 5 6 2.2671 1.7918 -1.4479 6 6 3.3892 2.8403 -1.3014 7 6 4.1316 2.5098 0.0052 8 1 5.1770 2.2848 -0.2060 9 7 4.0394 3.6388 0.9342 10 6 4.9387 4.6406 0.8685 11 8 5.8249 4.6072 0.0404 12 6 4.8443 5.7927 1.8159 13 8 3.9578 5.8264 2.6439 14 7 5.7438 6.7943 1.7506 15 6 5.6549 7.9206 2.6832 16 6 4.6803 8.9636 2.1313 17 6 4.5632 10.1234 3.1253 18 7 5.9086 10.6435 3.4054 19 6 6.1881 11.9751 3.2500 20 1 7.1934 12.2918 3.0146 21 6 5.1794 12.9176 3.3953 22 7 4.0585 12.5934 4.0040 23 14 5.4131 14.6460 2.7266 24 1 5.6371 14.5834 1.2600 25 1 4.1994 15.4541 3.0084 26 1 6.5887 15.2751 3.3805 27 6 6.9483 9.7078 3.8548 28 6 7.0383 8.5525 2.8529 29 6 3.4344 1.2725 0.6074 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.3686 2.2499 -1.8616 34 1 2.5970 0.9654 -2.0773 35 1 2.9603 3.8407 -1.2443 36 1 4.0742 2.7757 -2.1467 37 1 3.3312 3.6655 1.5964 38 1 6.4527 6.7672 1.0890 39 1 5.2972 7.5647 3.6493 40 1 5.0503 9.3383 1.1769 41 1 3.7010 8.5069 1.9885 42 1 4.1091 9.7679 4.0502 43 1 3.9485 10.9136 2.6941 44 1 3.3538 13.2521 4.1058 45 1 6.6885 9.3183 4.8392 46 1 7.9079 10.2220 3.9069 47 1 7.7376 7.8031 3.2237 48 1 7.3862 8.9304 1.8915 49 1 3.9534 0.3606 0.3119 50 1 3.3882 1.3515 1.6935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327287753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:04 Heat of formation + Delta-G solvation = -123.497500 kcal Electronic energy + Delta-G solvation = -29703.791811 eV Core-core repulsion = 25537.359867 eV Total energy + Delta-G solvation = -4166.431945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89989 -40.50508 -39.54189 -38.82575 -37.46347 -36.16991 -34.34386 -33.84782 -31.82820 -31.29230 -29.85815 -28.94895 -27.32407 -26.85424 -25.45885 -23.93764 -23.39033 -21.79615 -21.58832 -21.30885 -21.09165 -19.54412 -18.65473 -18.20619 -17.66888 -17.12260 -17.03268 -16.85714 -16.54286 -16.32337 -15.80542 -15.66381 -15.36354 -15.19095 -15.07535 -14.77276 -14.52715 -14.43916 -14.20601 -14.10499 -13.79959 -13.22361 -13.10159 -13.03445 -12.88611 -12.65542 -12.57738 -12.56736 -12.30580 -12.27787 -12.14904 -12.08949 -11.90097 -11.85067 -11.57887 -11.56574 -11.40560 -10.69431 -10.58085 -10.55630 -10.30785 -10.16980 -8.71499 -7.87495 -5.32650 0.32083 1.27629 1.48210 1.50652 1.57202 2.11767 2.52018 2.59042 2.76373 3.28222 3.37524 3.47071 3.54090 3.66896 3.82417 4.01917 4.02021 4.22160 4.27451 4.28505 4.36223 4.45378 4.47058 4.54534 4.57000 4.59544 4.64697 4.73258 4.77768 4.81785 4.89916 4.95462 4.99029 5.02944 5.03525 5.09499 5.11116 5.19202 5.29990 5.32353 5.36967 5.45947 5.64247 5.69899 5.91943 6.26503 6.34440 6.38890 6.72450 6.93695 7.13931 7.84835 8.36700 9.19461 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.001949 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.883110 B =14363.471552 C =14810.119659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.077 3.923 4 H 0.076 0.924 5 C -0.139 4.139 6 C -0.131 4.131 7 C 0.141 3.859 8 H 0.097 0.903 9 N -0.685 5.685 10 C 0.517 3.483 11 O -0.537 6.537 12 C 0.502 3.498 13 O -0.546 6.546 14 N -0.682 5.682 15 C 0.159 3.841 16 C -0.132 4.132 17 C 0.182 3.818 18 N -0.610 5.610 19 C -0.262 4.262 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.274 1.274 27 C 0.143 3.857 28 C -0.125 4.125 29 C -0.119 4.119 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.418 0.582 38 H 0.418 0.582 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.052 0.948 42 H -0.004 1.004 43 H 0.057 0.943 44 H 0.250 0.750 45 H 0.017 0.983 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -26.011 -10.052 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.019 3.981 4 H 0.094 0.906 5 C -0.177 4.177 6 C -0.170 4.170 7 C 0.037 3.963 8 H 0.115 0.885 9 N -0.338 5.338 10 C 0.297 3.703 11 O -0.414 6.414 12 C 0.282 3.718 13 O -0.424 6.424 14 N -0.334 5.334 15 C 0.056 3.944 16 C -0.173 4.173 17 C 0.055 3.945 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.199 1.199 27 C 0.017 3.983 28 C -0.165 4.165 29 C -0.157 4.157 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.255 0.745 38 H 0.256 0.744 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.014 0.986 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.035 0.965 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.538 -26.082 -10.015 28.054 hybrid contribution -0.588 1.504 -0.042 1.615 sum -3.125 -24.578 -10.057 26.740 Atomic orbital electron populations 1.22946 0.79813 1.03755 1.00690 1.87862 1.21087 1.27785 1.95048 1.23249 0.94486 0.84546 0.95825 0.90594 1.22806 0.98679 0.98795 0.97449 1.22497 0.97818 0.99356 0.97284 1.21750 1.01598 0.84313 0.88631 0.88481 1.45979 1.30565 1.20438 1.36829 1.19959 0.82583 0.83751 0.84014 1.90750 1.34819 1.78319 1.37464 1.20385 0.82619 0.84105 0.84641 1.90768 1.34559 1.79127 1.37955 1.45952 1.30690 1.20255 1.36483 1.20893 0.97163 0.84374 0.92015 1.22341 0.98480 0.96522 0.99907 1.20496 0.86930 0.93225 0.93812 1.44345 1.07668 1.04122 1.77180 1.19513 0.95998 0.83005 1.40688 0.91019 1.25828 0.97671 1.01611 0.99739 1.70181 1.08072 1.35376 1.44610 0.85338 0.76688 0.79862 0.78536 1.20419 1.22321 1.19935 1.21025 0.92648 0.90358 0.94304 1.22181 0.94607 0.98206 1.01459 1.22631 0.94418 0.97406 1.01261 0.93383 0.88557 0.93376 0.90807 0.90099 0.91767 0.90160 0.74487 0.74434 0.90937 0.92204 0.92912 0.98618 0.92488 0.94134 0.96499 0.91396 0.88928 0.90849 0.88076 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.88 113.37 1.23 1.47 16 2 O -0.40 -5.74 10.49 -148.98 -1.56 -7.30 16 3 C 0.08 0.93 3.35 31.88 0.11 1.04 16 4 H 0.08 0.85 7.88 -2.39 -0.02 0.84 16 5 C -0.14 -1.62 6.55 31.67 0.21 -1.41 16 6 C -0.13 -1.81 6.59 31.32 0.21 -1.61 16 7 C 0.14 2.02 3.23 45.71 0.15 2.17 16 8 H 0.10 1.53 7.61 -2.39 -0.02 1.51 16 9 N -0.68 -12.19 4.94 -440.44 -2.17 -14.37 16 10 C 0.52 12.24 7.88 87.27 0.69 12.93 16 11 O -0.54 -14.35 16.15 -3.22 -0.05 -14.40 16 12 C 0.50 14.02 7.86 87.27 0.69 14.70 16 13 O -0.55 -18.00 16.14 -3.25 -0.05 -18.05 16 14 N -0.68 -18.62 5.07 -443.74 -2.25 -20.86 16 15 C 0.16 5.22 2.42 45.02 0.11 5.33 16 16 C -0.13 -5.15 5.65 30.67 0.17 -4.97 16 17 C 0.18 8.93 5.31 86.36 0.46 9.39 16 18 N -0.61 -30.13 2.99 -699.09 -2.09 -32.22 16 19 C -0.26 -14.18 9.59 84.03 0.81 -13.38 16 20 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 21 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 22 N -0.94 -55.76 11.19 21.65 0.24 -55.52 16 23 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.14 5.60 6.51 86.36 0.56 6.16 16 28 C -0.13 -3.81 5.55 30.67 0.17 -3.64 16 29 C -0.12 -1.36 6.15 31.66 0.19 -1.17 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.41 8.11 -2.39 -0.02 0.39 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.04 7.92 -2.39 -0.02 1.02 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 6.74 8.03 -92.71 -0.74 6.00 16 38 H 0.42 9.88 8.07 -92.70 -0.75 9.14 16 39 H 0.07 2.63 7.57 -2.39 -0.02 2.61 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.06 3.17 6.04 -2.38 -0.01 3.16 16 44 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 47 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 50 H 0.09 0.93 7.97 -2.39 -0.02 0.91 16 Total: -1.00 -68.15 401.33 -0.29 -68.44 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.54 Total: 23.12 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 6.17 Total: 24.46 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -6.28 Total: -122.97 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.67 Total: -39.76 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -68.15 -0.29 -68.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327287753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.054 kcal (2) G-P(sol) polarization free energy of solvation -68.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds