Wall clock time and date at job start Sat Apr 11 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00107 * 2 1 4 4 H 1.09001 * 110.01367 * 331.39130 * 3 2 1 5 5 C 1.54265 * 110.06947 * 92.80516 * 3 2 1 6 6 C 1.54895 * 104.19348 * 142.92106 * 5 3 2 7 7 C 1.54897 * 102.74665 * 322.05538 * 6 5 3 8 8 H 1.08997 * 110.59864 * 279.21298 * 7 6 5 9 9 N 1.46501 * 110.48569 * 156.62011 * 7 6 5 10 10 C 1.34776 * 119.99833 * 90.22489 * 9 7 6 11 11 O 1.21347 * 120.00016 * 0.02562 * 10 9 7 12 12 C 1.49455 * 119.99667 * 179.72421 * 10 9 7 13 13 O 1.21347 * 120.00259 * 0.27699 * 12 10 9 14 14 N 1.34775 * 119.99578 * 180.27858 * 12 10 9 15 15 C 1.46504 * 119.99744 * 180.02562 * 14 12 10 16 16 C 1.53036 * 109.45737 * 275.02496 * 15 14 12 17 17 C 1.53197 * 109.30980 * 178.59974 * 16 15 14 18 18 N 1.46928 * 108.76339 * 54.65696 * 17 16 15 19 19 C 1.36938 * 120.62961 * 126.40212 * 18 17 16 20 20 H 1.07996 * 119.99962 * 207.66162 * 19 18 17 21 21 C 1.38814 * 119.99767 * 27.66703 * 19 18 17 22 22 N 1.31621 * 120.00183 * 17.36285 * 21 19 18 23 23 Si 1.86797 * 119.99759 * 197.36286 * 21 19 18 24 24 H 1.48506 * 109.47391 * 60.00143 * 23 21 19 25 25 H 1.48506 * 109.47388 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47356 * 299.99920 * 23 21 19 27 27 C 1.46925 * 118.74088 * 306.37962 * 18 17 16 28 28 C 1.53045 * 109.45814 * 154.97094 * 15 14 12 29 29 C 1.53872 * 110.03406 * 209.99903 * 3 2 1 30 30 H 1.09002 * 109.47290 * 60.00180 * 1 2 3 31 31 H 1.09004 * 109.47111 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47353 * 300.00220 * 1 2 3 33 33 H 1.08997 * 110.48896 * 261.59605 * 5 3 2 34 34 H 1.08996 * 110.48985 * 24.11484 * 5 3 2 35 35 H 1.08995 * 110.75834 * 203.74384 * 6 5 3 36 36 H 1.09002 * 110.75849 * 80.37079 * 6 5 3 37 37 H 0.97006 * 120.00027 * 270.22987 * 9 7 6 38 38 H 0.96997 * 120.00462 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.45693 * 34.99865 * 15 14 12 40 40 H 1.08997 * 109.49756 * 298.56688 * 16 15 14 41 41 H 1.09000 * 109.49893 * 58.66603 * 16 15 14 42 42 H 1.09004 * 109.60002 * 294.87038 * 17 16 15 43 43 H 1.09002 * 109.58421 * 174.43618 * 17 16 15 44 44 H 0.97007 * 119.99636 * 179.97438 * 22 21 19 45 45 H 1.08992 * 109.58900 * 293.82874 * 27 18 17 46 46 H 1.08995 * 109.58923 * 173.39403 * 27 18 17 47 47 H 1.09002 * 109.49728 * 301.33601 * 28 15 14 48 48 H 1.08998 * 109.49906 * 61.43535 * 28 15 14 49 49 H 1.09003 * 110.03044 * 121.38103 * 29 3 2 50 50 H 1.08995 * 110.06988 * 359.97260 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0120 -0.4904 5 6 2.2903 1.7602 1.4472 6 6 3.6247 2.5405 1.3486 7 6 4.4265 1.7167 0.3104 8 1 4.8834 0.8465 0.7817 9 7 5.4496 2.5502 -0.3259 10 6 6.6844 2.6269 0.2086 11 8 6.9489 2.0052 1.2166 12 6 7.7299 3.4723 -0.4440 13 8 7.4655 4.0936 -1.4522 14 7 8.9664 3.5446 0.0874 15 6 9.9911 4.3738 -0.5520 16 6 10.6739 3.5735 -1.6634 17 6 11.7204 4.4549 -2.3527 18 7 12.6406 4.9799 -1.3347 19 6 13.9935 4.8130 -1.4646 20 1 14.6199 4.7755 -0.5857 21 6 14.5599 4.6920 -2.7262 22 7 13.8838 5.0705 -3.7902 23 14 16.2815 3.9920 -2.9138 24 1 16.3159 2.6100 -2.3711 25 1 16.6522 3.9679 -4.3517 26 1 17.2451 4.8408 -2.1679 27 6 12.0817 5.6878 -0.1749 28 6 11.0310 4.7927 0.4897 29 6 3.3683 1.2778 -0.7228 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.4927 2.4121 1.8035 34 1 2.3985 0.8972 2.1042 35 1 4.1370 2.5530 2.3106 36 1 3.4534 3.5548 0.9879 37 1 5.2382 3.0469 -1.1318 38 1 9.1776 3.0482 0.8935 39 1 9.5253 5.2624 -0.9780 40 1 11.1611 2.6978 -1.2346 41 1 9.9292 3.2554 -2.3930 42 1 11.2245 5.2832 -2.8590 43 1 12.2775 3.8616 -3.0777 44 1 14.2798 4.9863 -4.6717 45 1 11.6153 6.6165 -0.5035 46 1 12.8772 5.9079 0.5370 47 1 10.5403 5.3424 1.2930 48 1 11.5148 3.9054 0.8981 49 1 3.3578 1.9709 -1.5640 50 1 3.5850 0.2688 -1.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327287756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:18 Heat of formation + Delta-G solvation = -102.239629 kcal Electronic energy + Delta-G solvation = -29516.963127 eV Core-core repulsion = 25351.452993 eV Total energy + Delta-G solvation = -4165.510134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80138 -39.60874 -38.60815 -37.31955 -36.70211 -34.65941 -33.52818 -32.13404 -30.13867 -29.56953 -29.29426 -28.19376 -26.52274 -25.53617 -24.02471 -22.28656 -21.85596 -21.14151 -20.95115 -20.28761 -19.53410 -18.27674 -17.50688 -16.92233 -16.76577 -16.35423 -15.77241 -15.68598 -15.31578 -15.23695 -14.74708 -14.27869 -14.15983 -14.04655 -13.84411 -13.53524 -13.51202 -13.06417 -13.00293 -12.63998 -12.54695 -12.43913 -12.16000 -11.89569 -11.76898 -11.68184 -11.51725 -11.22703 -11.12401 -11.04961 -10.95680 -10.71949 -10.43434 -10.28535 -10.10605 -10.07412 -9.79212 -9.78231 -9.45999 -9.41686 -8.84828 -8.44565 -6.70738 -5.79512 -3.22050 1.43223 2.32582 3.22811 3.30078 3.38781 3.44902 3.45944 3.62219 4.00118 4.11804 4.48199 4.49267 4.61392 4.73170 4.82064 4.88765 4.91797 4.95526 5.04921 5.12564 5.23835 5.26508 5.37642 5.37913 5.42551 5.49311 5.57098 5.58893 5.72680 5.74539 5.77146 6.02779 6.08300 6.18582 6.23524 6.37257 6.53460 6.62635 6.70531 6.74911 6.75330 6.90405 6.95380 7.33906 7.43403 7.65504 7.74075 7.78887 8.08398 8.43853 9.19863 9.83141 10.39340 11.29146 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.001809 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.571008 B =15475.114901 C =15838.656898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.086 3.914 4 H 0.069 0.931 5 C -0.144 4.144 6 C -0.134 4.134 7 C 0.140 3.860 8 H 0.103 0.897 9 N -0.698 5.698 10 C 0.510 3.490 11 O -0.521 6.521 12 C 0.502 3.498 13 O -0.522 6.522 14 N -0.690 5.690 15 C 0.148 3.852 16 C -0.148 4.148 17 C 0.174 3.826 18 N -0.592 5.592 19 C -0.256 4.256 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.149 3.851 28 C -0.140 4.140 29 C -0.131 4.131 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.407 0.593 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.091 0.909 44 H 0.255 0.745 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.331 -6.670 9.114 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.028 3.972 4 H 0.087 0.913 5 C -0.183 4.183 6 C -0.173 4.173 7 C 0.035 3.965 8 H 0.121 0.879 9 N -0.352 5.352 10 C 0.291 3.709 11 O -0.396 6.396 12 C 0.282 3.718 13 O -0.399 6.399 14 N -0.341 5.341 15 C 0.046 3.954 16 C -0.188 4.188 17 C 0.047 3.953 18 N -0.315 5.315 19 C -0.385 4.385 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.180 4.180 29 C -0.169 4.169 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.243 0.757 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -26.119 -6.824 8.921 28.431 hybrid contribution 0.552 -0.161 -0.171 0.600 sum -25.566 -6.985 8.750 27.910 Atomic orbital electron populations 1.22790 0.81061 1.02836 0.99961 1.87966 1.19670 1.27582 1.94967 1.22739 0.94342 0.84645 0.95485 0.91308 1.22857 0.97537 1.00703 0.97155 1.22870 0.95209 0.99146 1.00054 1.21908 0.87301 0.94041 0.93203 0.87891 1.45837 1.10471 1.48356 1.30511 1.20412 0.83575 0.82280 0.84632 1.90749 1.80504 1.44176 1.24173 1.19994 0.83850 0.82865 0.85115 1.90770 1.80590 1.44489 1.24015 1.46201 1.10169 1.47937 1.29842 1.21242 0.86589 0.93548 0.94069 1.22599 0.99118 0.99896 0.97194 1.20775 0.88891 0.94720 0.90885 1.44101 1.02741 1.62506 1.22131 1.19141 0.82835 1.44734 0.91812 0.91615 1.25048 0.97828 1.00503 0.96190 1.70027 1.37936 1.48653 0.97951 0.86365 0.84302 0.79363 0.76685 1.21040 1.21641 1.20859 1.20842 0.93962 0.92491 0.90537 1.22371 0.97138 1.01410 0.97089 1.22492 0.92753 1.03808 0.97823 0.93993 0.89617 0.94018 0.91052 0.89992 0.90353 0.90638 0.75047 0.75720 0.89576 0.92364 0.92747 0.96022 0.89074 0.93510 0.96092 0.92158 0.92384 0.91549 0.89914 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.38 -3.02 10.26 -35.23 -0.36 -3.38 16 3 C 0.09 0.56 3.38 -25.62 -0.09 0.47 16 4 H 0.07 0.36 7.80 -51.93 -0.41 -0.05 16 5 C -0.14 -0.90 6.56 -25.07 -0.16 -1.07 16 6 C -0.13 -0.99 6.58 -24.73 -0.16 -1.15 16 7 C 0.14 1.19 3.22 -66.27 -0.21 0.97 16 8 H 0.10 1.03 7.55 -51.93 -0.39 0.64 16 9 N -0.70 -6.96 5.15 -52.62 -0.27 -7.23 16 10 C 0.51 6.61 7.89 -11.58 -0.09 6.52 16 11 O -0.52 -7.64 16.13 5.50 0.09 -7.55 16 12 C 0.50 7.47 7.85 -11.58 -0.09 7.38 16 13 O -0.52 -8.91 16.14 5.50 0.09 -8.82 16 14 N -0.69 -10.19 5.07 -54.19 -0.27 -10.46 16 15 C 0.15 2.54 2.42 -67.89 -0.16 2.38 16 16 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 17 C 0.17 4.16 5.31 -3.71 -0.02 4.14 16 18 N -0.59 -14.60 2.99 -172.31 -0.52 -15.11 16 19 C -0.26 -6.93 9.59 -15.06 -0.14 -7.07 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 22 N -0.90 -26.11 11.19 55.49 0.62 -25.48 16 23 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 28 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 29 C -0.13 -0.90 6.34 -25.61 -0.16 -1.06 16 30 H 0.04 0.17 8.10 -51.93 -0.42 -0.25 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.41 3.67 7.84 -40.82 -0.32 3.35 16 38 H 0.41 5.41 8.07 -40.82 -0.33 5.08 16 39 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 50 H 0.09 0.68 7.96 -51.93 -0.41 0.27 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -31.75 400.88 -8.64 -40.39 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.42 Total: 4.82 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.61 Total: 10.23 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.44 Total: -58.29 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.18 Total: -19.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.75 -8.64 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327287756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.848 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds