Wall clock time and date at job start Sat Apr 11 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00107 * 2 1 4 4 H 1.09001 * 110.01367 * 331.39130 * 3 2 1 5 5 C 1.54265 * 110.06947 * 92.80516 * 3 2 1 6 6 C 1.54895 * 104.19348 * 142.92106 * 5 3 2 7 7 C 1.54897 * 102.74665 * 322.05538 * 6 5 3 8 8 H 1.08997 * 110.59864 * 279.21298 * 7 6 5 9 9 N 1.46501 * 110.48569 * 156.62011 * 7 6 5 10 10 C 1.34776 * 119.99833 * 90.22489 * 9 7 6 11 11 O 1.21347 * 120.00016 * 0.02562 * 10 9 7 12 12 C 1.49455 * 119.99667 * 179.72421 * 10 9 7 13 13 O 1.21347 * 120.00259 * 0.27699 * 12 10 9 14 14 N 1.34775 * 119.99578 * 180.27858 * 12 10 9 15 15 C 1.46504 * 119.99744 * 180.02562 * 14 12 10 16 16 C 1.53036 * 109.45737 * 275.02496 * 15 14 12 17 17 C 1.53197 * 109.30980 * 178.59974 * 16 15 14 18 18 N 1.46928 * 108.76339 * 54.65696 * 17 16 15 19 19 C 1.36938 * 120.62961 * 126.40212 * 18 17 16 20 20 H 1.07996 * 119.99962 * 207.66162 * 19 18 17 21 21 C 1.38814 * 119.99767 * 27.66703 * 19 18 17 22 22 N 1.31621 * 120.00183 * 17.36285 * 21 19 18 23 23 Si 1.86797 * 119.99759 * 197.36286 * 21 19 18 24 24 H 1.48506 * 109.47391 * 60.00143 * 23 21 19 25 25 H 1.48506 * 109.47388 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47356 * 299.99920 * 23 21 19 27 27 C 1.46925 * 118.74088 * 306.37962 * 18 17 16 28 28 C 1.53045 * 109.45814 * 154.97094 * 15 14 12 29 29 C 1.53872 * 110.03406 * 209.99903 * 3 2 1 30 30 H 1.09002 * 109.47290 * 60.00180 * 1 2 3 31 31 H 1.09004 * 109.47111 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47353 * 300.00220 * 1 2 3 33 33 H 1.08997 * 110.48896 * 261.59605 * 5 3 2 34 34 H 1.08996 * 110.48985 * 24.11484 * 5 3 2 35 35 H 1.08995 * 110.75834 * 203.74384 * 6 5 3 36 36 H 1.09002 * 110.75849 * 80.37079 * 6 5 3 37 37 H 0.97006 * 120.00027 * 270.22987 * 9 7 6 38 38 H 0.96997 * 120.00462 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.45693 * 34.99865 * 15 14 12 40 40 H 1.08997 * 109.49756 * 298.56688 * 16 15 14 41 41 H 1.09000 * 109.49893 * 58.66603 * 16 15 14 42 42 H 1.09004 * 109.60002 * 294.87038 * 17 16 15 43 43 H 1.09002 * 109.58421 * 174.43618 * 17 16 15 44 44 H 0.97007 * 119.99636 * 179.97438 * 22 21 19 45 45 H 1.08992 * 109.58900 * 293.82874 * 27 18 17 46 46 H 1.08995 * 109.58923 * 173.39403 * 27 18 17 47 47 H 1.09002 * 109.49728 * 301.33601 * 28 15 14 48 48 H 1.08998 * 109.49906 * 61.43535 * 28 15 14 49 49 H 1.09003 * 110.03044 * 121.38103 * 29 3 2 50 50 H 1.08995 * 110.06988 * 359.97260 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0120 -0.4904 5 6 2.2903 1.7602 1.4472 6 6 3.6247 2.5405 1.3486 7 6 4.4265 1.7167 0.3104 8 1 4.8834 0.8465 0.7817 9 7 5.4496 2.5502 -0.3259 10 6 6.6844 2.6269 0.2086 11 8 6.9489 2.0052 1.2166 12 6 7.7299 3.4723 -0.4440 13 8 7.4655 4.0936 -1.4522 14 7 8.9664 3.5446 0.0874 15 6 9.9911 4.3738 -0.5520 16 6 10.6739 3.5735 -1.6634 17 6 11.7204 4.4549 -2.3527 18 7 12.6406 4.9799 -1.3347 19 6 13.9935 4.8130 -1.4646 20 1 14.6199 4.7755 -0.5857 21 6 14.5599 4.6920 -2.7262 22 7 13.8838 5.0705 -3.7902 23 14 16.2815 3.9920 -2.9138 24 1 16.3159 2.6100 -2.3711 25 1 16.6522 3.9679 -4.3517 26 1 17.2451 4.8408 -2.1679 27 6 12.0817 5.6878 -0.1749 28 6 11.0310 4.7927 0.4897 29 6 3.3683 1.2778 -0.7228 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.4927 2.4121 1.8035 34 1 2.3985 0.8972 2.1042 35 1 4.1370 2.5530 2.3106 36 1 3.4534 3.5548 0.9879 37 1 5.2382 3.0469 -1.1318 38 1 9.1776 3.0482 0.8935 39 1 9.5253 5.2624 -0.9780 40 1 11.1611 2.6978 -1.2346 41 1 9.9292 3.2554 -2.3930 42 1 11.2245 5.2832 -2.8590 43 1 12.2775 3.8616 -3.0777 44 1 14.2798 4.9863 -4.6717 45 1 11.6153 6.6165 -0.5035 46 1 12.8772 5.9079 0.5370 47 1 10.5403 5.3424 1.2930 48 1 11.5148 3.9054 0.8981 49 1 3.3578 1.9709 -1.5640 50 1 3.5850 0.2688 -1.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327287756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:16 Heat of formation + Delta-G solvation = -124.869162 kcal Electronic energy + Delta-G solvation = -29517.944418 eV Core-core repulsion = 25351.452993 eV Total energy + Delta-G solvation = -4166.491424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87533 -40.47294 -39.59099 -38.82701 -37.40015 -36.16831 -34.44336 -33.86245 -31.82570 -31.28920 -29.83675 -28.88741 -27.31071 -26.85642 -25.39586 -23.93537 -23.36628 -21.82378 -21.63152 -21.43378 -21.01726 -19.50747 -18.64798 -18.26358 -17.69438 -17.12478 -17.00536 -16.85614 -16.57095 -16.11521 -15.79327 -15.59723 -15.36213 -15.22266 -15.06033 -14.79545 -14.72236 -14.41010 -14.18442 -14.09880 -13.59211 -13.21607 -13.08729 -13.02054 -12.89270 -12.74902 -12.61149 -12.56515 -12.38599 -12.25908 -12.14700 -12.08681 -11.85767 -11.83096 -11.57625 -11.53315 -11.40457 -10.71639 -10.57665 -10.55084 -10.28031 -10.16266 -8.71151 -7.87207 -5.32335 0.31558 1.26844 1.48341 1.51046 1.57405 2.11375 2.52301 2.57449 2.86333 3.28455 3.35144 3.47144 3.56426 3.67278 3.82563 4.02081 4.04949 4.23627 4.28669 4.31635 4.33757 4.42443 4.45643 4.51124 4.60958 4.64988 4.65363 4.73480 4.82034 4.84282 4.90687 4.92436 4.99269 5.02276 5.03707 5.11218 5.13990 5.17107 5.30083 5.32027 5.35978 5.46335 5.64516 5.70228 5.92100 6.31593 6.34959 6.39155 6.72716 6.93453 7.14265 7.85184 8.37025 9.19707 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.001809 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.571008 B =15475.114901 C =15838.656898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.086 3.914 4 H 0.087 0.913 5 C -0.138 4.138 6 C -0.129 4.129 7 C 0.137 3.863 8 H 0.086 0.914 9 N -0.682 5.682 10 C 0.516 3.484 11 O -0.539 6.539 12 C 0.503 3.497 13 O -0.545 6.545 14 N -0.682 5.682 15 C 0.160 3.840 16 C -0.133 4.133 17 C 0.182 3.818 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.072 0.928 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.273 1.273 27 C 0.143 3.857 28 C -0.125 4.125 29 C -0.126 4.126 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.420 0.580 38 H 0.418 0.582 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.052 0.948 42 H -0.004 1.004 43 H 0.057 0.943 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.813 -7.003 10.697 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.028 3.972 4 H 0.105 0.895 5 C -0.176 4.176 6 C -0.168 4.168 7 C 0.033 3.967 8 H 0.104 0.896 9 N -0.335 5.335 10 C 0.296 3.704 11 O -0.417 6.417 12 C 0.284 3.716 13 O -0.423 6.423 14 N -0.334 5.334 15 C 0.056 3.944 16 C -0.173 4.173 17 C 0.055 3.945 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.199 1.199 27 C 0.017 3.983 28 C -0.164 4.164 29 C -0.164 4.164 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.258 0.742 38 H 0.255 0.745 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.014 0.986 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.091 0.909 49 H 0.116 0.884 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.645 -7.164 10.543 30.442 hybrid contribution 0.928 -0.037 -0.657 1.138 sum -26.717 -7.201 9.886 29.383 Atomic orbital electron populations 1.22949 0.79739 1.03620 1.00886 1.87935 1.21249 1.28387 1.95098 1.22798 0.94240 0.84679 0.95525 0.89512 1.22816 0.97295 1.00454 0.97073 1.22822 0.95444 0.99546 0.98996 1.22021 0.87161 0.93474 0.94065 0.89550 1.45840 1.09706 1.47688 1.30297 1.20002 0.83954 0.82020 0.84423 1.90750 1.80858 1.45070 1.24975 1.20339 0.84112 0.82512 0.84669 1.90765 1.81025 1.45439 1.25058 1.45956 1.09728 1.47710 1.30004 1.20901 0.87092 0.92830 0.93612 1.22347 0.97929 0.99213 0.97833 1.20495 0.89249 0.93951 0.90760 1.44344 1.02306 1.63440 1.23209 1.19523 0.84156 1.43649 0.92013 0.91019 1.25815 1.01517 1.01356 0.96019 1.70189 1.39578 1.50348 0.98096 0.85345 0.80217 0.78766 0.76127 1.20497 1.22297 1.19893 1.21032 0.95145 0.92837 0.89314 1.22185 0.95862 1.01255 0.97142 1.22471 0.92537 1.03620 0.97811 0.93006 0.89054 0.93102 0.89383 0.90909 0.91434 0.89737 0.74224 0.74467 0.90860 0.92259 0.92899 0.98559 0.92497 0.94137 0.96426 0.91398 0.88905 0.90903 0.88412 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.85 113.37 1.23 1.43 16 2 O -0.41 -5.81 10.26 -148.98 -1.53 -7.33 16 3 C 0.09 0.93 3.38 31.32 0.11 1.04 16 4 H 0.09 0.65 7.80 -2.39 -0.02 0.63 16 5 C -0.14 -1.46 6.56 31.67 0.21 -1.26 16 6 C -0.13 -1.70 6.58 31.89 0.21 -1.49 16 7 C 0.14 2.15 3.22 46.07 0.15 2.30 16 8 H 0.09 1.69 7.55 -2.39 -0.02 1.67 16 9 N -0.68 -12.65 5.15 -438.76 -2.26 -14.91 16 10 C 0.52 12.70 7.89 87.27 0.69 13.39 16 11 O -0.54 -15.17 16.13 -3.24 -0.05 -15.22 16 12 C 0.50 14.32 7.85 87.27 0.69 15.00 16 13 O -0.55 -18.11 16.14 -3.24 -0.05 -18.16 16 14 N -0.68 -18.96 5.07 -443.73 -2.25 -21.21 16 15 C 0.16 5.27 2.42 45.02 0.11 5.38 16 16 C -0.13 -5.23 5.65 30.67 0.17 -5.05 16 17 C 0.18 8.98 5.31 86.36 0.46 9.43 16 18 N -0.61 -30.24 2.99 -699.08 -2.09 -32.33 16 19 C -0.26 -14.32 9.59 84.03 0.81 -13.51 16 20 H 0.07 3.74 7.89 -2.91 -0.02 3.71 16 21 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 22 N -0.94 -55.87 11.19 21.65 0.24 -55.63 16 23 Si 0.97 44.84 29.59 68.60 2.03 46.87 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 C 0.14 5.62 6.52 86.36 0.56 6.18 16 28 C -0.13 -3.84 5.55 30.68 0.17 -3.66 16 29 C -0.13 -1.53 6.34 31.32 0.20 -1.33 16 30 H 0.05 0.32 8.10 -2.39 -0.02 0.30 16 31 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.42 6.75 7.84 -92.70 -0.73 6.03 16 38 H 0.42 10.14 8.07 -92.71 -0.75 9.39 16 39 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.06 3.18 6.04 -2.39 -0.01 3.17 16 44 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.10 0.89 7.73 -2.39 -0.02 0.87 16 50 H 0.08 1.15 7.96 -2.39 -0.02 1.13 16 Total: -1.00 -69.30 400.88 -0.32 -69.62 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.53 Total: 22.93 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.17 Total: 25.38 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.36 Total: -124.08 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.63 Total: -40.72 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.30 -0.32 -69.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327287756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.248 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds